NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|209977046|ref|NP_115511|]
View 

fibrous sheath CABYR-binding protein [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rne super family cl35953
ribonuclease E; Reviewed
 231-379 7.99e-08

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.20  E-value: 7.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  231 EDELREEVTVPVVQEGSAVKkVASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETH--VQVQPSTEETPDAEAATA 308
Cdd:PRK10811  858 QREAEEVQVQPVVAEVPVAA-AVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHpeVIAAPVTEQPQVITESDV 936

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 209977046  309 VAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPsVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVE 379
Cdd:PRK10811  937 AVAQEVAEHAEPVVEPQDETADIEEAAETAEVVV-AEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
277-484 1.70e-06

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 51.80  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 277 ATAKAEPRPAEETHVQVQPSTEETPDAEAATAVAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAe 356
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA- 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 357 esPSEEPPAEILPPPAekspsvellgeirSPSAQKAPIEVQPLPAEGALEEAPAKVEPPTVEETLADV-QPLLPEEAPRE 435
Cdd:PRK12323 454 --PAAAPAAAARPAAA-------------GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFaSPAPAQPDAAP 518

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 209977046 436 EARELQLSTAMETPAEEAPTEFQSPLPKETTAEEASAEIQLLAATEPPA 484
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
2A1904 super family cl36772
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 443-588 5.20e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


The actual alignment was detected with superfamily member TIGR00927:

Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 40.36  E-value: 5.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046   443 STAMETPAE-EAPTEFQSPLPKETTAEEASAEIQLLAATEPPADETPAEARSPLSEETSAEEAHA---------EVQSPL 512
Cdd:TIGR00927  640 HTGERTGEEgERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAdhkgeteaeEVEHEG 719

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 209977046   513 AEETTAEEASAEIQLLAAIEAPADETPAEAQSPLSEETSAEEAPAEVQSPSAKGVSIEEAPLELQPPSGEETTAEE 588
Cdd:TIGR00927  720 ETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 231-379 7.99e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.20  E-value: 7.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  231 EDELREEVTVPVVQEGSAVKkVASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETH--VQVQPSTEETPDAEAATA 308
Cdd:PRK10811  858 QREAEEVQVQPVVAEVPVAA-AVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHpeVIAAPVTEQPQVITESDV 936

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 209977046  309 VAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPsVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVE 379
Cdd:PRK10811  937 AVAQEVAEHAEPVVEPQDETADIEEAAETAEVVV-AEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
277-484 1.70e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.80  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 277 ATAKAEPRPAEETHVQVQPSTEETPDAEAATAVAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAe 356
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA- 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 357 esPSEEPPAEILPPPAekspsvellgeirSPSAQKAPIEVQPLPAEGALEEAPAKVEPPTVEETLADV-QPLLPEEAPRE 435
Cdd:PRK12323 454 --PAAAPAAAARPAAA-------------GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFaSPAPAQPDAAP 518

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 209977046 436 EARELQLSTAMETPAEEAPTEFQSPLPKETTAEEASAEIQLLAATEPPA 484
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 443-588 5.20e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 40.36  E-value: 5.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046   443 STAMETPAE-EAPTEFQSPLPKETTAEEASAEIQLLAATEPPADETPAEARSPLSEETSAEEAHA---------EVQSPL 512
Cdd:TIGR00927  640 HTGERTGEEgERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAdhkgeteaeEVEHEG 719

