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Conserved domains on  [gi|130980075|ref|NP_060921|]
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centromere protein J [Homo sapiens]

Protein Classification

T-complex 10 C-terminal domain-containing protein( domain architecture ID 10537651)

T-complex 10 C-terminal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1152-1180 1.80e-11

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 59.75  E-value: 1.80e-11
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1152 EISHPDGKVEKVYKNGCRVILFPNGTRKE 1180
Cdd:pfam07202    2 EIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1261-1289 3.32e-09

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 53.21  E-value: 3.32e-09
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1261 EESIFPDGTIVRVQRDGNKLIEFNNGQRE 1289
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
SMC_N super family cl47134
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 886-1148 3.88e-09

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


The actual alignment was detected with superfamily member TIGR02169:

Pssm-ID: 481474 [Multi-domain]  Cd Length: 1164  Bit Score: 61.24  E-value: 3.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   886 ELKLNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKElaRIEEfKKE 965
Cdd:TIGR02169  722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIPE-IQA 798

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   966 EMRKLQKERKVFEKYT------TAARTFPDKKEREEIQTLKQQIADLR----------EDLKRKETKWSSTHSRLRSQIQ 1029
Cdd:TIGR02169  799 ELSKLEEEVSRIEARLreieqkLNRLTLEKEYLEKEIQELQEQRIDLKeqiksiekeiENLNGKKEELEEELEELEAALR 878

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  1030 MLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEvEKKDKLANTSVRFQNSQissgTQVEKYkknylpmqGNPPRRSKS 1109
Cdd:TIGR02169  879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIE-KKRKRLSELKAKLEALE----EELSEI--------EDPKGEDEE 945

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 130980075  1110 APPRDLgNLDKGQAASPR-----EPLEPLNFPDP-EYKEEEEDQD 1148
Cdd:TIGR02169  946 IPEEEL-SLEDVQAELQRveeeiRALEPVNMLAIqEYEEVLKRLD 989
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1225-1253 1.10e-05

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 43.19  E-value: 1.10e-05
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1225 EVLHFSSGQIEKHYPDGRKEITFPDQTVK 1253
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1296-1325 2.37e-04

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 39.34  E-value: 2.37e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 130980075  1296 KRREYPDGTVKTVYANGHQETKYRSGRIRV 1325
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
 
Name Accession Description Interval E-value
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1152-1180 1.80e-11

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 59.75  E-value: 1.80e-11
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1152 EISHPDGKVEKVYKNGCRVILFPNGTRKE 1180
Cdd:pfam07202    2 EIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1261-1289 3.32e-09

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 53.21  E-value: 3.32e-09
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1261 EESIFPDGTIVRVQRDGNKLIEFNNGQRE 1289
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 886-1148 3.88e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 61.24  E-value: 3.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   886 ELKLNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKElaRIEEfKKE 965
Cdd:TIGR02169  722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIPE-IQA 798

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   966 EMRKLQKERKVFEKYT------TAARTFPDKKEREEIQTLKQQIADLR----------EDLKRKETKWSSTHSRLRSQIQ 1029
Cdd:TIGR02169  799 ELSKLEEEVSRIEARLreieqkLNRLTLEKEYLEKEIQELQEQRIDLKeqiksiekeiENLNGKKEELEEELEELEAALR 878

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  1030 MLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEvEKKDKLANTSVRFQNSQissgTQVEKYkknylpmqGNPPRRSKS 1109
Cdd:TIGR02169  879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIE-KKRKRLSELKAKLEALE----EELSEI--------EDPKGEDEE 945

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 130980075  1110 APPRDLgNLDKGQAASPR-----EPLEPLNFPDP-EYKEEEEDQD 1148
Cdd:TIGR02169  946 IPEEEL-SLEDVQAELQRveeeiRALEPVNMLAIqEYEEVLKRLD 989
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
902-1047 6.57e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 57.23  E-value: 6.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  902 RSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIAdfeQQKAKELARIEEFKKEEMRKLQKERKVFEKYT 981
Cdd:COG4913   289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERELEERERRRARLE 365

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 130980075  982 TAART--FPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMER 1047
Cdd:COG4913   366 ALLAAlgLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
906-1073 9.71e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 50.06  E-value: 9.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  906 LREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEqQKAKELARIEEfKKEEMRKLQKERkvfEKYTTAAR 985
Cdd:PRK03918  236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKELKE-KAEEYIKLSEFY---EEYLDELR 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  986 TFPDKKER--EEIQTLKQQIADLREDLKRKEtkwssthsRLRSQIQMLVRENTDLREEIKVMERFRlDAWKRAEAIESSL 1063
Cdd:PRK03918  311 EIEKRLSRleEEINGIEERIKELEEKEERLE--------ELKKKLKELEKRLEELEERHELYEEAK-AKKEELERLKKRL 381

                         170
                  ....*....|
gi 130980075 1064 EVEKKDKLAN 1073
Cdd:PRK03918  382 TGLTPEKLEK 391
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1225-1253 1.10e-05

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 43.19  E-value: 1.10e-05
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1225 EVLHFSSGQIEKHYPDGRKEITFPDQTVK 1253
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1296-1325 2.37e-04

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 39.34  E-value: 2.37e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 130980075  1296 KRREYPDGTVKTVYANGHQETKYRSGRIRV 1325
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
alph_xenorhab_B NF033927
alpha-xenorhabdolysin family binary toxin subunit B;
912-1062 1.15e-03

alpha-xenorhabdolysin family binary toxin subunit B;


