|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
672-1385 |
1.02e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 1.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 672 LQAKLSSFEET-NKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQ 750
Cdd:TIGR02168 237 LREELEELQEElKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL----A 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 751 SLFSEVASLKEQMHKSRflSQVVEDSEptrnqNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK 830
Cdd:TIGR02168 313 NLERQLEELEAQLEELE--SKLDELAE-----ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 831 DQIAyVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDA--LRLREANEEIEKLKLEIEKLKAESGN-----P 903
Cdd:TIGR02168 386 SKVA-QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEELEEELEELQEELERleealE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 904 SIRQKIRLKDKAADAKK--IQDLERQVKEMEGIL--KRRYPNSLPALILAASAAGDTVD--KNTVEFMEKRIKKLEADLE 977
Cdd:TIGR02168 465 ELREELEEAEQALDAAEreLAQLQARLDSLERLQenLEGFSEGVKALLKNQSGLSGILGvlSELISVDEGYEAAIEAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 978 G--------KDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDS-PRIKALEKELDDIKEAHQITVRNLEAE 1048
Cdd:TIGR02168 545 GrlqavvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1049 IDVLKH-QNAELDVKKNDKD------DEDFQSIEFQVEQAHAKAKLVRLNeelaaKKREIQDLSKTVERLQ------KDR 1115
Cdd:TIGR02168 625 VLVVDDlDNALELAKKLRPGyrivtlDGDLVRPGGVITGGSAKTNSSILE-----RRREIEELEEKIEELEekiaelEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1116 RMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSK---LYQPHTFTDSHVSEVLQENYRLKNELEGLISEKNE 1192
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1193 LKMKSEAVMNQFENSMRRVKEDTAAhIASLKASHQREIEKLLcqnaveNSSSKVAELNRKIATQEVLIRHFQSQVNELQS 1272
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREA-LDELRAELTLLNEEAA------NLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1273 KQESLVVS----EVREEILQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEmrhaqreqelqqiiqqtHQVVETEQ 1348
Cdd:TIGR02168 853 DIESLAAEieelEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE-----------------SKRSELRR 915
|
730 740 750
....*....|....*....|....*....|....*..
gi 148612801 1349 NKEvEKWKRLAQLKNReLEKFRTELDSILDVLRELHR 1385
Cdd:TIGR02168 916 ELE-ELREKLAQLELR-LEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
789-1325 |
5.95e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 789 AELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEEThKQEISRLQKRLqwyAEN 868
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-EERLEELEEEL---AEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 869 QELLDKDALRLREANEEIEKLKLEIEKLKAESGNpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLPALIL 948
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAE---AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 949 AASAAGDtvdkntvefmEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPR-IKAL 1027
Cdd:COG1196 406 EEAEEAL----------LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEeAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1028 EKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKT 1107
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1108 VERLQKDRRmmLSNQNSKGREE----MSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNEL 1183
Cdd:COG1196 556 DEVAAAAIE--YLKAAKAGRATflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1184 EGL-ISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRH 1262
Cdd:COG1196 634 AALrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148612801 1263 FQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVgLEKKIKQMEMR 1325
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE-LERELERLERE 775
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
701-1116 |
9.20e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 9.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQ--QENERLYNQVKDLQEQNKKNEERMfKENQSLFSEVASLKEQMHKSRF-LSQVVEDSE 777
Cdd:COG4717 109 AELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERL-EELRELEEELEELEAELAELQEeLEELLEQLS 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 778 PTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQ------------------IAYVTGE 839
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallaLLGLGGS 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 840 KLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAK 919
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 920 KIQDLERQVKEMEgilkrrypnslpalilaasaagdtvDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKI 999
Cdd:COG4717 348 ELQELLREAEELE-------------------------EELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKE 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1000 QYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAhqitVRNLEAEIDVLKHQNAELDVKKND-KDDEDFQSIEFQV 1078
Cdd:COG4717 403 ELEELEEQLEELLGELEELLEALDEEELEEELEELEEE----LEELEEELEELREELAELEAELEQlEEDGELAELLQEL 478
|
410 420 430
....*....|....*....|....*....|....*...
gi 148612801 1079 EQAhaKAKLVRLNEELAAKKREIQDLSKTVERLQKDRR 1116
Cdd:COG4717 479 EEL--KAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
617-1116 |
1.22e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 617 KRVQEAEDKWRGAQALIEQIKATfSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLssfEETNKKQRwlhfgeaad 696
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAE-LEELEAELEELEAELAELEAELEELRLELEELELEL---EEAQAEEY--------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 697 pVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQSLFSEVASLKEQMHKSRFLSQVVEDS 776
Cdd:COG1196 292 -ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 777 EPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyvtgEKLYEIKILEETHKQEIS 856
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE----ELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 857 RLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGnpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILK 936
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA----EAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 937 RRYPNSLPALIL------------AASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAkkSLRTMEQQFQKMKIQYEQR 1004
Cdd:COG1196 519 LRGLAGAVAVLIgveaayeaaleaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL--PLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1005 LEQQEQLLACKLNQHDsprikALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAK 1084
Cdd:COG1196 597 IGAAVDLVASDLREAD-----ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510
....*....|....*....|....*....|..
gi 148612801 1085 AKLVRLNEELAAKKREIQDLSKTVERLQKDRR 1116
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEE 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
784-1125 |
5.56e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 5.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 784 FTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEkLYEikileetHKQEISRLQKRLQ 863
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE-LYA-------LANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 864 WYAENQELLDKDalrLREANEEIEKLKLEIEKLKAEsgnpsirqkirlkdKAADAKKIQDLERQVKEMEGILKRrypnsl 943
Cdd:TIGR02168 306 ILRERLANLERQ---LEELEAQLEELESKLDELAEE--------------LAELEEKLEELKEELESLEAELEE------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 944 palilaasaagdtvdkntvefmekrikkleadLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcklnqhdspR 1023
Cdd:TIGR02168 363 --------------------------------LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN---------E 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1024 IKALEKELDDIKEAHQITVRNLEAEIDVLkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQD 1103
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340
....*....|....*....|..
gi 148612801 1104 LSKTVERLQKDRRMMLSNQNSK 1125
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENL 501
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
788-1219 |
7.01e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 7.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 788 LAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIayvtgeKLYEIKILEETHKQEISRLQKRLQWYAE 867
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL------EKLEKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 868 NQELLDKDALRLREANEEIEKLKLEIEKLKAE----SGNPSIRQKIRLKDKAADAK------------------KIQDLE 925
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEEleelLEQLSLATEEELQDLAEELEelqqrlaeleeeleeaqeELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 926 RQVKEMEG----------ILKRRYPNSLPALILAASAAGDTVDKNTVEFMEK---RIKKLEADLEGKDEDAKKSLRTMEQ 992
Cdd:COG4717 227 EELEQLENeleaaaleerLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 993 QFQKMKIQYEQRLEQQEQLLACKLNQHDSP-RIKALEKELDDIKEAH-QITVRNLEAEIDVLKHQNAELDVKKNDKDDED 1070
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPeELLELLDRIEELQELLrEAEELEEELQLEELEQEIAALLAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1071 FQSIEFQVEQAHA-KAKLVRLNEELAAKKREIQDLSKTVERLQkdrrmmLSNQNSKGREEMSAKRAKKDVLHSSKGNANS 1149
Cdd:COG4717 387 LRAALEQAEEYQElKEELEELEEQLEELLGELEELLEALDEEE------LEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1150 FPGTLDsklyqphtfTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVmnqfENSMRRVKEDTAAHI 1219
Cdd:COG4717 461 ELEQLE---------EDGELAELLQELEELKAELRELAEEWAALKLALELL----EEAREEYREERLPPV 517
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
787-1058 |
7.55e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 7.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 787 LLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIayvtgeklyeikileETHKQEISRLQKRLQWYA 866
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---------------AALERRIAALARRIRALE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 867 EnqelldkdalRLREANEEIEKLKLEIEKLKaesgnpsirqkirlkdkaadaKKIQDLERQVKEMEGILKRRYPNSLPAL 946
Cdd:COG4942 76 Q----------ELAALEAELAELEKEIAELR---------------------AELEAQKEELAELLRALYRLGRQPPLAL 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 947 ILAASAAGDTVD-----KNTVEFMEKRIKKLEADLEGKD------EDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcK 1015
Cdd:COG4942 125 LLSPEDFLDAVRrlqylKYLAPARREQAEELRADLAELAalraelEAERAELEALLAELEEERAALEALKAERQKLLA-R 203
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 148612801 1016 LNQhdspRIKALEKELDDIKEAhqitVRNLEAEIDVLKHQNAE 1058
Cdd:COG4942 204 LEK----ELAELAAELAELQQE----AEELEALIARLEAEAAA 238
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
657-973 |
8.98e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 8.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 657 QQEKELFKLNQDNYILQAKLSS-FEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEqetLLQGYQQENERLYNQVKDLQ 735
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSlQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 736 --EQNKKNEERMFKENQSlfsEVASLKEQMHKSRFLSQVVEDSE-PTRNQNFTDLLAELRMAQKEKDSLLEDI----KRL 808
Cdd:TIGR02169 748 slEQEIENVKSELKELEA---RIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELSKLEEEVSRIEARLREIeqklNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 809 KQDKQALEVDFEKMKKERDQAKDQIAYVtGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRL----REANE 884
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSI-EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELeaqlRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 885 EIEKLKLEIEKLKAesgnpsirqkiRLKDKAAdakKIQDLERQVKEMEGILKRRYPNSLPALILaasaagDTVDKNtVEF 964
Cdd:TIGR02169 904 KIEELEAQIEKKRK-----------RLSELKA---KLEALEEELSEIEDPKGEDEEIPEEELSL------EDVQAE-LQR 962
|
....*....