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 209977046   513 AEETTAEEASAEIQLLAAIEAPADETPAEAQSPLSEETSAEEAPAEVQSPSAKGVSIEEAPLELQPPSGEETTAEE 588
Cdd:TIGR00927  720 ETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 445-593 5.34e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.96  E-value: 5.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 445 AMETPAEEAPTEFqsplpkeTTAEEASAeiqllAATEPPADetPAEARSPlseETSAEEAHAEVQSPLAEETTAEEASAE 524
Cdd:PRK13108 291 VVDEALEREPAEL-------AAAAVASA-----ASAVGPVG--PGEPNQP---DDVAEAVKAEVAEVTDEVAAESVVQVA 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 209977046 525 IQLLAAIEAPADETPAEAQSPLSEETSAEeAPAEVQSPSAKGVSIEEAPLELQP--PSGEETTAEEASAAI 593
Cdd:PRK13108 354 DRDGESTPAVEETSEADIEREQPGDLAGQ-APAAHQVDAEAASAAPEEPAALASeaHDETEPEVPEKAAPI 423
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 231-379 7.99e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.20  E-value: 7.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  231 EDELREEVTVPVVQEGSAVKkVASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETH--VQVQPSTEETPDAEAATA 308
Cdd:PRK10811  858 QREAEEVQVQPVVAEVPVAA-AVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHpeVIAAPVTEQPQVITESDV 936

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 209977046  309 VAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPsVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVE 379
Cdd:PRK10811  937 AVAQEVAEHAEPVVEPQDETADIEEAAETAEVVV-AEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
277-484 1.70e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.80  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 277 ATAKAEPRPAEETHVQVQPSTEETPDAEAATAVAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAe 356
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA- 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 357 esPSEEPPAEILPPPAekspsvellgeirSPSAQKAPIEVQPLPAEGALEEAPAKVEPPTVEETLADV-QPLLPEEAPRE 435
Cdd:PRK12323 454 --PAAAPAAAARPAAA-------------GPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFaSPAPAQPDAAP 518

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 209977046 436 EARELQLSTAMETPAEEAPTEFQSPLPKETTAEEASAEIQLLAATEPPA 484
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
304-504 2.20e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.42  E-value: 2.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 304 EAATAVAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVEllAEILPPSAEESPSEEPPAEILPPPAEKSPSVELLGE 383
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAA--AAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 384 IRSPSAQKAPIEVQPLPAEGALEEAPAKVEPPTVEETLADVQPLLPEEApreearelqlstametPAEEAPTEFQSPLPK 463
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP----------------PWEELPPEFASPAPA 512

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 209977046 464 ETTAEEASAEiqlLAATEPPADETPAEARSPLSEETSAEEA 504
Cdd:PRK12323 513 QPDAAPAGWV---AESIPDPATADPDDAFETLAPAPAAAPA 550
PHA03247 PHA03247
large tegument protein UL36; Provisional
 241-557 4.04e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 4.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  241 PVVQEGSAVKKVASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETHVQVQPSTEETPDAEAATAVAENSVKVQPPP 320
Cdd:PHA03247 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  321 AEEAPLVEFPAEIQP-----PSAEESPSVELLAEILP--PSAEESPSEEPPAEilpPPAEKSPSVELLGEirsPSAQKAP 393
Cdd:PHA03247 2822 ASPAGPLPPPTSAQPtapppPPGPPPPSLPLGGSVAPggDVRRRPPSRSPAAK---PAAPARPPVRRLAR---PAVSRST 2895

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  394 iEVQPLPAEGALEEAPAKVEPPTVEETLADVQPLLPEEAPREEARELQLSTAMETPAEEAPTEFQSPLPKETTAEEASAE 473
Cdd:PHA03247 2896 -ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  474 IQLLAATEPPADETPAEARSPLSEETSAEEAHAEVQSPLAEETTAEEASaeiqLLAAIEAPADETPAEAQSPLSEETSAE 553
Cdd:PHA03247 2975 PRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS----LKQTLWPPDDTEDSDADSLFDSDSERS 3050