Pssm-ID: 411488 [Multi-domain]  Cd Length: 223  Bit Score: 41.85  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  912 ELETEIEKFKAENASLAKLRIERESA--LEKLRKEIADFEQQKAKELARIEEFKkEEMRKLQKERKVFEKYTTAAR---T 986
Cdd:NF033927    8 ALRKSAAKIANKLDDLSQINLREATLdlLAQLQEQIAELEAQIAALESKLNELA-EDRKVIIEAIDLIEKYNIADLfkdL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  987 FPDKKE-------REEIQTLKQQIADLREDLkrkeTKWSS-------THSR--LRSQIQMLVRENTDLREEIKVMErFRL 1050
Cdd:NF033927   87 LPTAEEidslglpPPEKDLVKAAIERLKKLL----GKISEgltyidlVEARdkLRDRINALLAESRTLDKDIKALA-GKL 161

                         170
                  ....*....|..
gi 130980075 1051 DAWKRAEAIESS 1062
Cdd:NF033927  162 EELTAIAAIDEE 173
OmpH pfam03938
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 908-1005 2.36e-03

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 461098 [Multi-domain]  Cd Length: 140  Bit Score: 39.87  E-value: 2.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   908 EKIIEletEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEKYTTAARTF 987
Cdd:pfam03938    8 QKILE---ESPEGKAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQE 84

                           90
                   ....*....|....*...
gi 130980075   988 PDKKEREEIQTLKQQIAD 1005
Cdd:pfam03938   85 LQKKQQELLQPIQDKINK 102
 
Name Accession Description Interval E-value
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1152-1180 1.80e-11

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 59.75  E-value: 1.80e-11
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1152 EISHPDGKVEKVYKNGCRVILFPNGTRKE 1180
Cdd:pfam07202    2 EIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1261-1289 3.32e-09

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 53.21  E-value: 3.32e-09
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1261 EESIFPDGTIVRVQRDGNKLIEFNNGQRE 1289
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 886-1148 3.88e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 61.24  E-value: 3.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   886 ELKLNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKElaRIEEfKKE 965
Cdd:TIGR02169  722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIPE-IQA 798

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   966 EMRKLQKERKVFEKYT------TAARTFPDKKEREEIQTLKQQIADLR----------EDLKRKETKWSSTHSRLRSQIQ 1029
Cdd:TIGR02169  799 ELSKLEEEVSRIEARLreieqkLNRLTLEKEYLEKEIQELQEQRIDLKeqiksiekeiENLNGKKEELEEELEELEAALR 878

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  1030 MLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEvEKKDKLANTSVRFQNSQissgTQVEKYkknylpmqGNPPRRSKS 1109
Cdd:TIGR02169  879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIE-KKRKRLSELKAKLEALE----EELSEI--------EDPKGEDEE 945

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 130980075  1110 APPRDLgNLDKGQAASPR-----EPLEPLNFPDP-EYKEEEEDQD 1148
Cdd:TIGR02169  946 IPEEEL-SLEDVQAELQRveeeiRALEPVNMLAIqEYEEVLKRLD 989
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 898-1079 9.45e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.07  E-value: 9.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   898 GDNARSQVL---REKIIELETEIEKFKAENAS----LAKLRIER---ESALEKLRKEIADFEQQKAKELARIEEFKKE-- 965
Cdd:TIGR02168  664 GSAKTNSSIlerRREIEELEEKIEELEEKIAElekaLAELRKELeelEEELEQLRKELEELSRQISALRKDLARLEAEve 743

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   966 ----EMRKLQKERKVFEKYTTAART-----FPDKKERE-EIQTLKQQIADLREDLKrketKWSSTHSRLRSQIQMLVREN 1035
Cdd:TIGR02168  744 qleeRIAQLSKELTELEAEIEELEErleeaEEELAEAEaEIEELEAQIEQLKEELK----ALREALDELRAELTLLNEEA 819

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 130980075  1036 TDLREEIKVMERFRLDAWKRAEAIESSLEVEKKDKLANTSVRFQ 1079
Cdd:TIGR02168  820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
902-1047 6.57e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 57.23  E-value: 6.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  902 RSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIAdfeQQKAKELARIEEFKKEEMRKLQKERKVFEKYT 981
Cdd:COG4913   289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERELEERERRRARLE 365

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 130980075  982 TAART--FPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMER 1047
Cdd:COG4913   366 ALLAAlgLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
901-1058 6.80e-08

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 57.17  E-value: 6.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  901 ARSQVLREKIIELETEIEKFKAENASLaklrierESALEKLRKEIADFEqqkakelARIEEFKKEEMRKLQKERKVfeky 980
Cdd:COG2433   406 RELTEEEEEIRRLEEQVERLEAEVEEL-------EAELEEKDERIERLE-------RELSEARSEERREIRKDREI---- 467

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 130980075  981 ttaartfpdKKEREEIQTLKQQIADLREDLKRKETKWssthSRLRSQIQMLVRENTdlrEEIKVMERFRLDAWKRAEA 1058
Cdd:COG2433   468 ---------SRLDREIERLERELEEERERIEELKRKL----ERLKELWKLEHSGEL---VPVKVVEKFTKEAIRRLEE 529
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 900-1073 8.89e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.87  E-value: 8.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  900 NARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEfkKEEMRKLQKERKVFEK 979
Cdd:COG1196   238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR--LEQDIARLEERRRELE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  980 yTTAARtfpdkkEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMERfRLDAWKRAEAI 1059
Cdd:COG1196   316 -ERLEE------LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE-AEEELEELAEE 387

