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Conserved domains on  [gi|16128134|ref|NP_414683|]
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putative fimbrial protein YadN [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
9-194 1.48e-29

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15239:

Pssm-ID: 445401  Cd Length: 197  Bit Score: 107.89  E-value: 1.48e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134    9 LSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGG----NKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITV 84
Cdd:PRK15239   6 LATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAvgnsNIDGTVTLKTAHVSDVTAEVQNSTAGVNAEDFSIII 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   85 DCSKAnpNPGSTAKMTFGSVFFGNSKGTLNNDMSIN----NPSDGVNIALHNIDGST-IKQVQINNPGDVYTKALdaTTK 159
Cdd:PRK15239  86 DCSDA--GAGLVKSHLTMSSSFSNTKGTLDNDETLTrsgiEAAKAVDIAVHHVDDANaLSLVKINDPSNTMEESF--TNG 161

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 16128134  160 SAVYDFKASYVR-AVADQTATAGYVKTNTAYTITYQ 194
Cdd:PRK15239 162 IATYNFKASYVKsSDAGASVTTGLVSTNAIYTFTYE 197
 
Name Accession Description Interval E-value
PRK15239 PRK15239
putative fimbrial protein StaA; Provisional
 9-194 1.48e-29

putative fimbrial protein StaA; Provisional


Pssm-ID: 185152  Cd Length: 197  Bit Score: 107.89  E-value: 1.48e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134    9 LSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGG----NKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITV 84
Cdd:PRK15239   6 LATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAvgnsNIDGTVTLKTAHVSDVTAEVQNSTAGVNAEDFSIII 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   85 DCSKAnpNPGSTAKMTFGSVFFGNSKGTLNNDMSIN----NPSDGVNIALHNIDGST-IKQVQINNPGDVYTKALdaTTK 159
Cdd:PRK15239  86 DCSDA--GAGLVKSHLTMSSSFSNTKGTLDNDETLTrsgiEAAKAVDIAVHHVDDANaLSLVKINDPSNTMEESF--TNG 161

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 16128134  160 SAVYDFKASYVR-AVADQTATAGYVKTNTAYTITYQ 194
Cdd:PRK15239 162 IATYNFKASYVKsSDAGASVTTGLVSTNAIYTFTYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
3-194 3.26e-16

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 72.38  E-value: 3.26e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   3 KKLGFALSglmLAMVAGTASADMDGGQLNISGLVVDNTCEtrVDGGNKDGLILLQTATVGEIDAGvlNDTvgAKAKPFSI 82
Cdd:COG3539   2 KKLLLALL---LALALSAAAAAAADGTVNFTGTVVAPTCT--INTGSKDQTVDLGTVSTSDLNGV--GST--SGPKPFSI 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134  83 TV-DCSkanPNPGSTAKMTFGSVFFGNSKGTLNNDMSinNPSDGVNIALHNIDGSTIKqvqINNPGDVYTkaLDATTkSA 161
Cdd:COG3539  73 KLtNCD---AGTSNSVKVTFTGTADSANPGLLANTGS--GGASGVGIQLLDSDGTPIP---LGTPSSAVT--LTSNG-SA 141

                       170       180       190
                ....*....|....*....|....*....|...
gi 16128134 162 VYDFKASYVRavADQTATAGYVKTNTAYTITYQ 194
Cdd:COG3539 142 TLPFYARYVA--TGATVTAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
35-194 4.08e-06

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 44.73  E-value: 4.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134    35 LVVDNTCEtrVDGGNKDgLILLQTATVGEIDAGvlndTVGAKAKPFSITVDCSkaNPNPGSTAKMTFGSVFFGNSKGTLN 114
Cdd:pfam00419   8 TRVPATCK--ITAGTPI-EVDFGQIPVNELNAG----GEGSRQKPFSITLECS--SGSSAVKVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   115 NDMSINNPSdGVNIALHNIDGSTIKqvqINNPGDVYTKALDATTkSAVYDFKASYVRaVADQTATAGYVKTNTAYTITYQ 194
Cdd:pfam00419  79 TGNGAGAAT-GVGIRLYDANGGALP---PNNGTSSIPVSATAAV-ATGITFTASLVA-TTGGTPTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK15239 PRK15239
putative fimbrial protein StaA; Provisional
 9-194 1.48e-29

putative fimbrial protein StaA; Provisional


Pssm-ID: 185152  Cd Length: 197  Bit Score: 107.89  E-value: 1.48e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134    9 LSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGG----NKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITV 84
Cdd:PRK15239   6 LATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAvgnsNIDGTVTLKTAHVSDVTAEVQNSTAGVNAEDFSIII 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   85 DCSKAnpNPGSTAKMTFGSVFFGNSKGTLNNDMSIN----NPSDGVNIALHNIDGST-IKQVQINNPGDVYTKALdaTTK 159
Cdd:PRK15239  86 DCSDA--GAGLVKSHLTMSSSFSNTKGTLDNDETLTrsgiEAAKAVDIAVHHVDDANaLSLVKINDPSNTMEESF--TNG 161

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 16128134  160 SAVYDFKASYVR-AVADQTATAGYVKTNTAYTITYQ 194
Cdd:PRK15239 162 IATYNFKASYVKsSDAGASVTTGLVSTNAIYTFTYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
3-194 3.26e-16