gi 148612801 965 MEKRIKKLE 973
Cdd:TIGR02169 963 VEEEIRALE 971
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
634-1381 |
9.72e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.43 E-value: 9.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 634 EQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEETNKKqrwLHFGEAADPVTGEKLKQIQKEIQEQ 713
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH---LREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 714 ---ETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKE-------------------NQSLFSEVASLKEQMHKSRFLSQ 771
Cdd:TIGR00618 256 lkkQQLLKQLRARIEELRAQEAVLEETQERINRARKAAplaahikavtqieqqaqriHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 772 VVEDSEPTRNQNFTDLLAELRMAQK------------EKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE 839
Cdd:TIGR00618 336 QQSSIEEQRRLLQTLHSQEIHIRDAhevatsireiscQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 840 KLYEIKI---LEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAesgnpsiRQKIRLKDKAA 916
Cdd:TIGR00618 416 TSAFRDLqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT-------KEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 917 DAKKIQDLERQvKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK 996
Cdd:TIGR00618 489 KAVVLARLLEL-QEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 997 MkIQYEQRLEQQEQLLACKLNQhdsprikaLEKELDDIKEAHQitvRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIE- 1075
Cdd:TIGR00618 568 I-QQSFSILTQCDNRSKEDIPN--------LQNITVRLQDLTE---KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLq 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1076 -FQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRmmlsnqnskgreemsaKRAKKDVLHSSKGNANSFPGTL 1154
Cdd:TIGR00618 636 qCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS----------------RQLALQKMQSEKEQLTYWKEML 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1155 DSKLYQPHTftdshVSEVLQENYRLKNELE-GLISEKNELKMKSEAvMNQFENSMRRVKEDTAAHIASlkaSHQREIEKL 1233
Cdd:TIGR00618 700 AQCQTLLRE-----LETHIEEYDREFNEIEnASSSLGSDLAAREDA-LNQSLKELMHQARTVLKARTE---AHFNNNEEV 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1234 LcqnAVENSSSKVAELNRKIATQevlIRHFQSQVNELQSKQEslvvsEVREEILQKEITKLLEELREAKENhtpEMKHFV 1313
Cdd:TIGR00618 771 T---AALQTGAELSHLAAEIQFF---NRLREEDTHLLKTLEA-----EIGQEIPSDEDILNLQCETLVQEE---EQFLSR 836
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 148612801 1314 GLEKKIKQMEMRHAQREQELQQIIQQTHQVVETEQNKEVEKWKRLAQLKNR----ELEKFRTELDSILDVLR 1381
Cdd:TIGR00618 837 LEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQfdgdALIKFLHEITLYANVRL 908
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
604-1379 |
1.33e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 604 YCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEETN 683
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 684 KKQRwlhFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkenqslfsevaSLKEQM 763
Cdd:pfam02463 272 KENK---EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK--------------ELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 764 HKSRFLSQVVEDSEPTRNQNFT---DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEK 840
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEeeeELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 841 LYEIKILEETHKQEISRLqkrlqwyAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKirLKDKAADAKK 920
Cdd:pfam02463 415 RQLEDLLKEEKKEELEIL-------EEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK--ETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 921 IQDLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQfQKMKIQ 1000
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD-EVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1001 YEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQ 1080
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1081 AHAKAKLVRLNEELAAKKREIQDLSKT-----VERLQKDRRMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLD 1155
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELtkellEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1156 SKLyqphTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIEKLLC 1235
Cdd:pfam02463 725 DRV----QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1236 QNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVGL 1315
Cdd:pfam02463 801 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELE 880
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148612801 1316 EKKIKQMEMrHAQREQELQQIIQQTHQVVETEQNKEVEKWKRLAQLKNRELEKFRTELDSILDV 1379
Cdd:pfam02463 881 EQKLKDELE-SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLE 943
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
786-996 |
1.90e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 786 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEvdfekmkkERDQAKDQIAYVTGEklyEIKIleETHKQEISRLQKRLqwy 865
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQ--------ERREALQRLAEYSWD---EIDV--ASAEREIAELEAEL--- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 866 aenqELLDKDALRLREANEEIEKLKLEIEKLKaesgnpsiRQKIRLKDKAADA-KKIQDLERQVKEMEGILKRRYPNSLP 944
Cdd:COG4913 678 ----ERLDASSDDLAALEEQLEELEAELEELE--------EELDELKGEIGRLeKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 148612801 945 ALILA-----ASAAGDTVDKNTVEFMEKRIKKLEADLEGkdedAKKSLRTMEQQFQK 996
Cdd:COG4913 746 ELRALleerfAAALGDAVERELRENLEERIDALRARLNR----AEEELERAMRAFNR 798
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
679-1275 |
2.34e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.42 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 679 FEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKneerMFKENQSLFSEVAS 758
Cdd:pfam05483 84 YKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKD----LIKENNATRHLCNL 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 759 LKEQMHKSRFLSQVVEDSEPTRNQNFTDL--------LAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK 830
Cdd:pfam05483 160 LKETCARSAEKTKKYEYEREETRQVYMDLnnniekmiLAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKE 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 831 DQIAYV------TGEKLYEIKILEETHKQEISRLQKRLQWYAENqelldkdalrLREANEEIEKLKLEIEKLKAESGNPS 904
Cdd:pfam05483 240 KQVSLLliqiteKENKMKDLTFLLEESRDKANQLEEKTKLQDEN----------LKELIEKKDHLTKELEDIKMSLQRSM 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 905 IRQKIRLKDKAADAKKIQDL-ERQVKEMEGILKRRYPNSLPALILAASAAGDT----VDKNTVEFMEKRIKKLEADLEGK 979
Cdd:pfam05483 310 STQKALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEellrTEQQRLEKNEDQLKIITMELQKK 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 980 DEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLK----HQ 1055
Cdd:pfam05483 390 SSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeHY 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1056 NAELDVKKNDKDDEDFQSIEFQV--------------EQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQkDRRMMLSN 1121
Cdd:pfam05483 470 LKEVEDLKTELEKEKLKNIELTAhcdklllenkeltqEASDMTLELKKHQEDIINCKKQEERMLKQIENLE-EKEMNLRD 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1122 QNSKGREEMSAKRAK-KDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNeLEGLISEKNELKMKSEAV 1200
Cdd:pfam05483 549 ELESVREEFIQKGDEvKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN-IEELHQENKALKKKGSAE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1201 MNQFE------NSMRRVKEDTAAHIASLKASHQREIE--KLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQS 1272
Cdd:pfam05483 628 NKQLNayeikvNKLELELASAKQKFEEIIDNYQKEIEdkKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVA 707
|
...