                         170
                  ....*....|....
gi 130980075 1060 ESSLEVEKKDKLAN 1073
Cdd:COG1196   388 LLEALRAAAELAAQ 401
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 900-1083 1.58e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.10  E-value: 1.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  900 NARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEK 979
Cdd:COG1196   287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  980 YTTAARTFPDKKE-----REEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWK 1054
Cdd:COG1196   367 LLEAEAELAEAEEeleelAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446

                         170       180
                  ....*....|....*....|....*....
gi 130980075 1055 RAEAIESSLEVEKKDKLANTSVRFQNSQI 1083
Cdd:COG1196   447 AAEEEAELEEEEEALLELLAELLEEAALL 475
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 900-1072 3.11e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.94  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  900 NARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKlqkerkvfek 979
Cdd:COG1196   280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA---------- 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  980 yttaartfpdKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAI 1059
Cdd:COG1196   350 ----------EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419

                         170
                  ....*....|...
gi 130980075 1060 ESSLEVEKKDKLA 1072
Cdd:COG1196   420 EEELEELEEALAE 432
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
883-1072 4.08e-07

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 54.39  E-value: 4.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  883 LGNELK--LNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRIERESA---LEKLRKEIADFEQQKA---- 953
Cdd:COG4717    51 LEKEADelFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELeaeLEELREELEKLEKLLQllpl 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  954 -KELARIEEFKKEEMRKLQKERKVFEKYTTAartfpdkkeREEIQTLKQQIADLREDLKRKETKWSSTHsrlRSQIQMLV 1032
Cdd:COG4717   131 yQELEALEAELAELPERLEELEERLEELREL---------EEELEELEAELAELQEELEELLEQLSLAT---EEELQDLA 198

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 130980075 1033 RENTDLREEIKVMERFRLDAWKRAEAIESSLEVEKKDKLA 1072
Cdd:COG4717   199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 904-1042 1.99e-06

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 50.69  E-value: 1.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  904 QVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQ-----KAKELARIEefkkEEMRKLQKERKVFE 978
Cdd:COG1579    34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrNNKEYEALQ----KEIESLKRRISDLE 109

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 130980075  979 KYTTAARTFPDKKErEEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEI 1042
Cdd:COG1579   110 DEILELMERIEELE-EELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 906-1046 2.02e-06

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 50.69  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  906 LREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKK--------EEMRKLQKErkvf 977
Cdd:COG1579    22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgnvrnnKEYEALQKE---- 97

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 130980075  978 EKYTTAARTFPDKKERE---EIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVME 1046
Cdd:COG1579    98 IESLKRRISDLEDEILElmeRIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 901-1047 2.80e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.98  E-value: 2.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   901 ARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFkKEEMRKLQKERKVFEKY 980
Cdd:TIGR02168  344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL-EARLERLEDRRERLQQE 422

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 130980075   981 TTAARTFPDKKEREEIQ----TLKQQIADLREDLKRKETKWSSTHSRLR---SQIQMLVRENTDLREEIKVMER 1047
Cdd:TIGR02168  423 IEELLKKLEEAELKELQaeleELEEELEELQEELERLEEALEELREELEeaeQALDAAERELAQLQARLDSLER 496
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
900-1079 3.36e-06

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 51.56  E-value: 3.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  900 NARSQVLREKIIELETEIEKFKAENASLAkLRIERESALEKLrkeiADFEQQKAKELARIEEfKKEEMRKLQKERKvfek 979
Cdd:COG3206   181 EEQLPELRKELEEAEAALEEFRQKNGLVD-LSEEAKLLLQQL----SELESQLAEARAELAE-AEARLAALRAQLG---- 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  980 ytTAARTFPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHS---RLRSQIQMLVRENTDLREEIKVMERFRLDAWK-R 1055
Cdd:COG3206   251 --SGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPdviALRAQIAALRAQLQQEAQRILASLEAELEALQaR 328

                         170       180
                  ....*....|....*....|....*.
gi 130980075 1056 AEAIESSLEVEKK--DKLANTSVRFQ 1079
Cdd:COG3206   329 EASLQAQLAQLEArlAELPELEAELR 354
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 906-1064 4.17e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.60  E-value: 4.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   906 LREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKakelarieEFKKEEMRKLQKERKVFEKYTTAAR 985
Cdd:TIGR02168  258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK--------QILRERLANLERQLEELEAQLEELE 329

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   986 TFPDKKE------REEIQTLKQQIADLREDLKRKETKWSSTHSR---LRSQIQMLVRENTDLREEIKVMERFRLDAWKRA 1056
Cdd:TIGR02168  330 SKLDELAeelaelEEKLEELKEELESLEAELEELEAELEELESRleeLEEQLETLRSKVAQLELQIASLNNEIERLEARL 409


                   ....*...
gi 130980075  1057 EAIESSLE 1064
Cdd:TIGR02168  410 ERLEDRRE 417
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 900-1074 6.00e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.83  E-value: 6.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   900 NARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEK 979
Cdd:TIGR02168  301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   980 YTTAARtfpdkkereEIQTLKQQIADLREDLkrketkwssthSRLRSQIQMLVRENTDLREEIkvmeRFRLDAWKRAEAI 1059
Cdd:TIGR02168  381 LETLRS---------KVAQLELQIASLNNEI-----------ERLEARLERLEDRRERLQQEI----EELLKKLEEAELK 436

