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Conserved domains on  [gi|257096048|ref|NP_079567|]
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steroid receptor RNA activator 1 isoform a [Mus musculus]

Protein Classification

SRA1 domain-containing protein( domain architecture ID 10538137)

SRA1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRA1 pfam07304
Steroid receptor RNA activator (SRA1); This family consists of several hypothetical mammalian ...
 78-215 2.07e-78

Steroid receptor RNA activator (SRA1); This family consists of several hypothetical mammalian steroid receptor RNA activator proteins. SRA-RNAs likely to encode stable proteins are widely expressed in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA and is classified as belonging to the growing family of functional non-coding RNAs.


:

Pssm-ID: 429397 [Multi-domain]  Cd Length: 147  Bit Score: 232.41  E-value: 2.07e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257096048   78 SSKASRPPPMGSCPATGVEPPSSPVIESETLIEDVLRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKK 157
Cdd:pfam07304   8 SVAPPPPPPGGPGPLPQVEPTDSPVSESEPVVEDVMSVLNQALDACRGTVRKQVCDDVSKRLRLLEDSWRSGKLSLPVRR 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 257096048  158 RMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAEKKSLSSEETKEEK 215
Cdd:pfam07304  88 RMDTLSQELQSGHWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAETRNLSPELLEPLE 145
 
Name Accession Description Interval E-value
SRA1 pfam07304
Steroid receptor RNA activator (SRA1); This family consists of several hypothetical mammalian ...
 78-215 2.07e-78

Steroid receptor RNA activator (SRA1); This family consists of several hypothetical mammalian steroid receptor RNA activator proteins. SRA-RNAs likely to encode stable proteins are widely expressed in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA and is classified as belonging to the growing family of functional non-coding RNAs.


Pssm-ID: 429397 [Multi-domain]  Cd Length: 147  Bit Score: 232.41  E-value: 2.07e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257096048   78 SSKASRPPPMGSCPATGVEPPSSPVIESETLIEDVLRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKK 157
Cdd:pfam07304   8 SVAPPPPPPGGPGPLPQVEPTDSPVSESEPVVEDVMSVLNQALDACRGTVRKQVCDDVSKRLRLLEDSWRSGKLSLPVRR 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 257096048  158 RMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAEKKSLSSEETKEEK 215
Cdd:pfam07304  88 RMDTLSQELQSGHWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAETRNLSPELLEPLE 145
 
Name Accession Description Interval E-value
SRA1 pfam07304
Steroid receptor RNA activator (SRA1); This family consists of several hypothetical mammalian ...
 78-215 2.07e-78

Steroid receptor RNA activator (SRA1); This family consists of several hypothetical mammalian steroid receptor RNA activator proteins. SRA-RNAs likely to encode stable proteins are widely expressed in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA and is classified as belonging to the growing family of functional non-coding RNAs.


Pssm-ID: 429397 [Multi-domain]  Cd Length: 147  Bit Score: 232.41  E-value: 2.07e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257096048   78 SSKASRPPPMGSCPATGVEPPSSPVIESETLIEDVLRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKK 157
Cdd:pfam07304   8 SVAPPPPPPGGPGPLPQVEPTDSPVSESEPVVEDVMSVLNQALDACRGTVRKQVCDDVSKRLRLLEDSWRSGKLSLPVRR 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 257096048  158 RMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAEKKSLSSEETKEEK 215
Cdd:pfam07304  88 RMDTLSQELQSGHWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAETRNLSPELLEPLE 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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