gi 148612801 1273 KQE 1275
Cdd:pfam05483 708 LME 710
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
701-1383 |
2.39e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 780
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 781 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKlyEIKILE-ETHKQEISRLQ 859
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK--EDKALEiKKQEWKLEQLA 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 860 KRLQwyAENQELLDKDAlRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMeGILKRRY 939
Cdd:TIGR02169 462 ADLS--KYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL-GSVGERY 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 940 pnsLPALILAASA-------AGDTVDKNTVEFMEKR------------IKKLEADLEGKDEDAKK----SLRTMEQQFQK 996
Cdd:TIGR02169 538 ---ATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRkagratflplnkMRDERRDLSILSEDGVIgfavDLVEFDPKYEP 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 997 MKIQYEQRLEQQEQLLACKlNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDdedfqsiEF 1076
Cdd:TIGR02169 615 AFKYVFGDTLVVEDIEAAR-RLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLE-------GL 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1077 QVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMmLSNQNSKGREEMSAKRAKKDVLhsskgnansfpgtlds 1156
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ-LEQEEEKLKERLEELEEDLSSL---------------- 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1157 klyqphtftdshvSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVK-EDTAAHIASLKASHQReIEKLLc 1235
Cdd:TIGR02169 750 -------------EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSR-IEARL- 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1236 qnavenssskvAELNRKIATQEVLIRHFQSQVNELQSKQESLV--VSEVREEI--LQKEITKLLEELREAKENHTPEMKH 1311
Cdd:TIGR02169 815 -----------REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeqIKSIEKEIenLNGKKEELEEELEELEAALRDLESR 883
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148612801 1312 FVGLEKKIKQME--MRHAQREqelqqiiqqthqvvETEQNKEVEKWKRLAQLKNRELEKFRTELDSILDVLREL 1383
Cdd:TIGR02169 884 LGDLKKERDELEaqLRELERK--------------IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
701-911 |
4.89e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQN---------------------KKNEERMFKENQSLFSEVASL 759
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaalarriraleqelaaleaelAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 760 KEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE 839
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 148612801 840 KLyEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRL 911
Cdd:COG4942 187 RA-ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
696-1261 |
5.80e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 5.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 696 DPVTGEKLKQIQKEIQEqetlLQGYQQENERLYNQVKDLQEQNKKNEERmfkenQSLFSEVASLKEQMHKSRFLsqvved 775
Cdd:COG4913 220 EPDTFEAADALVEHFDD----LERAHEALEDAREQIELLEPIRELAERY-----AAARERLAELEYLRAALRLW------ 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 776 septRNQNFTDLLaelrmaQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEI 855
Cdd:COG4913 285 ----FAQRRLELL------EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 856 SRLQKRLQWYaenQELLDKDALRLREANEEIEKLKLEIEKLKAESGnpsiRQKIRLKDKAADAK-KIQDLERQVKEMEG- 933
Cdd:COG4913 355 EERERRRARL---EALLAALGLPLPASAEEFAALRAEAAALLEALE----EELEALEEALAEAEaALRDLRRELRELEAe 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 934 --ILKRRyPNSLPALILA-----ASAAGDTVDKNTV--EFMEkrIKKLEADLEG---------------KDEDAKKSLRT 989
Cdd:COG4913 428 iaSLERR-KSNIPARLLAlrdalAEALGLDEAELPFvgELIE--VRPEEERWRGaiervlggfaltllvPPEHYAAALRW 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 990 MEQQFQKMKIQYE---------QRLEQQEQLLACKLNQHDSP-------------------------------------- 1022
Cdd:COG4913 505 VNRLHLRGRLVYErvrtglpdpERPRLDPDSLAGKLDFKPHPfrawleaelgrrfdyvcvdspeelrrhpraitragqvk 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1023 --------------------------RIKALEKELDDIKEAH---QITVRNLEAEIDVL-KHQNAELDVKKNDKDDEDFQ 1072
Cdd:COG4913 585 gngtrhekddrrrirsryvlgfdnraKLAALEAELAELEEELaeaEERLEALEAELDALqERREALQRLAEYSWDEIDVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1073 SIEFQVEQAHAK--------AKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREEmsakRAKKDVLHSSK 1144
Cdd:COG4913 665 SAEREIAELEAElerldassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL----DELQDRLEAAE 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1145 GNANSFPGT-LDSKLYQPHtfTDSHVSEVLQenyRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIAS-- 1221
Cdd:COG4913 741 DLARLELRAlLEERFAAAL--GDAVERELRE---NLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESlp 815
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 148612801 1222 --------LKAS----HQREIEKLLcqnaVENSSSKVAELNRKIATQEVLIR 1261
Cdd:COG4913 816 eylalldrLEEDglpeYEERFKELL----NENSIEFVADLLSKLRRAIREIK 863
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
653-1306 |
7.13e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 7.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 653 ELKKQQEK-ELFKlnqdnyilqaKLSSFEETNKKQRWLHfgeaadpvtgeKLKQIQKEIQEQETLLQGYQQENERLYNQV 731
Cdd:COG1196 204 PLERQAEKaERYR----------ELKEELKELEAELLLL-----------KLRELEAELEELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 732 KDLQEQNKKNEERMFKENQSLfsevaslkeqmhksrflsqvvedseptrnqnfTDLLAELRMAQKEKDSLLEDIKRLKQD 811
Cdd:COG1196 263 AELEAELEELRLELEELELEL--------------------------------EEAQAEEYELLAELARLEQDIARLEER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 812 KQALEVDFEKMKKERDQAKDQIAyvtgeklyEIKILEETHKQEISRLQKRLqwyAENQELLDKDALRLREANEEIEKLKL 891
Cdd:COG1196 311 RRELEERLEELEEELAELEEELE--------ELEEELEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 892 EIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTvefMEKRIKK 971
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE---EEAELEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 972 LEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSP---RIKALEKELDDIKEAHQITVRNLEAE 1048
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLegvKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1049 IDVLKHQNAELDVKKNDKDDEDFQS-IEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGR 1127
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAaIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1128 EEMSAKRAKKDVLHsSKGNANSFPGTLDSKLYQphTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENS 1207
Cdd:COG1196 617 VLGDTLLGRTLVAA-RLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1208 MRRvkEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVnELQSKQESLVVSEVREEI- 1286
Cdd:COG1196 694 ELE--EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE-ALEELPEPPDLEELERELe 770
|
650 660
....*....|....*....|....*...
gi 148612801 1287 -LQKEITKL-------LEELREAKENHT 1306
Cdd:COG1196 771 rLEREIEALgpvnllaIEEYEELEERYD 798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
611-1118 |
7.31e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 7.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 611 KKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELEN------KLEELKKQQEKELFKLNQDNYILQAKLSSFEETNK 684
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleaeleELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 685 KQRwlhfGEAADpvTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQmh 764
Cdd:COG1196 306 RLE----ERRRE--LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-- 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 765 KSRFLSQVVEDSEPTRNQNftDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyvtgEKLYEI 844
Cdd:COG1196 378 EEELEELAEELLEALRAAA--ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE----EAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 845 KILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIE----------KLKAESGNPSI--------- 905
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAdyegflegvkAALLLAGLRGLagavavlig 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 906 ----------------RQKIRLKDKAADAKKIQDLERQVKEMEGIL-----KRRYPNSLPALILAASAA----------- 953
Cdd:COG1196 532 veaayeaaleaalaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiRARAALAAALARGAIGAAvdlvasdlrea 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 954 ------------GDTVDKNTVEFMEKRIKKLEADL-EGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKlnqhd 1020
Cdd:COG1196 612 daryyvlgdtllGRTLVAARLEAALRRAVTLAGRLrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE----- 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1021 spRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAkkrE 1100
Cdd:COG1196 687 --RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP---D 761
|
570
....*....|....*...
gi 148612801 1101 IQDLSKTVERLQKDRRMM 1118
Cdd:COG1196 762 LEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
786-1043 |
8.22e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 8.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 786 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQKRLQWY 865
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 866 AENQELLDKdalRLREANEEIEKLKLEIEKLKAESGNPSIRqKIRLKDKAADAKKIQDLERQ------------------ 927
Cdd:TIGR02169 314 ERELEDAEE---RLAKLEAEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELEDLRAeleevdkefaetrdelkd 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 928 -VKEMEGILKRRYP---NSLPALILAASAAGDTVD-KNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEqQFQKMKIQYE 1002
Cdd:TIGR02169 390 yREKLEKLKREINElkrELDRLQEELQRLSEELADlNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE-QLAADLSKYE 468
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 148612801 1003 QRLEQQEQllacKLNQHDSpRIKALEKELdDIKEAHQITVR 1043
Cdd:TIGR02169 469 QELYDLKE----EYDRVEK-ELSKLQREL-AEAEAQARASE 503
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
668-894 |
8.69e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 8.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 668 DNYILQAKLSSFEETNKKQRWLhfgeaadpvtGEKLKQIQKEIQEQETLLQGYQQENerlynQVKDLQEQNKKNEERMFK 747
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFL----------EEQLPELRKELEEAEAALEEFRQKN-----GLVDLSEEAKLLLQQLSE 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 748 ENQSLFSEVASLKEQMHKSRFLSQVVEDSEPT-----RNQNFTDLLAELRMAQKEKDSLLE-------DIKRLKQDKQAL 815
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRAQLGSGPDAlpellQSPVIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 148612801 816 EvdfEKMKKERDQAKDQIayvtgeklyeikileethKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIE 894
Cdd:COG3206 304 R---AQLQQEAQRILASL------------------EAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
782-1385 |
8.82e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 8.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 782 QNFTDLLAELRmaQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyVTGEKLYEIKILEETHKQEISRLQKR 861
Cdd:TIGR02168 213 ERYKELKAELR--ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQ-ELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 862 LQwyaenqelldkdalrlrEANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILkrrypn 941
Cdd:TIGR02168 290 LY-----------------ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL------ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 942 slpalilaasaagdTVDKNTVEFMEKRIKKLEADLEgkdeDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAcklnqhds 1021
Cdd:TIGR02168 347 --------------EELKEELESLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNN-------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1022 pRIKALEKELDDIKEAHQITVRNLEAEIDVLkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREI 1101
Cdd:TIGR02168 401 -EIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1102 QDLSKTVERLQKDRRMMLSNQNskgrEEMSAKRAKKDVLHsskgNANSFPGTLD--SKLYQ------------------- 1160
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLK----NQSGLSGILGvlSELISvdegyeaaieaalggrlqa 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1161 -----------------PHTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKE---------- 1213
Cdd:TIGR02168 550 vvvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvd 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1214 --DTAAHIASLKASHQREIEK---------------LLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQES 1276
Cdd:TIGR02168 630 dlDNALELAKKLRPGYRIVTLdgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1277 lvvsevreeiLQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEMRHAQREQEL---QQIIQQTHQVVETEQNKEVE 1353
Cdd:TIGR02168 710 ----------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELtelEAEIEELEERLEEAEEELAE 779
|
650 660 670
....*....|....*....|....*....|....*...