                  ....
gi 209977046  554 EAPA 557
Cdd:PHA03247 3051 DLEA 3054
rne PRK10811
ribonuclease E; Reviewed
 238-409 1.33e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 48.88  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  238 VTVPVVQEGSAVKKVASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETHVQVQP-STEETPDAEAATAVAENSVKV 316
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPqPEEVVVVETTHPEVIAAPVTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  317 QPPP--AEEAPLVEFPAEIQPPSAEESPSVELLAEILPpsAEESPSEEPPAEILPPPAEKSPSVELLGEIRSPSAQKAPI 394
Cdd:PRK10811  927 QPQVitESDVAVAQEVAEHAEPVVEPQDETADIEEAAE--TAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                         170
                  ....*....|....*
gi 209977046  395 EVQPLPAEGALEEAP 409
Cdd:PRK10811 1005 QVPEATVEHNHATAP 1019
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
246-462 3.79e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.18  E-value: 3.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 246 GSAVKKVASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETHVQVQPSTEETPdAEAATAVAENSVKVQPPPAEEAP 325
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP-APEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 326 lvefPAEIQPPSAEESPSVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVELLGEIRSPSAqkAPIEVQPLPAEGAL 405
Cdd:PRK12323 452 ----PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP--AQPDAAPAGWVAES 525

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 209977046 406 EEAPAKVEPPTVEETLADVQPLLPEEAPREEARELQLSTAMETPAEEAPTEFQSPLP 462
Cdd:PRK12323 526 IPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
317-541 8.62e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.02  E-value: 8.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 317 QPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEIlPPSAEESPSEEPPAEilpPPAEKSPSVELLGEIRSPSAQKAPIEV 396
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP-AAAPAAAAAARAVAA---APARRSPAPEALAAARQASARGPGGAP 448

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 397 QPLPAEGAleeAPAKVEPPtveetladvqpllpeeapreearelqlstAMETPAEEAPTEFQSPLPKETTAEEASAeiql 476
Cdd:PRK12323 449 APAPAPAA---APAAAARP-----------------------------AAAGPRPVAAAAAAAPARAAPAAAPAPA---- 492

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 209977046 477 lAATEPPADETPAEARSPLSEETSAEEAHAEVQSPLAEETTAEEASAEIQLLAAIEAPADETPAE 541
Cdd:PRK12323 493 -DDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 248-400 9.78e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.86  E-value: 9.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 248 AVKKVASAEIEPPSTEKFPAkiqPPLVEEATAKAEPRPAeethvqvqpsteeTPDAEAATAVAENSVKVQPPPAEEAPLV 327
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPA---RPEAAAPAAAPVAQAA-------------AAPAPAAAPAAAASAPAAPPAAAPPAPV 426

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 209977046 328 EFPAEIQPPSAEESPSVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSvellgeiRSPSAQKAPIEVQPLP 400
Cdd:PRK14951 427 AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA-------PAPAAAPAAARLTPTE 492
rne PRK10811
ribonuclease E; Reviewed
 236-375 1.42e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 45.80  E-value: 1.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  236 EEVTVPVVQEGSAVKKVASAEIEPPSTEKFPAKIQPPLVEEATA------KAEPRPAEETHVQVQPSTEETPDAEAATAV 309
Cdd:PRK10811  893 EVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVavaqevAEHAEPVVEPQDETADIEEAAETAEVVVAE 972

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 209977046  310 AENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAeesPSEEPPA-EILPPPAEKS 375
Cdd:PRK10811  973 PEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATA---PMTRAPApEYVPEAPRHS 1036
rne PRK10811
ribonuclease E; Reviewed
 257-415 2.80e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 44.65  E-value: 2.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  257 IEPPSTEKFPAKIQPPLVEEATAKAE-PRPAEETHVQVQPSTEETPDAEAATAVAENSVKVQPPPAE-EAP-LVEFPAEI 333
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEvPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtTHPeVIAAPVTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  334 QPP--SAEESPSVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVELLGEIRSPSAQKAPIEVQPLPAEGALEEAPAK 411
Cdd:PRK10811  927 QPQviTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006


