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Conserved domains on  [gi|15228886|ref|NP_188927|]
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F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

Protein Classification

F-box protein( domain architecture ID 10459143)

F-box protein is the substrate-recognition component of a SCF(Skp1-cullin-F-box) E3 ubiquitin ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 200-364 1.19e-59

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


:

Pssm-ID: 254394  Cd Length: 159  Bit Score: 191.28  E-value: 1.19e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   200 GVSLKGNTYWCAKERKPEWNadpfiivDHIICFDFTSERFGPLVPLPFRAMKESLVTLSCVREEKLAALFCRDVV--VEV 277
Cdd:pfam07734   1 GVSLKGNTYWLAREKETNEE-------DFLLSFDFTTERFGPRLPLPFQSPDLDTVSLSVVREEKLAVLLQEDDTskIEI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   278 WITTTIEFDKVSWSKFLTFGVRDCPMI--YSCTGSFFIDEVNKVAVIFGQPLKR--DKVFIIGEAGQVRDVDlgepaHQD 353
Cdd:pfam07734  74 WVTTKIEPNAVSWSKFLTVDMPPLPGLffHFFAGSFFIDEEKKVAVVCDKDKEKktNTIYIIGEDGYFKEVD-----SSY 148

                         170
                  ....*....|.
gi 15228886   354 SWLYVCPYVPS 364
Cdd:pfam07734 149 CSPLVCSYVPS 159
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 5-47 2.39e-07

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 425796  Cd Length: 43  Bit Score: 46.76  E-value: 2.39e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15228886     5 ISDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRSLKID 47
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKK 43
 
Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 200-364 1.19e-59

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 254394  Cd Length: 159  Bit Score: 191.28  E-value: 1.19e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   200 GVSLKGNTYWCAKERKPEWNadpfiivDHIICFDFTSERFGPLVPLPFRAMKESLVTLSCVREEKLAALFCRDVV--VEV 277
Cdd:pfam07734   1 GVSLKGNTYWLAREKETNEE-------DFLLSFDFTTERFGPRLPLPFQSPDLDTVSLSVVREEKLAVLLQEDDTskIEI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   278 WITTTIEFDKVSWSKFLTFGVRDCPMI--YSCTGSFFIDEVNKVAVIFGQPLKR--DKVFIIGEAGQVRDVDlgepaHQD 353
Cdd:pfam07734  74 WVTTKIEPNAVSWSKFLTVDMPPLPGLffHFFAGSFFIDEEKKVAVVCDKDKEKktNTIYIIGEDGYFKEVD-----SSY 148

                         170
                  ....*....|.
gi 15228886   354 SWLYVCPYVPS 364
Cdd:pfam07734 149 CSPLVCSYVPS 159
F_box_assoc_1 TIGR01640
F-box protein interaction domain; This model describes a large family of plant domains, with ...
 93-323 2.03e-34

F-box protein interaction domain; This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.


Pssm-ID: 273726 [Multi-domain]  Cd Length: 230  Bit Score: 127.48  E-value: 2.03e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886    93 LFHCEGLLlCILKDDntKVVVWNPYLGQRRFIQVR-FSHIPGGWDqfSYALGYyknNNMMKSFKLLRFFDYFYTSNDFVF 171
Cdd:TIGR01640   1 VVPCDGLI-CFSYGK--RLVVWNPSTGQSRWLPTPkSRRSNKESD--TYFLGY---DPIEKQYKVLCFSDRSGNRNQSEH 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   172 YeIYDFDSGLWKTLDVTPYWRIRffDDIGVSLKGNTYWCAKERKPEwnadpfiIVDHIICFDFTSERFGPLVPLPFRA-M 250
Cdd:TIGR01640  73 Q-VYTLGSNSWRTIECSPPHHPL--KSRGVCINGVLYYLAYTLKTN-------PDYFIVSFDVSSERFKEFIPLPCGNsD 142

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15228886   251 KESLVTLScVREEKLAAL---FCRDvVVEVWITTtiEFDKVSWSKFLTFGVRDCP-MIYSCTGSFFIDEvNKVAVIF 323
Cdd:TIGR01640 143 SVDYLSLI-NYKGKLAVLkqkKDTN-NFDLWVLN--DAGKQEWSKLFTVPIPPLPdLVDDNFLSGFTDK-GEIVLCC 214
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 5-47 2.39e-07

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 46.76  E-value: 2.39e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15228886     5 ISDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRSLKID 47
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKK 43
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 6-43 7.10e-07

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438928  Cd Length: 39  Bit Score: 45.53  E-value: 7.10e-07
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 15228886   6 SDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRS 43
Cdd:cd22157   1 SSLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPS 38
FBOX smart00256
A Receptor for Ubiquitination Targets;
8-47 1.54e-04

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 38.96  E-value: 1.54e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 15228886      8 LPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRSLKID 47
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFK 40
 
Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 200-364 1.19e-59

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 254394  Cd Length: 159  Bit Score: 191.28  E-value: 1.19e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   200 GVSLKGNTYWCAKERKPEWNadpfiivDHIICFDFTSERFGPLVPLPFRAMKESLVTLSCVREEKLAALFCRDVV--VEV 277
Cdd:pfam07734   1 GVSLKGNTYWLAREKETNEE-------DFLLSFDFTTERFGPRLPLPFQSPDLDTVSLSVVREEKLAVLLQEDDTskIEI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   278 WITTTIEFDKVSWSKFLTFGVRDCPMI--YSCTGSFFIDEVNKVAVIFGQPLKR--DKVFIIGEAGQVRDVDlgepaHQD 353
Cdd:pfam07734  74 WVTTKIEPNAVSWSKFLTVDMPPLPGLffHFFAGSFFIDEEKKVAVVCDKDKEKktNTIYIIGEDGYFKEVD-----SSY 148

                         170
                  ....*....|.
gi 15228886   354 SWLYVCPYVPS 364
Cdd:pfam07734 149 CSPLVCSYVPS 159
F_box_assoc_1 TIGR01640
F-box protein interaction domain; This model describes a large family of plant domains, with ...
 93-323 2.03e-34

F-box protein interaction domain; This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.


Pssm-ID: 273726 [Multi-domain]  Cd Length: 230  Bit Score: 127.48  E-value: 2.03e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886    93 LFHCEGLLlCILKDDntKVVVWNPYLGQRRFIQVR-FSHIPGGWDqfSYALGYyknNNMMKSFKLLRFFDYFYTSNDFVF 171
Cdd:TIGR01640   1 VVPCDGLI-CFSYGK--RLVVWNPSTGQSRWLPTPkSRRSNKESD--TYFLGY---DPIEKQYKVLCFSDRSGNRNQSEH 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228886   172 YeIYDFDSGLWKTLDVTPYWRIRffDDIGVSLKGNTYWCAKERKPEwnadpfiIVDHIICFDFTSERFGPLVPLPFRA-M 250
Cdd:TIGR01640  73 Q-VYTLGSNSWRTIECSPPHHPL--KSRGVCINGVLYYLAYTLKTN-------PDYFIVSFDVSSERFKEFIPLPCGNsD 142

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15228886   251 KESLVTLScVREEKLAAL---FCRDvVVEVWITTtiEFDKVSWSKFLTFGVRDCP-MIYSCTGSFFIDEvNKVAVIF 323
Cdd:TIGR01640 143 SVDYLSLI-NYKGKLAVLkqkKDTN-NFDLWVLN--DAGKQEWSKLFTVPIPPLPdLVDDNFLSGFTDK-GEIVLCC 214
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 5-47 2.39e-07

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 46.76  E-value: 2.39e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15228886     5 ISDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRSLKID 47
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKK 43
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 6-43 7.10e-07

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438928  Cd Length: 39  Bit Score: 45.53  E-value: 7.10e-07
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 15228886   6 SDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRS 43
Cdd:cd22157   1 SSLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPS 38
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 5-44 2.03e-05

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438923  Cd Length: 45  Bit Score: 41.40  E-value: 2.03e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 15228886   5 ISDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRSL 44
Cdd:cd22152   2 IPGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPEL 41
FBOX smart00256
A Receptor for Ubiquitination Targets;
8-47 1.54e-04

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 38.96  E-value: 1.54e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 15228886      8 LPRDLKKKIFSRIPLRYVRALRLTCKEWETLIKSRSLKID 47
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFK 40
F-box_FBXO6-like cd22168
F-box domain found in F-box only proteins FBXO6, FBXO44 and similar proteins; This subfamily ...
 3-39 2.77e-03

F-box domain found in F-box only proteins FBXO6, FBXO44 and similar proteins; This subfamily includes FBXO6 and FBXO44. FBXO6, also called FBX6, F-box protein that recognizes sugar chains 2 (FBS2), or F-box/G-domain protein 2 (FBG2), is a substrate-recognition component of SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes. It is involved in the endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins, by recognizing and binding sugar chains on unfolded glycoproteins that are retro-translocated into the cytosol and promoting their ubiquitination and subsequent degradation. FBXO6 can recognize and bind denatured glycoproteins, which are modified with not only high-mannose but also complex-type oligosaccharides. It also recognizes sulfated glycans. FBXO6 is involved in DNA damage response by specifically recognizing activated CHEK1 (phosphorylated on 'Ser-345'), promoting its ubiquitination and degradation. FBXO44, also called FBXO6A, FBX44, or F-box/G-domain protein 3 (FBG3), is a substrate-recognition component of an SCF-type E3 ubiquitin ligase complex. It interacts with SKP1 and CUL1. FBXO44 mediates BRCA1 ubiquitination and degradation. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438939 [Multi-domain]  Cd Length: 82  Bit Score: 36.49  E-value: 2.77e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 15228886   3 LTISDLPRDLKKKIFSRIPLRY-VRALRLTCKEWETLI 39
Cdd:cd22168   2 LTISDLPEDVLLEILSLVPARDlILSCRLVCSRWRDLV 39
F-box_SF cd09917
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ...
 6-40 8.04e-03

F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.


Pssm-ID: 438852  Cd Length: 35  Bit Score: 33.96  E-value: 8.04e-03
                        10        20        30
                ....*....|....*....|....*....|....*
gi 15228886   6 SDLPRDLKKKIFSRIPLRYVRALRLTCKEWETLIK 40
Cdd:cd09917   1 SDLPDEILLKILSYLDPRDLLRLSLVCKRWRELAS 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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