gi 148612801 1354 KWKRLAQLK------NRELEKFRTELDSILDVLRELHR 1385
Cdd:TIGR02168 780 AEAEIEELEaqieqlKEELKALREALDELRAELTLLNE 817
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
876-1113 |
1.01e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 876 ALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRrypnslpalilaasaagd 955
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA------------------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 956 tvdkntvefMEKRIKKLEADLegkdEDAKKSLRTMEQQFQKMkIQYEQRLEQQEQLLAcKLNQHDSPRIKALEKELDDIK 1035
Cdd:COG4942 81 ---------LEAELAELEKEI----AELRAELEAQKEELAEL-LRALYRLGRQPPLAL-LLSPEDFLDAVRRLQYLKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1036 EAHQITVRNLEAEIDVLKHQNAELDVKKNDK----DDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERL 1111
Cdd:COG4942 146 PARREQAEELRADLAELAALRAELEAERAELeallAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
..
gi 148612801 1112 QK 1113
Cdd:COG4942 226 EA 227
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
725-1116 |
2.27e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 725 ERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEptrnqnftdllAELRMAQKEKDSLLED 804
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELE-----------EELEELEAELEELREE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 805 IKRLKQDKQALEVDFEKMKKER---------DQAKDQIAYVTgEKLYEIKILEETH---KQEISRLQKRLQWYAENQelL 872
Cdd:COG4717 118 LEKLEKLLQLLPLYQELEALEAelaelperlEELEERLEELR-ELEEELEELEAELaelQEELEELLEQLSLATEEE--L 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 873 DKDALRLREANEEIEKLKLEIEKLKAESGNpsIRQKIrlkDKAADAKKIQDLERQVKEMEGILKrrypnsLPALILAASA 952
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEE--LEEEL---EQLENELEAAALEERLKEARLLLL------IAAALLALLG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 953 AGDTVDKNTVEFMEK---RIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSP-RIKALE 1028
Cdd:COG4717 264 LGGSLLSLILTIAGVlflVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPeELLELL 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1029 KELDDIKEAH-QITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHA------------------------ 1083
Cdd:COG4717 344 DRIEELQELLrEAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQElkeeleeleeqleellgeleelle 423
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 148612801 1084 --------------KAKLVRLNEELAAKKREIQDLSKTVERLQKDRR 1116
Cdd:COG4717 424 aldeeeleeeleelEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
701-1303 |
4.05e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQQENErlynQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKsrfLSQVVEDSEPTR 780
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEKELEEVLREINEISSELPELREELEK---LEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 781 NqnftdllaELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVT-----GEKLYEIKILEETHKQEI 855
Cdd:PRK03918 238 E--------EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelkekAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 856 SRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKaesgnpsiRQKIRLKDkaaDAKKIQDLERQVKEMEGIL 935
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE--------KRLEELEE---RHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 936 KRRYPNS---LPALILAASAAgdtvdKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK-----MKIQYEQRLEQ 1007
Cdd:PRK03918 379 KRLTGLTpekLEKELEELEKA-----KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHRKEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1008 QEQLLAcklnqhDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSiEFQVEQAHAKAKL 1087
Cdd:PRK03918 454 LEEYTA------ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLK-KYNLEELEKKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1088 VR-LNEELAAKKREIQDLSKTVERLQ--KDRRMMLSNQNSKGREEmsakraKKDVLHSSKGNANSFPGTLDSKLYQPHTF 1164
Cdd:PRK03918 527 YEkLKEKLIKLKGEIKSLKKELEKLEelKKKLAELEKKLDELEEE------LAELLKELEELGFESVEELEERLKELEPF 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1165 TDSHVsEVLQENYRLKNELEGLISEKNELKmKSEAVMNQFENSMRRVKEDTaahiaslkashqREIEKLLCQNAVENSSS 1244
Cdd:PRK03918 601 YNEYL-ELKDAEKELEREEKELKKLEEELD-KAFEELAETEKRLEELRKEL------------EELEKKYSEEEYEELRE 666
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 148612801 1245 KVAELNRKIATQEvlirhfqSQVNELQSKQESLvvsevreeilQKEITKLLEELREAKE 1303
Cdd:PRK03918 667 EYLELSRELAGLR-------AELEELEKRREEI----------KKTLEKLKEELEEREK 708
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
723-1366 |
6.52e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 6.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 723 ENERLYNQVKDLQEQNKKNEERMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNftdllaELRMAQKEKDSll 802
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD------ELKKAEEKKKA-- 1292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 803 EDIKRLKQDKQAlevdfEKMKKERDQAKDqiAYVTGEKLYEIKILEETHKQEISRLQKRLQwYAENQELLDKDALRLREA 882
Cdd:PTZ00121 1293 DEAKKAEEKKKA-----DEAKKKAEEAKK--ADEAKKKAEEAKKKADAAKKKAEEAKKAAE-AAKAEAEAAADEAEAAEE 1364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 883 NEEIEKLKLEIEKLKAEsgnpSIRQKIRLKDKAADAKKiqDLERQVKEMEGILKRRypnslpalilAASAAGDTVDKNTV 962
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKAD----AAKKKAEEKKKADEAKK--KAEEDKKKADELKKAA----------AAKKKADEAKKKAE 1428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 963 EFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALE--KELDDIKEAHQI 1040
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEakKKADEAKKAAEA 1508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1041 TVRNLEAEIDVLKHQNAELdvkknDKDDEDFQSIEFQVEQAHAKAKLVRLNEELaaKKREIQDLSKTVERLQKDRRMMLS 1120
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEA-----KKAEEAKKADEAKKAEEKKKADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALR 1581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1121 N-QNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYqphtftdshvSEVLQENYRLKNELEGLISEKNELKMKSEA 1199
Cdd:PTZ00121 1582 KaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK----------AEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1200 VmnqfensmRRVKEDTAAHIASLKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVV 1279
Cdd:PTZ00121 1652 L--------KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1280 SEVREEILQKEITKLLEELREAKEnhtpEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQthqVVETEQNKEVEKWKRLA 1359
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAE----EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA---VIEEELDEEDEKRRMEV 1796
|
....*..
gi 148612801 1360 QLKNREL 1366
Cdd:PTZ00121 1797 DKKIKDI 1803
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
701-910 |
1.12e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 780
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-LEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 781 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYV----TGEKLYEIKILEETHKQEIS 856
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkySEEEYEELREEYLELSRELA 676
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 148612801 857 RLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKL-KAESGNPSIRQKIR 910
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLeKALERVEELREKVK 731
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
789-1367 |
1.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 789 AELRMAQKEKDSLLEDIKRLKQDKQALEVdfeKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRlqkRLQWYAEN 868
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEARKAEDA---RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK---KAEAARKA 1184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 869 QELLDKDALRLREANEEIEKL-KLEIEKLKAESGNPSIRQKIRLKDKAADAKK-IQDLERQVKEMEGILKRRYPNSLPAL 946
Cdd:PTZ00121 1185 EEVRKAEELRKAEDARKAEAArKAEEERKAEEARKAEDAKKAEAVKKAEEAKKdAEEAKKAEEERNNEEIRKFEEARMAH 1264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 947 ILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSlrtmeqqfQKMKIQYEQRLEQQEqllACKLNQHDSPRIKA 1026
Cdd:PTZ00121 1265 FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA--------DEAKKKAEEAKKADE---AKKKAEEAKKKADA 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1027 LEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEdfqsiEFQVEQAHAKAKLVRLNEELAAKKREIQDLSK 1106
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA-----KKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1107 TVERLQKDRRMMlSNQNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKlyqphtftdshvSEVLQENYRLKNELEGL 1186
Cdd:PTZ00121 1409 ELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK------------AEEAKKKAEEAKKADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1187 iSEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKASHQREIE-KLLCQNAVENSSSKVAELNRKiaTQEVLIRHFQS 1265
Cdd:PTZ00121 1476 -KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEeAKKADEAKKAEEAKKADEAKK--AEEKKKADELK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1266 QVNELQSKQESLVVSEVREEILQKEIT-KLLEELREAKENHTPEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQTHQV- 1343
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMAlRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEk 1632
|
570 580
....*....|....*....|....*.