                          170
                   ....*....|....*
gi 130980075  1060 ESSLEVEKKDKLANT 1074
Cdd:TIGR02168  437 ELQAELEELEEELEE 451
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
906-1073 9.71e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 50.06  E-value: 9.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  906 LREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEqQKAKELARIEEfKKEEMRKLQKERkvfEKYTTAAR 985
Cdd:PRK03918  236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKELKE-KAEEYIKLSEFY---EEYLDELR 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  986 TFPDKKER--EEIQTLKQQIADLREDLKRKEtkwssthsRLRSQIQMLVRENTDLREEIKVMERFRlDAWKRAEAIESSL 1063
Cdd:PRK03918  311 EIEKRLSRleEEINGIEERIKELEEKEERLE--------ELKKKLKELEKRLEELEERHELYEEAK-AKKEELERLKKRL 381

                         170
                  ....*....|
gi 130980075 1064 EVEKKDKLAN 1073
Cdd:PRK03918  382 TGLTPEKLEK 391
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1225-1253 1.10e-05

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 43.19  E-value: 1.10e-05
                           10        20
                   ....*....|....*....|....*....
gi 130980075  1225 EVLHFSSGQIEKHYPDGRKEITFPDQTVK 1253
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
898-1060 1.76e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.53  E-value: 1.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  898 GDNARSQV--LREKIIELETEIEKFKAENASLAKLR---IERESALEKLRKeiADFEQQKAKELAR-IEEfKKEEMRKLQ 971
Cdd:COG4913   605 GFDNRAKLaaLEAELAELEEELAEAEERLEALEAELdalQERREALQRLAE--YSWDEIDVASAEReIAE-LEAELERLD 681

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  972 KERKVFEKYTTAArtfpdKKEREEIQTLKQQIADLREDLKRKETKWSsthsRLRSQIQMLVRENTDLREEIKVMERFRLD 1051
Cdd:COG4913   682 ASSDDLAALEEQL-----EELEAELEELEEELDELKGEIGRLEKELE----QAEEELDELQDRLEAAEDLARLELRALLE 752


                  ....*....
gi 130980075 1052 AWKRAEAIE 1060
Cdd:COG4913   753 ERFAAALGD 761
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 888-1028 2.20e-05

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 48.92  E-value: 2.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  888 KLNISQDQPPgdnARSQVLREKIIELETEIEKFKAENASLAKLRieresaLEKLRKEIADFEQQKAKELARIEEfKKEEM 967
Cdd:COG0542   401 RVRMEIDSKP---EELDELERRLEQLEIEKEALKKEQDEASFER------LAELRDELAELEEELEALKARWEA-EKELI 470

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 130980075  968 RKLQkerkvfekyttaartfpdkKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQI 1028
Cdd:COG0542   471 EEIQ-------------------ELKEELEQRYGKIPELEKELAELEEELAELAPLLREEV 512
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 885-1027 2.28e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.22  E-value: 2.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  885 NELKLNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKaKELARIEEFKK 964
Cdd:COG4942   120 PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER-AALEALKAERQ 198

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 130980075  965 EEMRKLQKERkvfekyttaartfpdKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQ 1027
Cdd:COG4942   199 KLLARLEKEL---------------AELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 878-1064 2.52e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.91  E-value: 2.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   878 KSDSHLGNELKLNISQDQPPGDNARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEqqkaKELA 957
Cdd:TIGR02169  651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE----KEIE 726

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   958 RIEEfKKEEMRKLQKERKVFEKYTTAARTfpdkKEREEIQTLKQQIADLREDLKRKETKWSSTHSRL-RSQIQMLVRENT 1036
Cdd:TIGR02169  727 QLEQ-EEEKLKERLEELEEDLSSLEQEIE----NVKSELKELEARIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELS 801

                          170       180
                   ....*....|....*....|....*...
gi 130980075  1037 DLREEIKVMErfrldawKRAEAIESSLE 1064
Cdd:TIGR02169  802 KLEEEVSRIE-------ARLREIEQKLN 822
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
923-1064 6.17e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.73  E-value: 6.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  923 ENASLAKLRIER-----ESALEKLRKEIADFEQ-----------QKAKEL-ARIEEFkkEEMRKLQKERKvfekyTTAAR 985
Cdd:PRK02224  169 ERASDARLGVERvlsdqRGSLDQLKAQIEEKEEkdlherlngleSELAELdEEIERY--EEQREQARETR-----DEADE 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  986 TFPDKKE-REEIQTLKQQIADLREDLKRKETKWSSTHSR---LRSQIQMLVRENTDLREE-------IKVMERFRLDAWK 1054
Cdd:PRK02224  242 VLEEHEErREELETLEAEIEDLRETIAETEREREELAEEvrdLRERLEELEEERDDLLAEaglddadAEAVEARREELED 321

                         170
                  ....*....|
gi 130980075 1055 RAEAIESSLE 1064
Cdd:PRK02224  322 RDEELRDRLE 331
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 912-1072 7.10e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.24  E-value: 7.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  912 ELETEIEKFKAEnASLAKLRiERESALEKLRKEIADFEQQKAKELARIEEF--KKEEMR-KLQKERKVFEKYTTAARtfp 988
Cdd:COG1196   217 ELKEELKELEAE-LLLLKLR-ELEAELEELEAELEELEAELEELEAELAELeaELEELRlELEELELELEEAQAEEY--- 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  989 dkKEREEIQTLKQQIADLREDLKRKEtkwsSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEVEKK 1068
Cdd:COG1196   292 --ELLAELARLEQDIARLEERRRELE----ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365