                  ....
gi 209977046  412 VEPP 415
Cdd:PRK10811 1007 PEAT 1010
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 353-525 3.29e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.09  E-value: 3.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 353 PSAEESPSEEPPAEILPPPAEKSPSVellgeiRSPSAQKAPIEVQPLPAEGALEEAPAKVEPPTVEETLADVQPLLPEEA 432
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAA------PTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQG 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 433 PREEARELQLSTAMETPAEEAPTEF--QSPLPKETTAEEASAEIQLLAATEPPADETPAEARSPLSEETSAEEAHAEVQS 510
Cdd:PRK07994 435 ATKAKKSEPAAASRARPVNSALERLasVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514

                        170
                 ....*....|....*
gi 209977046 511 PLAEETTAEEASAEI 525
Cdd:PRK07994 515 KLAAEAIERDPWAAL 529
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 284-420 3.35e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.09  E-value: 3.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 284 RPAEEThVQVQPSTEETPDAEAATAVAENSVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEiLPPSAEESPSEEP 363
Cdd:PRK07994 360 HPAAPL-PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLA-ARQQLQRAQGATK 437

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 209977046 364 PAEILPPPAEKSPSVE-LLGEIRSPSAQKAPIEVQPLPAEGALEEAPAKVEPPTVEET 420
Cdd:PRK07994 438 AKKSEPAAASRARPVNsALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVA 495
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
238-450 5.05e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 5.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 238 VTVPVVQEGSAVKK---VASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETHVQVQPSTEETPDAEAATAVAENSV 314
Cdd:PRK12323 378 AAAPVAQPAPAAAApaaAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAA 457

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 315 KV-QPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAEESPSEepPAEILPPPAEKSPSVELLGEIRSPSAQkap 393
Cdd:PRK12323 458 PAaAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPE--FASPAPAQPDAAPAGWVAESIPDPATA--- 532

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 209977046 394 ievQPLPAEGALEEAPAKVEPPTVEetlADVQPLLPEEAPREEARELQLSTAMETPA 450
Cdd:PRK12323 533 ---DPDDAFETLAPAPAAAPAPRAA---AATEPVVAPRPPRASASGLPDMFDGDWPA 583
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 241-511 8.70e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.15  E-value: 8.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  241 PVVQEGSAVKKVASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEEThVQVQPS----TEETPDAEAATAVAENSVKV 316
Cdd:PRK10263  309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPT-VAWQPVpgpqTGEPVIAPAPEGYPQQSQYA 387

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  317 QPPPAEEAPLVEfPAEIQPPSAEESPSVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVELLGEI---RSPSAQKAP 393
Cdd:PRK10263  388 QPAVQYNEPLQQ-PVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQStfaPQSTYQTEQ 466

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  394 IEVQPLPAEgALEEAPAKVEPPTVEETLADVQPLLPEEAPREEARELQLSTAMETPAEEA-----PTEFQSPLPKETTAE 468
Cdd:PRK10263  467 TYQQPAAQE-PLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAwyqpiPEPVKEPEPIKSSLK 545

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 209977046  469 EASaeiqllAATEPPADETPAEA--RSPLSEETSAEEAHAEVQSP 511
Cdd:PRK10263  546 APS------VAAVPPVEAAAAVSplASGVKKATLATGAAATVAAP 584
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 318-416 8.98e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 8.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 318 PPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAEESPSEePPAEILPPPAEKSPSVELLGEIRSPSAQKAPIEVQ 397
Cdd:PRK14951 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA-PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451

                         90
                 ....*....|....*....
gi 209977046 398 PLPAEGALEEAPAKVEPPT 416
Cdd:PRK14951 452 PAQAAPETVAIPVRVAPEP 470
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 213-511 1.20e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.75  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 213 ISRTSFTQE--------TKKGPPVLLEDELREEvTVPVVQEGSAVKKVASAEIEPPSTEKFPAK--------IQPPLVEE 276
Cdd:PTZ00449 476 ISKIQFTQEikklikksKKKLAPIEEEDSDKHD-EPPEGPEASGLPPKAPGDKEGEEGEHEDSKesdepkegGKPGETKE 554

