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Conserved domains on  [gi|42565272|ref|NP_189525|]
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mucin-like protein, putative (DUF1216) [Arabidopsis thaliana]

Protein Classification

DUF1216 domain-containing protein( domain architecture ID 10535870)

DUF1216 domain-containing protein similar to Arabidopsis thaliana mediator of RNA polymerase II transcription subunit-like protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1216 pfam06746
Protein of unknown function (DUF1216); This family represents a conserved region, within ...
 400-506 3.75e-29

Protein of unknown function (DUF1216); This family represents a conserved region, within Arabidopsis thaliana proteins, of unknown function. Family members sometimes contain more than one copy.It has been reported that this domain will be found in other Brassicaceae.


:

Pssm-ID: 369060  Cd Length: 132  Bit Score: 111.81  E-value: 3.75e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42565272   400 FFESLKSSMQASASVGSKTAKDYVSASKAATGKLSEAMASVSSKNVKSAKMKSNLDTSKDEMLKCVKQIQDINGKMVSGK 479
Cdd:pfam06746   1 FFEKLKASMKASCPVSSTDEKGYVSDMKSAAGKLSEAMSSVGSKFSKSGEMKKSIQTEQQEVMKTLKELQSVNSKIVSEN 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 42565272   480 --------TVSSTQQSELKQTITKWEKVTTQFVET 506
Cdd:pfam06746  81 kgkkegsmTLTSEQQTEIKQTITKWEQVTTQFVET 115
 
Name Accession Description Interval E-value
DUF1216 pfam06746
Protein of unknown function (DUF1216); This family represents a conserved region, within ...
 400-506 3.75e-29

Protein of unknown function (DUF1216); This family represents a conserved region, within Arabidopsis thaliana proteins, of unknown function. Family members sometimes contain more than one copy.It has been reported that this domain will be found in other Brassicaceae.


Pssm-ID: 369060  Cd Length: 132  Bit Score: 111.81  E-value: 3.75e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42565272   400 FFESLKSSMQASASVGSKTAKDYVSASKAATGKLSEAMASVSSKNVKSAKMKSNLDTSKDEMLKCVKQIQDINGKMVSGK 479
Cdd:pfam06746   1 FFEKLKASMKASCPVSSTDEKGYVSDMKSAAGKLSEAMSSVGSKFSKSGEMKKSIQTEQQEVMKTLKELQSVNSKIVSEN 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 42565272   480 --------TVSSTQQSELKQTITKWEKVTTQFVET 506
Cdd:pfam06746  81 kgkkegsmTLTSEQQTEIKQTITKWEQVTTQFVET 115
 
Name Accession Description Interval E-value
DUF1216 pfam06746
Protein of unknown function (DUF1216); This family represents a conserved region, within ...
 400-506 3.75e-29

Protein of unknown function (DUF1216); This family represents a conserved region, within Arabidopsis thaliana proteins, of unknown function. Family members sometimes contain more than one copy.It has been reported that this domain will be found in other Brassicaceae.


Pssm-ID: 369060  Cd Length: 132  Bit Score: 111.81  E-value: 3.75e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42565272   400 FFESLKSSMQASASVGSKTAKDYVSASKAATGKLSEAMASVSSKNVKSAKMKSNLDTSKDEMLKCVKQIQDINGKMVSGK 479
Cdd:pfam06746   1 FFEKLKASMKASCPVSSTDEKGYVSDMKSAAGKLSEAMSSVGSKFSKSGEMKKSIQTEQQEVMKTLKELQSVNSKIVSEN 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 42565272   480 --------TVSSTQQSELKQTITKWEKVTTQFVET 506
Cdd:pfam06746  81 kgkkegsmTLTSEQQTEIKQTITKWEQVTTQFVET 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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