                  ....
gi 130980075 1069 DKLA 1072
Cdd:COG1196   366 ALLE 369
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
907-1077 9.26e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.96  E-value: 9.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  907 REKIIELETEIEKFKAENASLAKlRIERESALEKLRKEIADFEQQKAKELARIEEFK---KEEMRKLQKERKVFEKYTTA 983
Cdd:PRK02224  474 RERVEELEAELEDLEEEVEEVEE-RLERAEDLVEAEDRIERLEERREDLEELIAERRetiEEKRERAEELRERAAELEAE 552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  984 ARTfpdkkEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRS--QIQMLVRENTDLREEIkvmERFRLdawKRAEAIEs 1061
Cdd:PRK02224  553 AEE-----KREAAAEAEEEAEEAREEVAELNSKLAELKERIESleRIRTLLAAIADAEDEI---ERLRE---KREALAE- 620

                         170
                  ....*....|....*.
gi 130980075 1062 sLEVEKKDKLANTSVR 1077
Cdd:PRK02224  621 -LNDERRERLAEKRER 635
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
901-1032 1.27e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 46.30  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  901 ARSQVLREKIIELETEIEKFKAENASLAklriERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEKY 980
Cdd:COG4717   132 QELEALEAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 130980075  981 TTAArtfpdkkeREEIQTLKQQIADLREDLKRKETKWSSTH--SRLRSQIQMLV 1032
Cdd:COG4717   208 LAEL--------EEELEEAQEELEELEEELEQLENELEAAAleERLKEARLLLL 253
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 912-1071 1.85e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 46.21  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   912 ELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKE-RKVFEKYTTAARTFPDK 990
Cdd:TIGR02169  234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEK 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   991 KerEEIQTLKQQIADLREDLKRKEtkwsSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAI---------ES 1061
Cdd:TIGR02169  314 E--RELEDAEERLAKLEAEIDKLL----AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetrdEL 387

                          170
                   ....*....|
gi 130980075  1062 SLEVEKKDKL 1071
Cdd:TIGR02169  388 KDYREKLEKL 397
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 1296-1325 2.37e-04

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 39.34  E-value: 2.37e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 130980075  1296 KRREYPDGTVKTVYANGHQETKYRSGRIRV 1325
Cdd:pfam07202    1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
906-1069 3.31e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.05  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  906 LREKIIELETEIEKFKAENASLAKLrierESALEKLRKEIADFEQQKAKELARIEEFK----KEEMRKLQKERKVFEKYT 981
Cdd:PRK03918  530 LKEKLIKLKGEIKSLKKELEKLEEL----KKKLAELEKKLDELEEELAELLKELEELGfesvEELEERLKELEPFYNEYL 605

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  982 TAartfpdKKEREEIQTLKQQIADLREDLKRKETKWSSTHSR---LRSQIQMLVRENTD-----LREEI--KVMERFRLD 1051
Cdd:PRK03918  606 EL------KDAEKELEREEKELKKLEEELDKAFEELAETEKRleeLRKELEELEKKYSEeeyeeLREEYleLSRELAGLR 679

                         170
                  ....*....|....*...
gi 130980075 1052 AwkRAEAIESSLEVEKKD 1069
Cdd:PRK03918  680 A--ELEELEKRREEIKKT 695
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
904-1064 4.62e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.76  E-value: 4.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  904 QVLREKIIELETEIEKFKAENASLAKLRIER-ESALEKLRKEIADFeQQKAKELARIEEfKKEEMRKLQKE-RKVFEKYT 981
Cdd:COG4717    45 AMLLERLEKEADELFKPQGRKPELNLKELKElEEELKEAEEKEEEY-AELQEELEELEE-ELEELEAELEElREELEKLE 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  982 TAARTFPDKKEREEIQTLKQQIADLREDLKRKETKWssthSRLRSQIQMLVRENTDLREEI-KVMERFRLDAWKRAEAIE 1060
Cdd:COG4717   123 KLLQLLPLYQELEALEAELAELPERLEELEERLEEL----RELEEELEELEAELAELQEELeELLEQLSLATEEELQDLA 198


                  ....
gi 130980075 1061 SSLE 1064
Cdd:COG4717   199 EELE 202
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
901-1070 5.22e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.67  E-value: 5.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  901 ARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKelarIEEFKKEEMRKLQKERKVFEKy 980
Cdd:PRK03918  186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE----IEELEKELESLEGSKRKLEEK- 260

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  981 ttaartfpdKKEREE-IQTLKQQIADLREDLKR-KETKWSST--------HSRLRSQIQMLVRENTDLREEIKVMERFRL 1050
Cdd:PRK03918  261 ---------IRELEErIEELKKEIEELEEKVKElKELKEKAEeyiklsefYEEYLDELREIEKRLSRLEEEINGIEERIK 331

                         170       180
                  ....*....|....*....|
gi 130980075 1051 DAWKRAEAIEsslEVEKKDK 1070
Cdd:PRK03918  332 ELEEKEERLE---ELKKKLK 348
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 906-1064 6.16e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.29  E-value: 6.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   906 LREKIIELETEIEKFKAENASLAKL------RIERESALEKLR--KEIADFEQQKAKeLARIEEFKKEEMRKLQKER--- 974
Cdd:TIGR02169  249 LEEELEKLTEEISELEKRLEEIEQLleelnkKIKDLGEEEQLRvkEKIGELEAEIAS-LERSIAEKERELEDAEERLakl 327

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   975 -----KVFEKYTTAARTFPDKKER-----EEIQTLKQQIADLREDLKRKETKwsstHSRLRSQIQMLVRENTDLREEIKV 1044
Cdd:TIGR02169  328 eaeidKLLAEIEELEREIEEERKRrdkltEEYAELKEELEDLRAELEEVDKE----FAETRDELKDYREKLEKLKREINE 403