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 277 ATAKAEPRPAEETHVQVQPSTEETPDAEAATAvaensvkvQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEIlPPSAE 356
Cdd:PTZ00449 555 GEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPK--------HPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDI-PKSPK 625

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 357 ESPSEEPPAEilPPPAEKSPSVELLGEIRSPSAQKAPIEVQPlPAEGALEEA-------PAKVEPPTVEETLADVQPLLP 429
Cdd:PTZ00449 626 RPESPKSPKR--PPPPQRPSSPERPEGPKIIKSPKPPKSPKP-PFDPKFKEKfyddyldAAAKSKETKTTVVLDESFESI 702

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 430 EEAPREEARELQLSTAMETPAEEaPTEFQSPL--PKETTAEEASaEIQLLAATEPPA---DETPAEARSP--LSEETSAE 502
Cdd:PTZ00449 703 LKETLPETPGTPFTTPRPLPPKL-PRDEEFPFepIGDPDAEQPD-DIEFFTPPEEERtffHETPADTPLPdiLAEEFKEE 780


                 ....*....
gi 209977046 503 EAHAEVQSP 511
Cdd:PTZ00449 781 DIHAETGEP 789
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
334-568 1.74e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.79  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 334 QPPSAEESPSVELLAEILPPSAEESPSEEPPAEILPPP--AEKSPSVELLGEIRSPSAQKAPIEVQPLPAEGALEEAPAk 411
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPaaAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA- 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 412 vepptveetladvqpllpeeapreearelqlSTAMETPAEEAPTEFQSPLPKETTAEEASAeiqllaATEPPADETPAEA 491
Cdd:PRK12323 452 -------------------------------PAPAAAPAAAARPAAAGPRPVAAAAAAAPA------RAAPAAAPAPADD 494

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 209977046 492 RSPLSEETSAEEAHAEVQSPLAEETTAEEASAEIQLLAAIEAPADETPAEAQSPLSEETSAEEAPAEVQSPSAKGVS 568
Cdd:PRK12323 495 DPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 225-563 1.87e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  225 GPPVLLEDELREEVTVPVVQEGSAVKKVASAEIEPPS---TEKFPAKIQPPLVEEATAKAEPRPAEETHVQVQPSTEETP 301
Cdd:PHA03307   38 GSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGpgtEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  302 DAEA---------ATAVAEN---SVKVQPPPAEEAPLVEFPAEIQPPSAEESPSVELLAEILPPSAEESPSEEPPAEILP 369
Cdd:PHA03307  118 PPTPppaspppspAPDLSEMlrpVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  370 PPAEKSPSVELLGEIRSPSAQKApievQPLPAEGALEEAPAKVEPPTVEEtLADVQPLLPEEAPREEARELQLSTAMETP 449
Cdd:PHA03307  198 PPAAASPRPPRRSSPISASASSP----APAPGRSAADDAGASSSDSSSSE-SSGCGWGPENECPLPRPAPITLPTRIWEA 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046  450 AEEAPTEFQSPLPKETTAEEASAeiqllAATEPPADETPAEARSPLSEETSAEEAHAEVQSPLAEETTAEEASAEI-QLL 528
Cdd:PHA03307  273 SGWNGPSSRPGPASSSSSPRERS-----PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPgPSP 347

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 209977046  529 AAIEAPADETPAEAQSPLSE-ETSAEEAPAEVQSPS 563
Cdd:PHA03307  348 SRSPSPSRPPPPADPSSPRKrPRPSRAPSSPAASAG 383
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 384-556 1.95e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 41.50  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 384 IRSPSAQKAPievQPLPAEGALEEAPAKVEPPTVEETLADvqpllpeeapreearelqlSTAMETPaeeaPTEFQSPLPK 463
Cdd:PRK13108 273 ILAPKGREAP---GALRGSEYVVDEALEREPAELAAAAVA-------------------SAASAVG----PVGPGEPNQP 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 464 ETTAEEASAEIQLLAATEPPADETPAEARSPLSEETSAEEAHAEVQSPLAEETTAeEASAEIQLLAAIEAPADETPAeAQ 543
Cdd:PRK13108 327 DDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAG-QAPAAHQVDAEAASAAPEEPA-AL 404