gi 148612801 1344 --VETEQNKEVEKWKRLAQLKNRELE 1367
Cdd:PTZ00121 1633 kkVEQLKKKEAEEKKKAEELKKAEEE 1658
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
919-1233 |
1.60e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 919 KKIQDLERQVKEMEgilkrrypnslpALILAASAAGDTVDK--NTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQQFQK 996
Cdd:TIGR02168 677 REIEELEEKIEELE------------EKIAELEKALAELRKelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 997 MKIQYEQ------RLEQQEQLLACKLNQHDSP------RIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKN 1064
Cdd:TIGR02168 745 LEERIAQlskeltELEAEIEELEERLEEAEEElaeaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1065 DKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRmMLSNQNSKGREEMSAKRAKKDVLHSSK 1144
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-ALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1145 GNANSFPGTLDSKLyqpHTFTDSHVSEVLQENyRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKa 1224
Cdd:TIGR02168 904 RELESKRSELRREL---EELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE- 978
|
....*....
gi 148612801 1225 shqREIEKL 1233
Cdd:TIGR02168 979 ---NKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
656-937 |
1.68e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 656 KQQEKELFKLNQDNYILQaklssfEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQ 735
Cdd:TIGR02168 694 AELEKALAELRKELEELE------EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 736 EQNKKNEE---RMFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDK 812
Cdd:TIGR02168 768 ERLEEAEEelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 813 QALEVDFEKMKKERDQAKDQIAYVTgEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLR----EANEEIEK 888
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELE-SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleELREKLAQ 926
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 148612801 889 LKLEIEKLKAESGNpsIRQKIR----------LKDKAADAKKIQDLERQVKEMEGILKR 937
Cdd:TIGR02168 927 LELRLEGLEVRIDN--LQERLSeeysltleeaEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
797-1067 |
1.81e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 797 EKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK--DQIAyVTGEKLYEIKILEETHKQEISRLQ--KRLQWYAENQELL 872
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIEllEPIR-ELAERYAAARERLAELEYLRAALRlwFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 873 DKDALRLREANEEIEKLKLEIEKLKAEsgnpsiRQKIRLKDKAADAKKIQDLERQVKEMEGILKRRYPNSLpALILAASA 952
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREE------LDELEAQIRGNGGDRLEQLEREIERLERELEERERRRA-RLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 953 AGDTVDKNTVEF--MEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLlacKLNQHDSPRikALEKE 1030
Cdd:COG4913 371 LGLPLPASAEEFaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL---ERRKSNIPA--RLLAL 445
|
250 260 270
....*....|....*....|....*....|....*...
gi 148612801 1031 LDDIKEAHQITvrnlEAEIDVLkhqnAEL-DVKKNDKD 1067
Cdd:COG4913 446 RDALAEALGLD----EAELPFV----GELiEVRPEEER 475
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
739-1367 |
2.66e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 739 KKNEERMFKENQSLFSEvASLKEQMHKSRFLSQVVED-SEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEV 817
Cdd:TIGR00606 451 KKQEELKFVIKELQQLE-GSSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 818 DFEKMKKERDQAKDQIayvtgEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANEEIEKLKLEIEKLK 897
Cdd:TIGR00606 530 HTTTRTQMEMLTKDKM-----DKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLE 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 898 AESGN------PSIRQKIRLKDKAADAKKIQ----DLERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEK 967
Cdd:TIGR00606 605 QNKNHinneleSKEEQLSSYEDKLFDVCGSQdeesDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQ 684
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 968 RIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLAckLNQHDSPRIKALEKELDDIKEAHQITVRNLEA 1047
Cdd:TIGR00606 685 RVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG--LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR 762
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1048 EIDVLKHQNAELD-VKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQK---DRRMMLSNQN 1123
Cdd:TIGR00606 763 LKNDIEEQETLLGtIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQekqEKQHELDTVV 842
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1124 SKGREEMSAKRAKKDVLHSSKGNANSFPG---TLDSKLYQPHTFTD------SHVSEVLQENYRLKNELEGLISEKNELK 1194
Cdd:TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSeklQIGTNLQRRQQFEEqlvelsTEVQSLIREIKDAKEQDSPLETFLEKDQ 922
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1195 MKSEAVMNQFENSMRRVKEDTAAHIASLKASH--QREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQS 1272
Cdd:TIGR00606 923 QEKEELISSKETSNKKAQDKVNDIKEKVKNIHgyMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRL 1002
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1273 KQESLVVSEVREEILQKEIT--KLLEELREAKEnhtpEMKHFVGLEKKIKQMEMRHAQREQELQQIIQQTHQVVETEQNK 1350
Cdd:TIGR00606 1003 MRQDIDTQKIQERWLQDNLTlrKRENELKEVEE----ELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQK 1078
|
650
....*....|....*..
gi 148612801 1351 EVEKWKRLAQLKNRELE 1367
Cdd:TIGR00606 1079 GYEKEIKHFKKELREPQ 1095
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
695-904 |
3.33e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 695 ADP---VTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERM-------------FKENQSLFSEVA- 757
Cdd:COG3883 14 ADPqiqAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdklqaeiaeaeaeIEERREELGERAr 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 758 SLKEQMHKSRFLSQVVEdseptrNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVt 837
Cdd:COG3883 94 ALYRSGGSVSYLDVLLG------SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL- 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148612801 838 geklyeikileETHKQEISRLQkrlqwyAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNPS 904
Cdd:COG3883 167 -----------EAAKAELEAQQ------AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
701-862 |
3.67e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkenqslfsEVASLKEQMHKSRFLSQVVEDseptr 780
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL-----------EIEEVEARIKKYEEQLGNVRN----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 781 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGE---KLYEIKILEETHKQEISR 857
Cdd:COG1579 88 NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEldeELAELEAELEELEAEREE 167
|
....*
gi 148612801 858 LQKRL 862
Cdd:COG1579 168 LAAKI 172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
695-889 |
3.69e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 695 ADPVTG----EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQnkKNEERMFKENQSLFSEVASLKEQMH-KSRFL 769
Cdd:COG4913 600 SRYVLGfdnrAKLAALEAELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSWDEIDVASAEREIAeLEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 770 SQVVEDseptrNQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQI-AYVTGEKLYEIKILE 848
Cdd:COG4913 678 ERLDAS-----SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLE 752
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 148612801 849 ETHKQEI-SRLQKRL-QWYAENQELLDKdalRLREANEEIEKL 889
Cdd:COG4913 753 ERFAAALgDAVERELrENLEERIDALRA---RLNRAEEELERA 792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
795-1382 |
3.83e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 795 QKEKDSLLE-DIKRLKQDKQALEVDfeKMKKERDQAKDQIAYVTGEKLYEIKILEETH--KQEISRLQKRLQWYAENQEL 871
Cdd:PRK03918 134 QGEIDAILEsDESREKVVRQILGLD--DYENAYKNLGEVIKEIKRRIERLEKFIKRTEniEELIKEKEKELEEVLREINE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 872 LDKDALRLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGIL-----KRRYPNSLPAL 946
Cdd:PRK03918 212 ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeleeKVKELKELKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 947 ILAASAAGDTVDKNTVEfmEKRIKKLEADLEGKDEDAKKSLRTMEQQfqkmkiqyEQRLEQQEQllacklnqhdspRIKA 1026
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDE--LREIEKRLSRLEEEINGIEERIKELEEK--------EERLEELKK------------KLKE 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1027 LEKELDDIKEAHQI--TVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQahakaKLVRLNEELAAKKREIQDL 1104
Cdd:PRK03918 350 LEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE-----EISKITARIGELKKEIKEL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1105 SKTVERLQKDRRM------MLSNQNSKG-----REEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHvsEVL 1173
Cdd:PRK03918 425 KKAIEELKKAKGKcpvcgrELTEEHRKElleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELA 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1174 QENYRLKNELEGL----ISEKNELKMKSEAVMNQFENSMRRVKEDtaahiasLKASHQREIEKLLCQNAVENSSSKVAEL 1249