                          170       180
                   ....*....|....*....|
gi 130980075  1045 MERFRLDAWKRAEAIESSLE 1064
Cdd:TIGR02169  404 LKRELDRLQEELQRLSEELA 423
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
935-1073 7.12e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 7.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  935 ESALEKLRKEIADFEQQKAKELARIEEFKkEEMRKLQKERKVFEKYTTAARTFPDKKE-REEIQTLKQQIADLREDlkrk 1013
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALE-AELDALQERREALQRLAEYSWDEIDVASaEREIAELEAELERLDAS---- 683

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075 1014 etkwSSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEvEKKDKLAN 1073
Cdd:COG4913   684 ----SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEA 738
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 906-1069 8.02e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 8.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  906 LREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEE---MRKLQKERKVFEK--- 979
Cdd:COG4942    32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaelRAELEAQKEELAEllr 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  980 --YTTAARTFP-------------------------DKKEREEIQTLKQQIADLREDLKRKetkwsstHSRLRSQIQMLV 1032
Cdd:COG4942   112 alYRLGRQPPLalllspedfldavrrlqylkylapaRREQAEELRADLAELAALRAELEAE-------RAELEALLAELE 184

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 130980075 1033 RENTDLREEIKVMERFRLDAWKRAEAIESSLEVEKKD 1069
Cdd:COG4942   185 EERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 906-1043 1.03e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.52  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   906 LREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEfKKEEMRKLQKERKvfekyTTAAR 985
Cdd:TIGR02169  390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED-KALEIKKQEWKLE-----QLAAD 463

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 130980075   986 TfpdKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRlRSQIQMLVRENTDLREEIK 1043
Cdd:TIGR02169  464 L---SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-ARASEERVRGGRAVEEVLK 517
alph_xenorhab_B NF033927
alpha-xenorhabdolysin family binary toxin subunit B;
912-1062 1.15e-03

alpha-xenorhabdolysin family binary toxin subunit B;


Pssm-ID: 411488 [Multi-domain]  Cd Length: 223  Bit Score: 41.85  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  912 ELETEIEKFKAENASLAKLRIERESA--LEKLRKEIADFEQQKAKELARIEEFKkEEMRKLQKERKVFEKYTTAAR---T 986
Cdd:NF033927    8 ALRKSAAKIANKLDDLSQINLREATLdlLAQLQEQIAELEAQIAALESKLNELA-EDRKVIIEAIDLIEKYNIADLfkdL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  987 FPDKKE-------REEIQTLKQQIADLREDLkrkeTKWSS-------THSR--LRSQIQMLVRENTDLREEIKVMErFRL 1050
Cdd:NF033927   87 LPTAEEidslglpPPEKDLVKAAIERLKKLL----GKISEgltyidlVEARdkLRDRINALLAESRTLDKDIKALA-GKL 161

                         170
                  ....*....|..
gi 130980075 1051 DAWKRAEAIESS 1062
Cdd:NF033927  162 EELTAIAAIDEE 173
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 901-1069 1.16e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.52  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   901 ARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQqkakELARIEEFKKEemrkLQKERKVfeky 980
Cdd:TIGR02169  378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINE----LEEEKED---- 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   981 ttaartfpdkkEREEIQTLKQQIADLREDLKrketKWSSTHSRLRSQIQMLVRENTDLREEIKVMERfRLDAWKRAEAIE 1060
Cdd:TIGR02169  446 -----------KALEIKKQEWKLEQLAADLS----KYEQELYDLKEEYDRVEKELSKLQRELAEAEA-QARASEERVRGG 509


                   ....*....
gi 130980075  1061 SSLEVEKKD 1069
Cdd:TIGR02169  510 RAVEEVLKA 518
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
906-1064 1.30e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 43.11  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  906 LREKIIELETEIEKFK------AENASLAKLRI----ERESALEKLRKEIADFEQQKAKELARIEEFKkEEMRKLQKERK 975
Cdd:PRK02224  211 LESELAELDEEIERYEeqreqaRETRDEADEVLeeheERREELETLEAEIEDLRETIAETEREREELA-EEVRDLRERLE 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  976 VFEKYTTAARtfpDKKEREEIQtlKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWKR 1055
Cdd:PRK02224  290 ELEEERDDLL---AEAGLDDAD--AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE 364


                  ....*....
gi 130980075 1056 AEAIESSLE 1064
Cdd:PRK02224  365 AAELESELE 373
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 900-993 1.56e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.44  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  900 NARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADfEQQKAKELARIEEFKKEEMRKLQKERKVFEK 979
Cdd:COG4942   163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAE-LAAELAELQQEAEELEALIARLEAEAAAAAE 241

                          90
                  ....*....|....
gi 130980075  980 yTTAARTFPDKKER 993
Cdd:COG4942   242 -RTPAAGFAALKGK 254
PTZ00121 PTZ00121
MAEBL; Provisional
 908-1073 1.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  908 EKIIELETEIEKFKAENASLA---KLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEE----MRKLQKERKVFEky 980
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAeeaKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEeenkIKAAEEAKKAEE-- 1672

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  981 ttaartfpDKKEREEIQTLKQQIADLREDLKRKETKwSSTHSRLRSQIQMLVRENTDLREE-----IKVMERFRLDAWKR 1055
Cdd:PTZ00121 1673 --------DKKKAEEAKKAEEDEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAeeenkIKAEEAKKEAEEDK 1743

                         170
                  ....*....|....*...
gi 130980075 1056 AEAIESSLEVEKKDKLAN 1073
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAH 1761
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 928-1069 1.75e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 42.76  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  928 AKLRIERES---ALEKLRKEIADFEQQKakelariEEFKKEEmrklqkerkvfekyttaartfpDKKEREEIQTLKQQIA 1004
Cdd:COG0542   400 ARVRMEIDSkpeELDELERRLEQLEIEK-------EALKKEQ----------------------DEASFERLAELRDELA 450