                        170
                 ....*....|...
gi 209977046 544 SPLSEETSAEEAP 556
Cdd:PRK13108 405 ASEAHDETEPEVP 417
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 401-565 2.73e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 41.12  E-value: 2.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 401 AEGALEEAPAKVEPPTVEETLADVQPL----LPEEAPREEARELQLSTAMETPAEEAPTEFQSPLPKETTAEEASAEIql 476
Cdd:PRK13108 292 VDEALEREPAELAAAAVASAASAVGPVgpgePNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEA-- 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 477 lAATEPPADETPAEArsPLSEETSAEEAHAEVQSPLAEETTAEEASAEiqllaaiEAPADETPAEAQSPLSEETSAEEAP 556
Cdd:PRK13108 370 -DIEREQPGDLAGQA--PAAHQVDAEAASAAPEEPAALASEAHDETEP-------EVPEKAAPIPDPAKPDELAVAGPGD 439


                 ....*....
gi 209977046 557 AEVQSPSAK 565
Cdd:PRK13108 440 DPAEPDGIR 448
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 252-410 3.64e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.00  E-value: 3.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 252 VASAEIEPPSTEKFPAKIQPPLVEEATAKAEPRPAEETHVQVQPSTEETPDAEAATAVAENSVKVQPPPAEEAPlvEFPA 331
Cdd:PRK07994 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKA--KKSE 442

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 209977046 332 EIQPPSAEESPSVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVELLGEIRsPSAQKAPIEVQPLPAEGALEEAPA 410
Cdd:PRK07994 443 PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAEA 520
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 443-588 5.20e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 40.36  E-value: 5.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046   443 STAMETPAE-EAPTEFQSPLPKETTAEEASAEIQLLAATEPPADETPAEARSPLSEETSAEEAHA---------EVQSPL 512
Cdd:TIGR00927  640 HTGERTGEEgERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAdhkgeteaeEVEHEG 719

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 209977046   513 AEETTAEEASAEIQLLAAIEAPADETPAEAQSPLSEETSAEEAPAEVQSPSAKGVSIEEAPLELQPPSGEETTAEE 588
Cdd:TIGR00927  720 ETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 445-593 5.34e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.96  E-value: 5.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 445 AMETPAEEAPTEFqsplpkeTTAEEASAeiqllAATEPPADetPAEARSPlseETSAEEAHAEVQSPLAEETTAEEASAE 524
Cdd:PRK13108 291 VVDEALEREPAEL-------AAAAVASA-----ASAVGPVG--PGEPNQP---DDVAEAVKAEVAEVTDEVAAESVVQVA 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 209977046 525 IQLLAAIEAPADETPAEAQSPLSEETSAEeAPAEVQSPSAKGVSIEEAPLELQP--PSGEETTAEEASAAI 593
Cdd:PRK13108 354 DRDGESTPAVEETSEADIEREQPGDLAGQ-APAAHQVDAEAASAAPEEPAALASeaHDETEPEVPEKAAPI 423
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
386-592 9.36e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.47  E-value: 9.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 386 SPSAQKAPIEVQPLPAEGAleeAPAKVEPPTVEETLADVQPLLPEEAPREEARELQLSTAmetPAEEAPTEFQSPLPKET 465
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAA---PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA---PEALAAARQASARGPGG 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209977046 466 TAEEASAEIQLLAATEPPADETP-----AEARSPLSEETSAEEAHAEVQSPLAEETTAEEASAEIQLLAAIEAPADET-- 538
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPrpvaaAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAEsi 526

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 209977046 539 --PAEAQSPLSEETSAEEAPAEVQSPSAKGVSIEEAPlelQPPSGEETTAEEASAA 592
Cdd:PRK12323 527 pdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP---RPPRASASGLPDMFDG 579
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH