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Conserved domains on  [gi|15235029|ref|NP_192772|]
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light harvesting complex of photosystem II 5 [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 859)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 62-265 2.22e-77

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00025:

Pssm-ID: 470693 [Multi-domain]  Cd Length: 262  Bit Score: 235.80  E-value: 2.22e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   62 WYGPDRRIFLpdGLLDrSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Cdd:PLN00025  46 WYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  142 GpEAVWFKTGALLLDGNTLNYFGKNIPI---NLVLAVVAEVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPE 216
Cdd:PLN00025 123 G-EAVWFKAGAQIFSEGGLDYLGNPSLVhaqSILAIWACQVVLMGAVEGYRVNGGPLGEglDPLYPGGSFDPLGLADDPD 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 15235029  217 QGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
Cdd:PLN00025 202 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 62-265 2.22e-77

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 235.80  E-value: 2.22e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   62 WYGPDRRIFLpdGLLDrSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Cdd:PLN00025  46 WYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  142 GpEAVWFKTGALLLDGNTLNYFGKNIPI---NLVLAVVAEVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPE 216
Cdd:PLN00025 123 G-EAVWFKAGAQIFSEGGLDYLGNPSLVhaqSILAIWACQVVLMGAVEGYRVNGGPLGEglDPLYPGGSFDPLGLADDPD 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 15235029  217 QGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
Cdd:PLN00025 202 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
82-244 3.44e-51

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 165.17  E-value: 3.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029    82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGAncGPEAVWFKTGALLLDGNTLN 161
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGG--GNEPVWFEAGAVALHAQSVP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   162 YFGKNIPInlvlavvaevVLLGGAEYYRI-----TNGLDFEDKLHPGGP-FDPLGLA-KDPEQGALLKVKEIKNGRLAMF 234
Cdd:pfam00504  80 TLLALQIL----------LLMGFLELARWqggkaPGLGGGGDRGYPGGFgFDPLGLAkKDPETLAELKLKELKNGRLAMI 149

                         170
                  ....*....|
gi 15235029   235 AMLGFFIQAY 244
Cdd:pfam00504 150 AFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 62-265 2.22e-77

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 235.80  E-value: 2.22e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   62 WYGPDRRIFLpdGLLDrSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Cdd:PLN00025  46 WYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  142 GpEAVWFKTGALLLDGNTLNYFGKNIPI---NLVLAVVAEVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPE 216
Cdd:PLN00025 123 G-EAVWFKAGAQIFSEGGLDYLGNPSLVhaqSILAIWACQVVLMGAVEGYRVNGGPLGEglDPLYPGGSFDPLGLADDPD 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 15235029  217 QGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
Cdd:PLN00025 202 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 60-270 8.31e-58

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 187.70  E-value: 8.31e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   60 AKWYGPDRRIFLPDGLLDrseIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGA 139
Cdd:PLN00171 101 SFWYGEERPRWLGPIPYD---YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  140 NCGPEAVWFKTGALLLDGNTLNYFGknIP-------INLVLAVVAEVVLLGGAEYYRITNGLDFE--------DKLHPGG 204
Cdd:PLN00171 178 VHFAEPVWWRVGYAKLQGDTLDYLG--IPglhiagsQGVIVIAICQALLMVGPEYARYCGIEALEplgiylpgDINYPGG 255

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15235029  205 P-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
Cdd:PLN00171 256 AlFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
82-244 3.44e-51

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 165.17  E-value: 3.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029    82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGAncGPEAVWFKTGALLLDGNTLN 161
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGG--GNEPVWFEAGAVALHAQSVP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   162 YFGKNIPInlvlavvaevVLLGGAEYYRI-----TNGLDFEDKLHPGGP-FDPLGLA-KDPEQGALLKVKEIKNGRLAMF 234
Cdd:pfam00504  80 TLLALQIL----------LLMGFLELARWqggkaPGLGGGGDRGYPGGFgFDPLGLAkKDPETLAELKLKELKNGRLAMI 149

                         170
                  ....*....|
gi 15235029   235 AMLGFFIQAY 244
Cdd:pfam00504 150 AFLGFFVQEL 159
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 66-273 2.27e-50