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 130980075 1005 DLREDLKRKETKWSSTHSRLrSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAIESSL--EVEKKD 1069
Cdd:COG0542   451 ELEEELEALKARWEAEKELI-EEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLreEVTEED 516
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
907-1077 1.80e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.74  E-value: 1.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  907 REKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQ------QKAKELARIEEFKKEEMRKLQKERKVFEKY 980
Cdd:PRK03918  147 REKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENieelikEKEKELEEVLREINEISSELPELREELEKL 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  981 TTAARTFpdKKEREEIQTLKQQIADLREDLKRKETKWSSthsrLRSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAIE 1060
Cdd:PRK03918  227 EKEVKEL--EELKEEIEELEKELESLEGSKRKLEEKIRE----LEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE 300

                         170
                  ....*....|....*..
gi 130980075 1061 ssLEVEKKDKLANTSVR 1077
Cdd:PRK03918  301 --FYEEYLDELREIEKR 315
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 925-1033 1.92e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.06  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  925 ASLAKLRIERESALEKLRKEIadfeQQKAKELARIeefkKEEMRKLQKERKVFEKYTTAArtfpdkkeREEIQTLKQQIA 1004
Cdd:COG4942    16 AAQADAAAEAEAELEQLQQEI----AELEKELAAL----KKEEKALLKQLAALERRIAAL--------ARRIRALEQELA 79

                          90       100
                  ....*....|....*....|....*....
gi 130980075 1005 DLREDLKRKETKWSSTHSRLRSQIQMLVR 1033
Cdd:COG4942    80 ALEAELAELEKEIAELRAELEAQKEELAE 108
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 906-1050 2.19e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 42.51  E-value: 2.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  906 LREKIIE-----LETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEKY 980
Cdd:PRK00409  499 LPENIIEeakklIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 130980075  981 TTAArtfpdKKEREE-IQTLKQQIADLREDLKRKETKwsSTHSRLRSQIQMLVRENTDLRE---EIKVMERFRL 1050
Cdd:PRK00409  579 IKEA-----KKEADEiIKELRQLQKGGYASVKAHELI--EARKRLNKANEKKEKKKKKQKEkqeELKVGDEVKY 645
OmpH pfam03938
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 908-1005 2.36e-03

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 461098 [Multi-domain]  Cd Length: 140  Bit Score: 39.87  E-value: 2.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   908 EKIIEletEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQKERKVFEKYTTAARTF 987
Cdd:pfam03938    8 QKILE---ESPEGKAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQE 84

                           90
                   ....*....|....*...
gi 130980075   988 PDKKEREEIQTLKQQIAD 1005
Cdd:pfam03938   85 LQKKQQELLQPIQDKINK 102
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 901-1047 2.45e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 2.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  901 ARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFK--KEEMRKLQKERKVFE 978
Cdd:COG1196   665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEeqLEAEREELLEELLEE 744

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  979 KYTTAARTFPDKKEREEIQTLKQQIADLREDLKR------------KETKwsSTHSRLRSQIQMLVRENTDLREEIKVME 1046
Cdd:COG1196   745 EELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaieeyEELE--ERYDFLSEQREDLEEARETLEEAIEEID 822


                  .
gi 130980075 1047 R 1047
Cdd:COG1196   823 R 823
PRK12704 PRK12704
phosphodiesterase; Provisional
 907-1059 2.50e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 2.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  907 REKIIELETEIEKFKAEnasLAKLRIERESALEKLRKEIADFEQQKAKELARIE----EFKKEEMRKLQKERKVFEKYTT 982
Cdd:PRK12704   56 KEALLEAKEEIHKLRNE---FEKELRERRNELQKLEKRLLQKEENLDRKLELLEkreeELEKKEKELEQKQQELEKKEEE 132

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 130980075  983 AartfpDKKEREEIQTLkQQIADLREDLKRKETKwSSTHSRLRSQIQMLVREntdlreeikVMERFRLDAWKRAEAI 1059
Cdd:PRK12704  133 L-----EELIEEQLQEL-ERISGLTAEEAKEILL-EKVEEEARHEAAVLIKE---------IEEEAKEEADKKAKEI 193
HlpA COG2825
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ...
 901-973 2.59e-03

Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442073 [Multi-domain]  Cd Length: 171  Bit Score: 40.20  E-value: 2.59e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 130980075  901 ARSQVLREKIIELETEIEKFKAENASL-AKLRIERESALEKLRKEIADFEQQKAKELARIEEfkkEEMRKLQKE 973
Cdd:COG2825    54 KRQAELQKLEKELQALQEKLQKEAATLsEEERQKKERELQKKQQELQRKQQEAQQDLQKRQQ---ELLQPILEK 124
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 938-1072 2.62e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.06  E-value: 2.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  938 LEKLRKEIADFEQQKAKELARIEEFKKEemrkLQKERKVFEKYTTAArtfpdKKEREEIQTLKQQIADLREDLKRKETKw 1017
Cdd:COG1579    12 LQELDSELDRLEHRLKELPAELAELEDE----LAALEARLEAAKTEL-----EDLEKEIKRLELEIEEVEARIKKYEEQ- 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 130980075 1018 SSTHSRLRsQIQMLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEvEKKDKLA 1072
Cdd:COG1579    82 LGNVRNNK-EYEALQKEIESLKRRISDLEDEILELMERIEELEEELA-ELEAELA 134
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
883-1025 3.15e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.93  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  883 LGNELKLNISQDQPPGDNARSQVLREKIIELETEIekfkaenASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEF 962
Cdd:COG3206   245 LRAQLGSGPDALPELLQSPVIQQLRAQLAELEAEL-------AELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 130980075  963 KKEEMRKLQKERKVFEKYTTAArtfpdKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLR 1025
Cdd:COG3206   318 LEAELEALQAREASLQAQLAQL-----EARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
OmpH pfam03938
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 900-973 3.17e-03