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 72.38  E-value: 3.26e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   3 KKLGFALSglmLAMVAGTASADMDGGQLNISGLVVDNTCEtrVDGGNKDGLILLQTATVGEIDAGvlNDTvgAKAKPFSI 82
Cdd:COG3539   2 KKLLLALL---LALALSAAAAAAADGTVNFTGTVVAPTCT--INTGSKDQTVDLGTVSTSDLNGV--GST--SGPKPFSI 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134  83 TV-DCSkanPNPGSTAKMTFGSVFFGNSKGTLNNDMSinNPSDGVNIALHNIDGSTIKqvqINNPGDVYTkaLDATTkSA 161
Cdd:COG3539  73 KLtNCD---AGTSNSVKVTFTGTADSANPGLLANTGS--GGASGVGIQLLDSDGTPIP---LGTPSSAVT--LTSNG-SA 141

                       170       180       190
                ....*....|....*....|....*....|...
gi 16128134 162 VYDFKASYVRavADQTATAGYVKTNTAYTITYQ 194
Cdd:COG3539 142 TLPFYARYVA--TGATVTAGSFNATATFTIDYQ 172
PRK15307 PRK15307
major fimbrial protein StkA; Provisional
 1-194 6.82e-09

major fimbrial protein StkA; Provisional


Pssm-ID: 185207  Cd Length: 201  Bit Score: 53.12  E-value: 6.82e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134    1 MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRVDGG----NKDGLILLQTATVGEI-DAGVLNDTVGA 75
Cdd:PRK15307   2 FLKKYGLAAAVAMTLSASSAMAADPDTGTITFHGLVTNNTCNISLDNKidqdGNDFDITLPTVFVKDFaTALGVNSTLGE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   76 KAKPFSITvDCSKANPNPGSTAKMTFGSVfFGNSKGTLNNDMSINNPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALD 155
Cdd:PRK15307  82 KQFTLNLS-ECDNATLKDASAQFNSWGGS-SATSGGLLVPPANLQGSATNVNLVLANNGNTATDLIKIDQPNNTQKATIS 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 16128134  156 ATTKSAVYdFKASYVRA---VADQT-ATAGYVKTNTAYTITYQ 194
Cdd:PRK15307 160 TDGTGDLF-YRVAYTQGqkwNADTSpVTSGTVQAQVAFTMIYN 201
Fimbrial pfam00419
Fimbrial protein;
35-194 4.08e-06

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 44.73  E-value: 4.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134    35 LVVDNTCEtrVDGGNKDgLILLQTATVGEIDAGvlndTVGAKAKPFSITVDCSkaNPNPGSTAKMTFGSVFFGNSKGTLN 114
Cdd:pfam00419   8 TRVPATCK--ITAGTPI-EVDFGQIPVNELNAG----GEGSRQKPFSITLECS--SGSSAVKVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   115 NDMSINNPSdGVNIALHNIDGSTIKqvqINNPGDVYTKALDATTkSAVYDFKASYVRaVADQTATAGYVKTNTAYTITYQ 194
Cdd:pfam00419  79 TGNGAGAAT-GVGIRLYDANGGALP---PNNGTSSIPVSATAAV-ATGITFTASLVA-TTGGTPTAGDFNATATIVVDYQ 152
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 9-194 2.35e-03

putative fimbrial protein StaF; Provisional


Pssm-ID: 237933  Cd Length: 197  Bit Score: 37.36  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134    9 LSGLMLAMVAGTASADMDggqLNISGLVVDNTCETRVDGGnkdGLILLQTATVGEIDAGVLNDTVGAKAKPFSITV-DCS 87
Cdd:PRK15262  12 FLGLLFALTSPPAYAGQD---VDLTANIKNSTCQSGISNN---GNVDLGTVGVGYFADNVTAETYYPGGKEFTITVvDCA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   88 KANPNPGSTA-KMTF---GSVFFGNSKGTLNNDMSiNNPSDGVNIALHNIDGSTIKQVQINNPG--DVYTKALDATTKSA 161
Cdd:PRK15262  86 LQGTGSVLNQlHFDFrpqSGVMATGSQQIFANEAV-AGGAKNVGVVIFSIQDPANTFNVLNSDGssRSVYPVMTSALNNS 164

                        170       180       190
                 ....*....|....*....|....*....|...
gi 16128134  162 VYDFKASYVRAVADQTATAGYVKTNTAYTITYQ 194
Cdd:PRK15262 165 SWKFYARMQKIDPALDVTSGQVTSHVLVDVYYE 197
PRK15220 PRK15220
fimbrial protein YehD;
16-191 7.15e-03

fimbrial protein YehD;


Pssm-ID: 237928  Cd Length: 178  Bit Score: 35.94  E-value: 7.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   16 MVAGTASADMDGGQLNISGLVVDNTCETRVDGG-----NKDGLILLQTATVGEIDAGVLNDTVgakakpFSITVDCSKan 90
Cdd:PRK15220  16 MSAGAFAADEDMGELKINGKVVGTTCQFLGTNSatielNQVGVDRLANLNPGQIYTGYTNPTA------MPLKVKCTQ-- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128134   91 pnpGSTAKMTFGSVFFGNskgtlNNDMSINNPSD-GVNIALHnIDGStikQVQINNPGDVYTKALDATTKSAVYDFKASY 169
Cdd:PRK15220  88 ---GAAPRISFSRSQFVD-----NMDITKNNGSAnGAGFAVY-YDGT---DVKPDPETGVTLNPNKFENGVYTLNFSARY 155

                        170       180
                 ....*....|....*....|..
gi 16128134  170 vrAVADQTATAGYVKTNTAYTI 191
Cdd:PRK15220 156 --ARVDNDVTSGDVESTLTLTV 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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