Cdd:PRK03918 503 EQLKELEEKLKKYnleeLEKKAEEYEKLKEKLIKLKGEIKSLKKE-------LEKLEELKKKLAELEKKLDELEEELAEL 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1250 NRKIATQEV-LIRHFQSQVNELQS---KQESLVVSEVREEILQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQMEMR 1325
Cdd:PRK03918 576 LKELEELGFeSVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 148612801 1326 HAQREQelqqiiqqthqvvETEQNKEVEKWKRLAQLKNR--ELEKFRTELDSILDVLRE 1382
Cdd:PRK03918 656 YSEEEY-------------EELREEYLELSRELAGLRAEleELEKRREEIKKTLEKLKE 701
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
738-1079 |
1.31e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 43.30 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 738 NKKNEERMFKENQSLFSEVASLKEQMHKSR---------FLSQVVEDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRL 808
Cdd:PLN03229 420 NMKKREAVKTPVRELEGEVEKLKEQILKAKessskpselALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 809 KQDK---QALEVDFEKMKKERDQAKDQIAYVTGEKlYEIKILEETHKqeisrlqkrlqwyaenqelldkdALRLREANEE 885
Cdd:PLN03229 500 SQDQlmhPVLMEKIEKLKDEFNKRLSRAPNYLSLK-YKLDMLNEFSR-----------------------AKALSEKKSK 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 886 IEKLKLEI-EKLKAESGNPSIRQKIR-LKDKAADAK--KIQDL--------ERQVKEMEGILKRRYPNSLPALILAASAA 953
Cdd:PLN03229 556 AEKLKAEInKKFKEVMDRPEIKEKMEaLKAEVASSGasSGDELdddlkekvEKMKKEIELELAGVLKSMGLEVIGVTKKN 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 954 GDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSlRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELD- 1032
Cdd:PLN03229 636 KDTAEQTPPPNLQEKIESLNEEINKKIERVIRS-SDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNs 714
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 148612801 1033 -DIKEAHQitvrNLEAEIDVLKHQNAELD--VKKNDKDDEDFQSIEFQVE 1079
Cdd:PLN03229 715 sELKEKFE----ELEAELAAARETAAESNgsLKNDDDKEEDSKEDGSRVE 760
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
596-1213 |
1.37e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 596 QFQTDSLGYCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKekelenkleelkkqqEKELFKLNQDNYILQAK 675
Cdd:PRK03918 134 QGEIDAILESDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERL---------------EKFIKRTENIEELIKEK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 676 LSSFEETNKKQRWLhfgEAADPVTGEKLKQIQKEIQEQETL---LQGYQQENERLYNQVKDLQEQNKKNEERmfkenqsl 752
Cdd:PRK03918 199 EKELEEVLREINEI---SSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEKIRELEER-------- 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 753 fsevasLKEQMHKSRFLSQVVEDSEptrnqnftdllaELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQ 832
Cdd:PRK03918 268 ------IEELKKEIEELEEKVKELK------------ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 833 IAYVTG--EKLYEIKILEETHKQEISRLQKRLQWYAENQELLD-KDALRLREANEEIEKLKLEIEKLkaESGNPSIRQKI 909
Cdd:PRK03918 330 IKELEEkeERLEELKKKLKELEKRLEELEERHELYEEAKAKKEeLERLKKRLTGLTPEKLEKELEEL--EKAKEEIEEEI 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 910 R-LKDKAADAK-KIQDLERQVKEMEGIlKRRYPnsLPALILAASAAGDTVDKNTVEFmeKRIKKLEADLEGKDEDAKKSL 987
Cdd:PRK03918 408 SkITARIGELKkEIKELKKAIEELKKA-KGKCP--VCGRELTEEHRKELLEEYTAEL--KRIEKELKEIEEKERKLRKEL 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 988 RTMEQQFQKMK--IQYEQRLEQQEQLLAcKLNQHDSPRIKALEKELDDIKEahqiTVRNLEAEIDVLKHQNAELDVKKND 1065
Cdd:PRK03918 483 RELEKVLKKESelIKLKELAEQLKELEE-KLKKYNLEELEKKAEEYEKLKE----KLIKLKGEIKSLKKELEKLEELKKK 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1066 KddedfqsIEFQVEQAHAKAKLVRLNEELAAKKRE-IQDLSKTVERLQKDRRMMLSNQNSKGREEMSAKRAKK------- 1137
Cdd:PRK03918 558 L-------AELEKKLDELEEELAELLKELEELGFEsVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKleeeldk 630
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 148612801 1138 --DVLHSSKGNANSFPGTLDSKLYQphtFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKE 1213
Cdd:PRK03918 631 afEELAETEKRLEELRKELEELEKK---YSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
633-1298 |
1.37e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 633 IEQIKATFSEKEKELENKLEELKKQQEKELFKLNQDNYILQAKLSSFEET-------------------NKKQRWLHFGE 693
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMErdamadirrresqsqedlrNQLQNTVHELE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 694 AADPVTGEKLK-------QIQKEIQEQETLLQG----------------YQQEN-------------------------- 724
Cdd:pfam15921 156 AAKCLKEDMLEdsntqieQLRKMMLSHEGVLQEirsilvdfeeasgkkiYEHDSmstmhfrslgsaiskilreldteisy 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 725 --ERLY---NQVKDLQEQNKKNEERMFKENQSLFS--------EVASLKEQMHKSR-----FLSQVVEDSEPTRNQN--F 784
Cdd:pfam15921 236 lkGRIFpveDQLEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARsqansIQSQLEIIQEQARNQNsmY 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 785 TDLLAELRMAQKEKDSLLEDIKRLKQDK-QALEVDFEKMKKERDQA---KDQIAYVTGEKLYEI-KILEETHKQE----I 855
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEArteRDQFSQESGNLDDQLqKLLADLHKREkelsL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 856 SRLQKRLQWYAENQELLDKDALR--LREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEG 933
Cdd:pfam15921 396 EKEQNKRLWDRDTGNSITIDHLRreLDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 934 ILkRRYPNSLpalilaasaagdTVDKNTVEFMEKRIKKLEADLEGKDedakKSLRTMEQQFQKMKIQYEQRLEQqeqlla 1013
Cdd:pfam15921 476 ML-RKVVEEL------------TAKKMTLESSERTVSDLTASLQEKE----RAIEATNAEITKLRSRVDLKLQE------ 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1014 cklnqhdsprIKALEKELDDIkeahqitvRNLEAEIDVLKHQNAELDvkkndkddedfQSIEFQVEQAHAKAKLVRLNEE 1093
Cdd:pfam15921 533 ----------LQHLKNEGDHL--------RNVQTECEALKLQMAEKD-----------KVIEILRQQIENMTQLVGQHGR 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1094 LAAKkreIQDLSKTVERLQKDRRMMLsnqnskgrEEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVL 1173
Cdd:pfam15921 584 TAGA---MQVEKAQLEKEINDRRLEL--------QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1174 QENYRLKNELEGLISEKNELKMKSEAVMNQFENSMRRVKEDTAAHIASLKaSHQREIEK----LLCQNAVENSSSKVAEL 1249
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLK-SAQSELEQtrntLKSMEGSDGHAMKVAMG 731
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 148612801 1250 NRKIATQEvlirhfQSQVNELQSK----QESLVVSEVREEILQKEITKLLEEL 1298
Cdd:pfam15921 732 MQKQITAK------RGQIDALQSKiqflEEAMTNANKEKHFLKEEKNKLSQEL 778
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
701-1149 |
1.39e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 780
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 781 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDqiayvtgeklyeikILEETHKQEISrlqk 860
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA--------------LLEAGKCPECG---- 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 861 rlqwyaenQELLDK-DALRLREANEEIEKLKLEIEKLKAESGnpSIRQKI-RLKDKAADAKKIQDLERQVKEMEGILKRR 938
Cdd:PRK02224 459 --------QPVEGSpHVETIEEDRERVEELEAELEDLEEEVE--EVEERLeRAEDLVEAEDRIERLEERREDLEELIAER 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 939 ypnslpalilaasAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKkslrtmeqqfqkmkiqyEQRLEQQEQLlacklnq 1018
Cdd:PRK02224 529 -------------RETIEEKRERAEELRERAAELEAEAEEKREAAA-----------------EAEEEAEEAR------- 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1019 hdsPRIKALEKELDDIKEAHQI--TVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSiefqveqahakaklvrlNEELAA 1096
Cdd:PRK02224 572 ---EEVAELNSKLAELKERIESleRIRTLLAAIADAEDEIERLREKREALAELNDER-----------------RERLAE 631
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 148612801 1097 KKREIQDLSKT-----VERLQKDRRMMLSNQnSKGREEMSAKRAKKDVLHSSKGNANS 1149
Cdd:PRK02224 632 KRERKRELEAEfdearIEEAREDKERAEEYL-EQVEEKLDELREERDDLQAEIGAVEN 688
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
598-1075 |
1.56e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 598 QTDSLGYCGENKEKKLLMFKRVQEAEDKWRGAQALIEQIKATFSEKEKELENKLEELKKQQEK-ELFKLNQDNYILQA-K 675
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKaEAAEKKKEEAKKKAdA 1382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 676 LSSFEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQgyQQENERLYNQVKDLQEQNKKNEERMFKENQSLFSE 755
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK--KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 756 VASLK-EQMHKSRFLSQVVE-----DSEPTRNQNFTDLLAELRMAQKEKDSlLEDIKRLKQDKQALEVDFEKMKKERDQA 829
Cdd:PTZ00121 1461 EAKKKaEEAKKADEAKKKAEeakkaDEAKKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 830 KDQiayVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDKDALRLREANE----EIEKLKLEIEKLKAESGNPSI 905
Cdd:PTZ00121 1540 KKA---EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKMKAEEAKKAE 1616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 906 RQKIR---LKDKAADAKKIQDL----ERQVKEMEGILKRRYPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEG 978
Cdd:PTZ00121 1617 EAKIKaeeLKKAEEEKKKVEQLkkkeAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 979 KDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLL----ACKLNQHDSPRIKALEKELDDIKEAHQITVRNLEAEIDVLKH 1054
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIkaeeAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
490 500
....*....|....*....|.