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 461098 [Multi-domain]  Cd Length: 140  Bit Score: 39.48  E-value: 3.17e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 130980075   900 NARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELariEEFKKEEMRKLQKE 973
Cdd:pfam03938   29 KKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQEL---QKKQQELLQPIQDK 99
PTZ00121 PTZ00121
MAEBL; Provisional
 907-1145 4.81e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 4.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  907 REKIIELETEIEKFKAENASLAKLRIERESALEKLRKEiadfEQQKAKELARIEEFKK-EEMRKLQKERKVFEkyTTAAR 985
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE----EAKKADEAKKAEEAKKaDEAKKAEEKKKADE--LKKAE 1555

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  986 TFPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEV 1065
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075 1066 EKKDKLANTSVRfQNSQISSGTQVEKYKKNYLPMQGNPPRRSKSAPPRDLGNLDKGQAASPREPLEPLNFPDPEYKEEEE 1145
Cdd:PTZ00121 1636 EQLKKKEAEEKK-KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
MAT1 pfam06391
CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for ...
 910-1041 5.44e-03

CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for cyclin-dependent kinase-activating kinase (CAK), which interacts with the transcription factor TFIIH. The domain found to the N-terminal side of this domain is a C3HC4 RING finger.


Pssm-ID: 461894 [Multi-domain]  Cd Length: 202  Bit Score: 39.53  E-value: 5.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   910 IIELETEIEKFKAENASLAKLRIERESA----LEKLRKEIADFEQQKAKELARIEEfkKEEMRKLQKERKVFEKYTTAAR 985
Cdd:pfam06391   63 VEETEKKIEQYEKENKDLILKNKMKLSQeeeeLEELLELEKREKEERRKEEKQEEE--EEKEKKEKAKQELIDELMTSNK 140

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 130980075   986 TFPDKKEREEiQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREE 1041
Cdd:pfam06391  141 DAEEIIAQHK-KTAKKRKSERRRKLEELNRVLEQKPTQFSTGIKFGQLPVPKIEEG 195
PTZ00121 PTZ00121
MAEBL; Provisional
 839-1070 5.50e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 5.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  839 KRKIAPVKRGEDLSKSRRSRSpptsELMMKFFPSLKPKPKSDSHLGNELKLNISQ--------DQPPGDNARSQVLREKI 910
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARI----EEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkaeeekKKVEQLKKKEAEEKKKA 1649

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  911 IELETEIEKFKAENASLAKLRIERESALEKLRKEIADfEQQKAKELARIEEFKK--EEMRKLQKERKvfekyttaaRTFP 988
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED-EKKAAEALKKEAEEAKkaEELKKKEAEEK---------KKAE 1719

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  989 DKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIKVMERFRLDAWKRAEAIESSLEVEKK 1068
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799


                  ..
gi 130980075 1069 DK 1070
Cdd:PTZ00121 1800 IK 1801
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 901-1049 5.61e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.26  E-value: 5.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   901 ARSQVLRE-----KIIELETEIEKFKAENAS-----LAKLRIERESALEKLRKEiaDFEQQKAKELARIEEF----KKEE 966
Cdd:pfam17380  401 ARKVKILEeerqrKIQQQKVEMEQIRAEQEEarqreVRRLEEERAREMERVRLE--EQERQQQVERLRQQEEerkrKKLE 478

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075   967 MRKLQKE--------RKVFEKYTTAARTFPDKKER------EEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLV 1032
Cdd:pfam17380  479 LEKEKRDrkraeeqrRKILEKELEERKQAMIEEERkrklleKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQM 558

                          170
                   ....*....|....*..
gi 130980075  1033 RENTDLREEIKVMERFR 1049
Cdd:pfam17380  559 RKATEERSRLEAMERER 575
FPP pfam05911
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ...
 905-973 6.51e-03

Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.


Pssm-ID: 461778 [Multi-domain]  Cd Length: 859  Bit Score: 40.81  E-value: 6.51e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 130980075   905 VLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEI----ADFEQQKakelARIEEFKKE------EMRKLQKE 973
Cdd:pfam05911   89 ELEAKLVETEQELLRAAAENDALSRSLQERENLLMKLSEEKsqaeAEIEALK----SRLESCEKEinslkyELHVLSKE 163
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
908-1049 7.08e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 40.28  E-value: 7.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130980075  908 EKIIELETEIEKFKAENASLAKLRiERESALEKLRKEIADFEQQKaKELARIEEFKKEEMRKLQKER-KVFEKYTTAART 986
Cdd:COG1340   140 EKIKELEKELEKAKKALEKNEKLK-ELRAELKELRKEAEEIHKKI-KELAEEAQELHEEMIELYKEAdELRKEADELHKE 217

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 130980075  987 FPDKKE-----REEIQTLKQQIADLREDLKRKETKwssTHSRLRSQIQMLVREntdLREEIkvMERFR 1049
Cdd:COG1340   218 IVEAQEkadelHEEIIELQKELRELRKELKKLRKK---QRALKREKEKEELEE---KAEEI--FEKLK 277
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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