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 166.21  E-value: 2.27e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   66 DRRIFLPdGLldrsEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPea 145
Cdd:PLN00147  44 ERPTWLP-GL----DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLP-- 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  146 VWFKTGALLLD-GNTLNYFgknipinlvlavVAEVVLLGGAE---YYRITNG---------LDFEDKL------HPGGP- 205
Cdd:PLN00147 117 VWYEAGAVKFEfASTRTLF------------VVQLLLMGFAEtkrYMDFVSPgsqakegsfFGLEAALeglepgYPGGPl 184

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15235029  206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGT 273
Cdd:PLN00147 185 FNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 82-270 2.44e-47

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 158.27  E-value: 2.44e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNkYGAncgpeavWFKTGA-LLLDGNTL 160
Cdd:PLN00099  54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-LGN-------WVKAQEwAAIPGGQA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  161 NYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGlDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 239
Cdd:PLN00099 126 TYLGNPVPWgTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGF 204

                        170       180       190
                 ....*....|....*....|....*....|...
gi 15235029  240 FIQ--AYvTGEGPVENLAKHLSDPFGNNLLTVI 270
Cdd:PLN00099 205 CVQqsAY-PGTGPLENLATHLADPWHNNIGDII 236
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 84-268 8.46e-44

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 149.62  E-value: 8.46e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   84 YLNGEVAGDYGYDPFGLgKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGANcgPEA---VWFKTGALL 154
Cdd:PLN00048  54 YLDGTLPGDFGFDPLGL-SDPEGAGgfiepQWLAYgEVINGRFAMLGAAGAIAPEILGKAGLI--PQEtalPWFQSGVIP 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  155 LDGnTLNYFGKNIPInlvlaVVAEVVLLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDP 215
Cdd:PLN00048 131 PAG-TYDYWADPYTL-----FVLEMALMGFAEHRRAQDYykpgsmgkqyfLGLEkglggsgNPAYPGGPfFNPLGFGKDE 204

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15235029  216 EQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268
Cdd:PLN00048 205 KSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLT 257
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 64-261 1.24e-41

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 144.55  E-value: 1.24e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   64 GPDRRIFLPDglldrSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK----------------------- 109
Cdd:PLN00187  49 GADRPLWFPG-----AKAPEWLDGSLVGDYGFDPFGLGKPAEylqfdldsldqNLAKnlagdvigtrteaseikstpfqp 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  110 ------YQAF---ELIHARWAMLGAAGFIIPEALNKygancgpeAVWFKTGAL-LLDGNTlnYFGKNIPINLVLAVVAEV 179
Cdd:PLN00187 124 ysevfgLQRFrecELIHGRWAMLATLGALSVEALTG--------VTWQDAGKVeLVDGSS--YLGQPLPFSITTLIWIEV 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  180 VLLGGAEYYRITNgLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 258
Cdd:PLN00187 194 LVIGYIEFQRNAE-LDPEKRLYPGGKfFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 272


                 ...
gi 15235029  259 SDP 261
Cdd:PLN00187 273 SDP 275
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 66-267 3.10e-38

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 134.75  E-value: 3.10e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   66 DRRIFLPDglldrSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEa 145
Cdd:PLN00097  43 DRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPN- 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  146 vWFKTG---ALLLDGNTLnYFGKNIPINLVLAVVAEVVLLGGA----EYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQG 218
Cdd:PLN00097 117 -WIDAAkwdGYWAGAGPL-FFIQMAMFNWAEIRRWQDMKAPGSmnedPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKA 194

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 15235029  219 ALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
Cdd:PLN00097 195 AELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 64-261 9.36e-36

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 128.88  E-value: 9.36e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   64 GPDRRIFLPDglldrSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGancgp 143
Cdd:PLN00098  59 PPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG----- 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  144 eavwFKTGALLLDGNTLNYFGknipiNLVLAVVAEVVLLGGAEYYR----ITNG-LDFEDKL-----------HPGGP-F 206
Cdd:PLN00098 129 ----FIENFSWYDAGAREYFA-----DPTTLFVVQMVLMGWAEGRRwadlIKPGcVDIEPKLpnktnpkpdvgYPGGLwF 199

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15235029  207 DPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDP 261
Cdd:PLN00098 200 DPMMWGRgSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADP 255
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 82-271 2.38e-33

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 121.94  E-value: 2.38e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEavWFktgalllDGNTLN 161
Cdd:PLN00101  63 PGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ--WY-------DAGKAE 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  162 YFGKNIPINLVLAVVAevvllggaEYYRITNGLDF-------EDKL------------HPGGPFDPLGLAKDPEQgallK 222
Cdd:PLN00101 134 YFASSSTLFVIEFILF--------HYVEIRRWQDIknpgsvnQDPIfkqyslppnevgYPGGIFNPLNFAPTEEA----K 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 15235029  223 VKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIA 271
Cdd:PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 79-272 1.34e-30

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 114.59  E-value: 1.34e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   79 SEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKygancgPEavWFKTGA--LLLD 156
Cdd:PLN00100  42 ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL------PK--FWEAGAekYGLD 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  157 GNTLNYFgknipinlvlaVVAEVVLLGGAEY--YRITNgldfEDKLHPGGPFDPLGLaKDPEqgalLKVKEIKNGRLAMF 234
Cdd:PLN00100 114 LQTLVLI-----------QVVVMAVLEAARYrgFMKTG----ESGVLSFFPFDPTGM-DSPE----MKVKEVKNGRLAML 173

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 15235029  235 AMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAG 272
Cdd:PLN00100 174 AFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSSVG 211
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 82-243 2.05e-17

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 79.59  E-value: 2.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNK---YGANCGPEAVW-FKTGALLldG 157
Cdd:PLN00170  67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGipwFEAGADPGAIApFSFGSLL--G 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  158 NTL------------NYFGKNipinlVLAVVAEVVLLGGAEYYRITNGldfeDKLHPGGP-FDPLGLA---------KDP 215
Cdd:PLN00170 145 TQLllmgwveskrwvDFFNPD-----SQSVEWATPWSRTAENFANATG----LQGYPGGKfFDPLGLAgtvkdgvyiPDF 215

                        170       180
                 ....*....|....*....|....*...
gi 15235029  216 EQGALLKVKEIKNGRLAMFAMLGFFIQA 243
Cdd:PLN00170 216 EKLERLKLAEIKHARLAMVAMLIFYFEA 243
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 83-249 7.90e-09

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 54.69  E-value: 7.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029   83 EYLNGEVAGDYGYDPFGLGKKPENFAK-YQAFELIHARWAMLGAAGFIIPEALNKYGancgpEAVWFKT--------GAL 153
Cdd:PLN00089  47 EFMFIGKTGSKKFDPLGLAEKVEEFLPwFRESELKHGRAAMLAVAGFIAPDFVRIPG-----EAYSFAAipktidahDAL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235029  154 LLDGNTLNYFgknIPINLVLAVVAEVVLLGGAEYYRITNglDFEdklhpggpFDPLGLA-KDPEQGALLKVKEIKNGRLA 232
Cdd:PLN00089 122 LKSGAMIQIF---AWIGFVDLAVSAPAAAAAAEFDRTPG--DFG--------FDLLALYpKDAAKMEKKKDKELKNGRLA 188

                        170
                 ....*....|....*..
gi 15235029  233 MFAMLGFFIQAYVTGEG 249
Cdd:PLN00089 189 MVAIGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
206-249 6.06e-07

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 48.07  E-value: 6.06e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15235029   206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEG 249
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 196-243 2.46e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 44.35  E-value: 2.46e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15235029  196 FEDKL---HPGGPFDPLGLAKDPEQGAL--LKVKEIKNGRLAMFAMLGFFIQA 243
Cdd:PLN00120  34 FENELgaqAPLGFFDPLGLVDDGDQEKFdrLRYVEIKHGRISMLAVVGYLVTE 86
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 206-244 7.90e-03

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 37.22  E-value: 7.90e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 15235029  206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAY 244
Cdd:PLN00170  80 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVgQAW 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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