NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|19114236|ref|NP_593324|]
View 

C-8 sterol isomerase Erg2 [Schizosaccharomyces pombe]

Protein Classification

ERG2 family protein( domain architecture ID 10519191)

ERG2 family protein similar to fungal C-8 sterol isomerase erg2 that catalyzes the reaction which results in unsaturation at C-7 in the B ring of sterols, and vertebrate sigma non-opioid intracellular receptor 1 (SIGMAR1) that functions in lipid transport from the ER

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ERG2_Sigma1R pfam04622
ERG2 and Sigma1 receptor like protein; This family consists of the fungal C-8 sterol isomerase ...
 24-213 5.03e-117

ERG2 and Sigma1 receptor like protein; This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyzes a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum, which interacts with endogenous steroid hormones, such as progesterone and testosterone. It also binds the sigma ligands, which are are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.


:

Pssm-ID: 461372  Cd Length: 192  Bit Score: 331.01  E-value: 5.03e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114236    24 YHLRSFYQFDPAKLQELSKQSIALYANDTKALLYDLSDRLVAEYGDLITPVNQDEWVHNNAGGAMGTMFILHASFSEYLI 103
Cdd:pfam04622   4 QLLPRFYIFDPKELHELAKKAIAKHGNDTTAIFDDIVKELRKEYPDHYNILNEEEWVFNNAGGAMGAMYILHASITEYLI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114236   104 FFGTPIGTEGHSGVHMADDYFTILRGRQLAASANDLEARVYLPGDQHVHPWGHTAQYSMPSGepCFALELAQGWIVSMLP 183
Cdd:pfam04622  84 FFGTAVGTEGHTGRHTADDYFTILTGEQWAYLPGELEPEVYKPGDVHHLPRGEAKQYKMPGG--CFALEYARGWIPSMLP 161

                         170       180       190
                  ....*....|....*....|....*....|
gi 19114236   184 FGFMDGLFSTIDFGTLYKTVYFTAGRMLKS 213
Cdd:pfam04622 162 FGFADTFFSTLDFVTLYRTVYITAREMIKN 191
 
Name Accession Description Interval E-value
ERG2_Sigma1R pfam04622
ERG2 and Sigma1 receptor like protein; This family consists of the fungal C-8 sterol isomerase ...
 24-213 5.03e-117

ERG2 and Sigma1 receptor like protein; This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyzes a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum, which interacts with endogenous steroid hormones, such as progesterone and testosterone. It also binds the sigma ligands, which are are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.


Pssm-ID: 461372  Cd Length: 192  Bit Score: 331.01  E-value: 5.03e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114236    24 YHLRSFYQFDPAKLQELSKQSIALYANDTKALLYDLSDRLVAEYGDLITPVNQDEWVHNNAGGAMGTMFILHASFSEYLI 103
Cdd:pfam04622   4 QLLPRFYIFDPKELHELAKKAIAKHGNDTTAIFDDIVKELRKEYPDHYNILNEEEWVFNNAGGAMGAMYILHASITEYLI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114236   104 FFGTPIGTEGHSGVHMADDYFTILRGRQLAASANDLEARVYLPGDQHVHPWGHTAQYSMPSGepCFALELAQGWIVSMLP 183
Cdd:pfam04622  84 FFGTAVGTEGHTGRHTADDYFTILTGEQWAYLPGELEPEVYKPGDVHHLPRGEAKQYKMPGG--CFALEYARGWIPSMLP 161

                         170       180       190
                  ....*....|....*....|....*....|
gi 19114236   184 FGFMDGLFSTIDFGTLYKTVYFTAGRMLKS 213
Cdd:pfam04622 162 FGFADTFFSTLDFVTLYRTVYITAREMIKN 191
 
Name Accession Description Interval E-value
ERG2_Sigma1R pfam04622
ERG2 and Sigma1 receptor like protein; This family consists of the fungal C-8 sterol isomerase ...
 24-213 5.03e-117

ERG2 and Sigma1 receptor like protein; This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyzes a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum, which interacts with endogenous steroid hormones, such as progesterone and testosterone. It also binds the sigma ligands, which are are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.


Pssm-ID: 461372  Cd Length: 192  Bit Score: 331.01  E-value: 5.03e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114236    24 YHLRSFYQFDPAKLQELSKQSIALYANDTKALLYDLSDRLVAEYGDLITPVNQDEWVHNNAGGAMGTMFILHASFSEYLI 103
Cdd:pfam04622   4 QLLPRFYIFDPKELHELAKKAIAKHGNDTTAIFDDIVKELRKEYPDHYNILNEEEWVFNNAGGAMGAMYILHASITEYLI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114236   104 FFGTPIGTEGHSGVHMADDYFTILRGRQLAASANDLEARVYLPGDQHVHPWGHTAQYSMPSGepCFALELAQGWIVSMLP 183
Cdd:pfam04622  84 FFGTAVGTEGHTGRHTADDYFTILTGEQWAYLPGELEPEVYKPGDVHHLPRGEAKQYKMPGG--CFALEYARGWIPSMLP 161

                         170       180       190
                  ....*....|....*....|....*....|
gi 19114236   184 FGFMDGLFSTIDFGTLYKTVYFTAGRMLKS 213
Cdd:pfam04622 162 FGFADTFFSTLDFVTLYRTVYITAREMIKN 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH