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Conserved domains on  [gi|13786616|ref|NP_112529|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Caiman crocodilus]

Protein Classification

ND4L family protein( domain architecture ID 10009575)

ND4L family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-97 4.35e-26

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177184  Cd Length: 98  Bit Score: 92.22  E-value: 4.35e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSH-PSLFILPLTVLTISAREAGVGLALLIA 79
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQtPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 13786616  80 STRTHNTTNLKNLNLLQC 97
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-97 4.35e-26

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 92.22  E-value: 4.35e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSH-PSLFILPLTVLTISAREAGVGLALLIA 79
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQtPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 13786616  80 STRTHNTTNLKNLNLLQC 97
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
7-97 6.81e-11

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 53.72  E-value: 6.81e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616    7 LFFLAFMICTTGLIIHhNHLLSTLLCLEGMTLSVLLAL-TVLSLHSHPSLFILPLTVLTISAREAGVGLALLIASTRTHN 85
Cdd:pfam00420  5 LSGLLFLIGLYGLLLR-RNLLRVLLSLELMLNAVNLALvLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                         90
                 ....*....|..
gi 13786616   86 TTNLKNLNLLQC 97
Cdd:pfam00420 84 TDDVDSLNLLKG 95
 
Name Accession Description Interval E-value
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-97 4.35e-26

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 92.22  E-value: 4.35e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSH-PSLFILPLTVLTISAREAGVGLALLIA 79
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQtPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 13786616  80 STRTHNTTNLKNLNLLQC 97
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-97 1.81e-24

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 88.12  E-value: 1.81e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSHP-SLFILPLTVLTISAREAGVGLALLIA 79
Cdd:MTH00067  1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESlSYFSLPMFMLTFSACEASTGLALMVA 80

                        90
                ....*....|....*...
gi 13786616  80 STRTHNTTNLKNLNLLQC 97
Cdd:MTH00067 81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-97 6.20e-23

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 84.25  E-value: 6.20e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSHPSLF-ILPLTVLTISAREAGVGLALLIA 79
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFsAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 13786616  80 STRTHNTTNLKNLNLLQC 97
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-97 2.70e-18

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 72.66  E-value: 2.70e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSH-PSLFILPLTVLTISAREAGVGLALLIA 79
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHfTLASMMPIILLVFAACEAAVGLALLVM 80

                        90
                ....*....|....*...
gi 13786616  80 STRTHNTTNLKNLNLLQC 97
Cdd:MTH00107 81 VSNTYGTDYVQNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
7-97 6.81e-11

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 53.72  E-value: 6.81e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616    7 LFFLAFMICTTGLIIHhNHLLSTLLCLEGMTLSVLLAL-TVLSLHSHPSLFILPLTVLTISAREAGVGLALLIASTRTHN 85
Cdd:pfam00420  5 LSGLLFLIGLYGLLLR-RNLLRVLLSLELMLNAVNLALvLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHG 83

                         90
                 ....*....|..
gi 13786616   86 TTNLKNLNLLQC 97
Cdd:pfam00420 84 TDDVDSLNLLKG 95
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 7-95 2.37e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 52.25  E-value: 2.37e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   7 LFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSL-HSHPSLFILPLTVLTISAREAGVGLALLIASTRTHN 85
Cdd:MTH00181  4 VFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLlSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRTHG 83

                        90
                ....*....|
gi 13786616  86 TTNLKNLNLL 95
Cdd:MTH00181 84 SDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-96 2.11e-09

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 49.92  E-value: 2.11e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSL-HSHPSLFILPLTVLTISAREAGVGLALLIA 79
Cdd:MTH00043  1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLnYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                        90
                ....*....|....*..
gi 13786616  80 STRTHNTTNLKNLNLLQ 96
Cdd:MTH00043 81 LSRNHNSDLVASLNLLQ 97
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 12-97 4.36e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 46.51  E-value: 4.36e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616  12 FMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSHPSLFILpLTVLTISAREAGVGLALLIASTRTHNTTNLKN 91
Cdd:MTH00188 13 VVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLS-LVLLTFAACEASVGLALLVSLIRSHGSDYVSS 91


                ....*.
gi 13786616  92 LNLLQC 97
Cdd:MTH00188 92 LNLIKC 97
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-84 3.49e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 39.06  E-value: 3.49e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSHPSLFILpLTVLTISAREAGVGLALLIAS 80
Cdd:MTH00149  2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLF-LIILTFGACEASLGLSLLVSL 80


                ....
gi 13786616  81 TRTH 84
Cdd:MTH00149 81 IRLH 84
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 1-97 3.84e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 38.96  E-value: 3.84e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616   1 MTPVTTLFFLAFMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSHPSLFILPLTVLTISAREAGVGLALLIAS 80
Cdd:MTH00013  1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLALFIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLM 80

                        90
                ....*....|....*..
gi 13786616  81 TRTHNTTNLKNLNLLQC 97
Cdd:MTH00013 81 TRSYGNDMLKSLTSNKC 97
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 12-96 2.61e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 36.55  E-value: 2.61e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13786616  12 FMICTTGLIIHHNHLLSTLLCLEGMTLSVLLALTVLSLHSHPSL-FILPLTVLTISAREAGVGLALLIASTRTHNTTNLK 90
Cdd:MTH00180 13 FILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIgQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAVK 92


                ....*.
gi 13786616  91 NLNLLQ 96
Cdd:MTH00180 93 SLNLLR 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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