gi 148612801 1055 QNAELDVKKNDKDDEDFQSIE 1075
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMEVD 1797
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
672-1261 |
1.84e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 672 LQAKLSSFEETNKKQRWLHFGEAADPVTGEKLKQIQKEIQEQETLLQGYQqenerlyNQVKDLQEQNKKNEERMFK--EN 749
Cdd:TIGR00606 562 LTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN-------NELESKEEQLSSYEDKLFDvcGS 634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 750 QSLFSEVASLKEQMHKSRFLSQVVEDSEPTRNQNFTDLLAE--------LRMAQKEKD-----SLLEDIKRLKQDKQ-AL 815
Cdd:TIGR00606 635 QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEnqsccpvcQRVFQTEAElqefiSDLQSKLRLAPDKLkST 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 816 EVDFEKMKKERDqakdqiayvtgeklyEIKILEETHKQEISRLQKRLQWYAEnqelldkdalRLREANEEIEKLKLEIEK 895
Cdd:TIGR00606 715 ESELKKKEKRRD---------------EMLGLAPGRQSIIDLKEKEIPELRN----------KLQKVNRDIQRLKNDIEE 769
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 896 LKAESGNPSIRQKIRlKDKAADAKKIQDLERQVKEMEgilkRRYPNslpaliLAASAAGDTVDKNTVEFMEKRikklead 975
Cdd:TIGR00606 770 QETLLGTIMPEEESA-KVCLTDVTIMERFQMELKDVE----RKIAQ------QAAKLQGSDLDRTVQQVNQEK------- 831
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 976 legkdEDAKKSLRTMEQQFQKMKIQYEQRlEQQEQLLACKLNQHDSPRIK-----ALEKELDDIKEAHQITVRNLEAEID 1050
Cdd:TIGR00606 832 -----QEKQHELDTVVSKIELNRKLIQDQ-QEQIQHLKSKTNELKSEKLQigtnlQRRQQFEEQLVELSTEVQSLIREIK 905
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1051 VLKHQNAELDVKKNDKDDEDFQSIEFQ-VEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNSKGREE 1129
Cdd:TIGR00606 906 DAKEQDSPLETFLEKDQQEKEELISSKeTSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQ 985
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1130 MS-AKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDSHVSEVLQENYRLKNELEGLISEKNELKMKSEavMNQFENSM 1208
Cdd:TIGR00606 986 LEeCEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQE--HQKLEENI 1063
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 148612801 1209 RRVKEDTAAHIASLKASHQREI--EKLLCQNAVENSSSKVAELNRKIATQEVLIR 1261
Cdd:TIGR00606 1064 DLIKRNHVLALGRQKGYEKEIKhfKKELREPQFRDAEEKYREMMIVMRTTELVNK 1118
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
789-899 |
2.07e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 789 AELRMAQKEKDSLLEDIKR----LKQDKQaLEVDfEKMKKERDQAKDQIAyvtgEKLYEIKILEETHKQEISRLQKRLQW 864
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKeaeaIKKEAL-LEAK-EEIHKLRNEFEKELR----ERRNELQKLEKRLLQKEENLDRKLEL 104
|
90 100 110
....*....|....*....|....*....|....*
gi 148612801 865 YAENQELLDKDALRLREANEEIEKLKLEIEKLKAE 899
Cdd:PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
786-898 |
2.10e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 786 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEvdfEKMKKERDQAKDQIayvtgEKLYEIKILEEthkqEISRLQKRLqwy 865
Cdd:COG2433 417 RLEEQVERLEAEVEELEAELEEKDERIERLE---RELSEARSEERREI-----RKDREISRLDR----EIERLEREL--- 481
|
90 100 110
....*....|....*....|....*....|...
gi 148612801 866 aenqelldkdalrlREANEEIEKLKLEIEKLKA 898
Cdd:COG2433 482 --------------EEERERIEELKRKLERLKE 500
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
701-937 |
2.68e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 701 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNeermFKENQSLFSEVASLKEQMHKSRFLSQVVEDSEPTR 780
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY----KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 781 NQNFTDLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQK 860
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148612801 861 RLQWYAENQELLDKdalrLREANEEIEKLKLEIEKLKAEsgnpsirqkirlkdKAADAKKIQDLERQVKEMEGILKR 937
Cdd:TIGR04523 498 LKKLNEEKKELEEK----VKDLTKKISSLKEKIEKLESE--------------KKEKESKISDLEDELNKDDFELKK 556
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
786-937 |
2.90e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 786 DLLAELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAyvTGEKlyEIKILEETHKQEISRLQKR---- 861
Cdd:COG3883 27 ELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA--EAEA--EIEERREELGERARALYRSggsv 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 862 -----------LQWYAENQELLDKDALRLREANEEIEKLKLEIEKLKAESGNpSIRQKIRLKDKAADAKKiqDLERQVKE 930
Cdd:COG3883 103 syldvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEA-KLAELEALKAELEAAKA--ELEAQQAE 179
|
....*..
gi 148612801 931 MEGILKR 937
Cdd:COG3883 180 QEALLAQ 186
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
710-932 |
3.74e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 710 IQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQSLfSEVASLKEQMHKSRFLSQVVEDSEPTRNqnftdlLA 789
Cdd:pfam17380 377 MRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQK-VEMEQIRAEQEEARQREVRRLEEERARE------ME 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 790 ELRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYEIK--ILEETHKQEIsrLQKRLQwyaE 867
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKqaMIEEERKRKL--LEKEME---E 524
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 148612801 868 NQELLDKDALRlREANEEIEKlKLEIEKLKaesgnpSIRQKIRL----KDKAADAKKIQDLERQVKEME 932
Cdd:pfam17380 525 RQKAIYEEERR-REAEEERRK-QQEMEERR------RIQEQMRKateeRSRLEAMEREREMMRQIVESE 585
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
700-1307 |
4.62e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 700 GEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFK-----ENQSLFSEVASLKEQMHKSRFLSQVV- 773
Cdd:TIGR00606 318 ERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRArdsliQSLATRLELDGFERGPFSERQIKNFHt 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 774 ------EDSEPTRNQNFTDLLAELRMAQKEKDSLLEDIKRLKQdkqALEVDFEKMKKERDQAKDqiayvtgeKLYEIKIL 847
Cdd:TIGR00606 398 lvierqEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGR---TIELKKEILEKKQEELKF--------VIKELQQL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 848 EETHKQEISRLQKRLQWYAEnqelldkdaLRLREANEEIEKLKLEIEKLKAESGNpsirqkiRLKDKAADAKKIQDLERQ 927
Cdd:TIGR00606 467 EGSSDRILELDQELRKAERE---------LSKAEKNSLTETLKKEVKSLQNEKAD-------LDRKLRKLDQEMEQLNHH 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 928 ---VKEMEGILKRR-------YPNSLPALILAASAAGDTVDKNTVEFMEKRIKKLEADLEGKDEDAKKSLRTMEQqfqkM 997
Cdd:TIGR00606 531 tttRTQMEMLTKDKmdkdeqiRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ----N 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 998 KIQYEQRLEQ-QEQLLACKLNQHDSPRIKALEKELDDIKEahqitvrnleaEIDVLKHQNAELDVKKNDKDdedfqsiEF 1076
Cdd:TIGR00606 607 KNHINNELESkEEQLSSYEDKLFDVCGSQDEESDLERLKE-----------EIEKSSKQRAMLAGATAVYS-------QF 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1077 QVEQAHAKAKLVRLNEELAAKKREIQDLSKtveRLQKDRRMMLSNQNSKGREEMSAKRAKKDVLHSSKGNANsfpgTLDS 1156
Cdd:TIGR00606 669 ITQLTDENQSCCPVCQRVFQTEAELQEFIS---DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS----IIDL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1157 KLYQPHTFTDShVSEVLQENYRLKNELE------GLISEKNELK---MKSEAVMNQFENSMRRVKEDTAAHIASLKAS-- 1225
Cdd:TIGR00606 742 KEKEIPELRNK-LQKVNRDIQRLKNDIEeqetllGTIMPEEESAkvcLTDVTIMERFQMELKDVERKIAQQAAKLQGSdl 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1226 ----HQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKQESLVVSEVRE-------EILQKEITKL 1294
Cdd:TIGR00606 821 drtvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRqqfeeqlVELSTEVQSL 900
|
650
....*....|...
gi 148612801 1295 LEELREAKENHTP 1307
Cdd:TIGR00606 901 IREIKDAKEQDSP 913
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
791-1384 |
4.95e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 791 LRMAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAKDQIAYVTGEKLYeikileethkqeisrLQKRLQWYAENQE 870
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLC---------------TPCMPDTYHERKQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 871 LLDKDalrLREANEEIEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAkKIQDLERQVKEMEGILKRRYPNSLPALILAA 950
Cdd:TIGR00618 223 VLEKE---LKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA-RIEELRAQEAVLEETQERINRARKAAPLAAH 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 951 SAAgdtvdkntVEFMEKRIKKLEADLEgkdedAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKA---- 1026
Cdd:TIGR00618 299 IKA--------VTQIEQQAQRIHTELQ-----SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHevat 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1027 -----LEKELDDIKEAHQITvRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQ---AHAKAKLVRLNEELAAKK 1098
Cdd:TIGR00618 366 sireiSCQQHTLTQHIHTLQ-QQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQgqlAHAKKQQELQQRYAELCA 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1099 REIQDlsKTVERLQKDRRMMLSNQNSKGREEMSA---------KRAKKDVLHSSKGNANSfPGTLDSKLYQPHT-FTDSH 1168
Cdd:TIGR00618 445 AAITC--TAQCEKLEKIHLQESAQSLKEREQQLQtkeqihlqeTRKKAVVLARLLELQEE-PCPLCGSCIHPNPaRQDID 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1169 VSEVLQenyrlkNELEGLISEKNELKMKSEAVMNQFENSMRrvkedtaaHIASLKASHQREIEKLLCQNAVENSSSKVAE 1248
Cdd:TIGR00618 522 NPGPLT------RRMQRGEQTYAQLETSEEDVYHQLTSERK--------QRASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1249 LNRKIatqEVLIRHFqsqvNELQSKQESLVVSEVREEILQKEIT----KLLEELREAKENHTPEMKHFVGLEKKIKQMEM 1324
Cdd:TIGR00618 588 NLQNI---TVRLQDL----TEKLSEAEDMLACEQHALLRKLQPEqdlqDVRLHLQQCSQELALKLTALHALQLTLTQERV 660
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1325 RHAQREQELQQIiqqthQVVETEQNKEVEkwkrlAQLKNRELEKFRTELDSILDVLRELH 1384
Cdd:TIGR00618 661 REHALSIRVLPK-----ELLASRQLALQK-----MQSEKEQLTYWKEMLAQCQTLLRELE 710
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
854-1081 |
6.37e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 854 EISRLQKRLQwyaENQELLDKDALRLREANEEIEKLKLEIEKLKAEsgnpsirqKIRLKDKAADAKK-IQDLERQVKEME 932
Cdd:COG3883 17 QIQAKQKELS---ELQAELEAAQAELDALQAELEELNEEYNELQAE--------LEALQAEIDKLQAeIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 933 GILKRR--------YPNSLPALILAASAAGDTVDKntVEFMEKrikkleadLEGKDEDAKKSLRTMEQQFQKMKIQYEQR 1004
Cdd:COG3883 86 EELGERaralyrsgGSVSYLDVLLGSESFSDFLDR--LSALSK--------IADADADLLEELKADKAELEAKKAELEAK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148612801 1005 LEQQEQLLAcklnqhdspRIKALEKELDDIKEAHQITVRNLEAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQA 1081
Cdd:COG3883 156 LAELEALKA---------ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
886-1323 |
6.55e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 886 IEKLKLEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRrypnslpalilaasaagdtvdkntvefM 965
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEE---------------------------L 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 966 EKRIKKLEADLegkdEDAKKSLRTMEQQFQkmKIQYEQRLEQQEQLLAcklnqHDSPRIKALEKELDDIKEAHQiTVRNL 1045
Cdd:COG4717 101 EEELEELEAEL----EELREELEKLEKLLQ--LLPLYQELEALEAELA-----ELPERLEELEERLEELRELEE-ELEEL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1046 EAEIDVLKHQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKlvRLNEELAAKKREIQDLSKTVERLQKDrrMMLSNQNSK 1125
Cdd:COG4717 169 EAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA--ELEEELEEAQEELEELEEELEQLENE--LEAAALEER 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1126 GREEMSAKRAKKDVL------HSSKGNANSFPGTL----------DSKLYQPHTFTDSHVSEVLQENYRLKNELEGLISE 1189
Cdd:COG4717 245 LKEARLLLLIAAALLallglgGSLLSLILTIAGVLflvlgllallFLLLAREKASLGKEAEELQALPALEELEEEELEEL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1190 KNELKMKSEAVMNQFENSMRRVKE--DTAAHIASLKA-----SHQREIEKLLCQNAVENSSS--KVAELNRKIATQEVLI 1260
Cdd:COG4717 325 LAALGLPPDLSPEELLELLDRIEElqELLREAEELEEelqleELEQEIAALLAEAGVEDEEElrAALEQAEEYQELKEEL 404
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148612801 1261 RHFQSQVNELQSKQESLVVSEVREEiLQKEITKLLEELREAKENHTPEMKHFVGLEKKIKQME 1323
Cdd:COG4717 405 EELEEQLEELLGELEELLEALDEEE-LEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
816-1372 |
8.13e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 8.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 816 EVDFEKMKKERDQAkdqiAYVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDK-----DALRLREANEEIEKLK 890
Cdd:PTZ00121 1078 DFDFDAKEDNRADE----ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEarkaeDARKAEEARKAEDAKR 1153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 891 LEIEKLKAESGNPSIRQKIRLKDKAADAKKIQDLER--QVKEMEGILK----RRYPNSLPalILAASAAGDTVDKNTVEF 964
Cdd:PTZ00121 1154 VEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKaeELRKAEDARKaeaaRKAEEERK--AEEARKAEDAKKAEAVKK 1231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 965 MEKRIKKLEADLEGKDEDAKKSLRTMEQQFQKMKIQYEQRLEQQEQLLACKLNQHDSPRIKALEKELDDIKEAHQITVRN 1044
Cdd:PTZ00121 1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1045 LEAeidvlkhQNAELDVKKNDKDDEDFQSIEFQVEQAHAKAKLVRLNEELAAKKREIQDLSKTVERLQKDRRMMLSNQNS 1124
Cdd:PTZ00121 1312 EEA-------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1125 KGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKlyqphtfTDSHVSEVLQENYRLKNELEGLISEK---NELKMKSEAVm 1201
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAK-------KKADEAKKKAEEKKKADEAKKKAEEAkkaDEAKKKAEEA- 1456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1202 NQFENSMRRVKEDTAAHIASLKASHQREIEKLlcQNAVENSSSKVAELNR----KIATQEVLIRHFQSQVNELQSKQESL 1277
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEA--KKKAEEAKKKADEAKKaaeaKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1278 VVSEVR--------EEILQKEITKLLEELREAKENHTPEMKHFVGLeKKIKQMEMRHAQREQELQQIIQQTHQVVETEQN 1349
Cdd:PTZ00121 1535 KADEAKkaeekkkaDELKKAEELKKAEEKKKAEEAKKAEEDKNMAL-RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
570 580
....*....|....*....|...
gi 148612801 1350 KEVEKWKRLAQLKNRELEKFRTE 1372
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVE 1636
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
773-1303 |
9.74e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 9.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 773 VEDSEPTRNQNFTDLLAELrmAQKEKDSLLEDIKRLKQDKQALEVDFEKMKKERDQAK------DQIAYVTGEKLYEIKI 846
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQI--EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARetrdeaDEVLEEHEERREELET 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 847 LE-----------------ETHKQEISRLQKRLQWYA-ENQELLDK------DALRLREANEEIEKLKLEIEKLKAESgn 902
Cdd:PRK02224 256 LEaeiedlretiaetererEELAEEVRDLRERLEELEeERDDLLAEaglddaDAEAVEARREELEDRDEELRDRLEEC-- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 903 psiRQKIRLKDKAAD--AKKIQDLERQVKEmegilKRRYPNSLPALILAASAAGDTvDKNTVEFMEKRIKKLEADLEGKD 980
Cdd:PRK02224 334 ---RVAAQAHNEEAEslREDADDLEERAEE-----LREEAAELESELEEAREAVED-RREEIEELEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 981 ED-------------AKKSLRTMEQQFQKMKIQYEQRLEQQEQLLA------CKLNQHDSPRIKALEKELDDIKEahqit 1041
Cdd:PRK02224 405 VDlgnaedfleelreERDELREREAELEATLRTARERVEEAEALLEagkcpeCGQPVEGSPHVETIEEDRERVEE----- 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1042 vrnLEAEIDVLKHQNAELDVKKNDKddEDFQSIEFQVEQAHAKAKLVrlnEELAAKKREiqdlskTVERlQKDRRMMLSN 1121
Cdd:PRK02224 480 ---LEAELEDLEEEVEEVEERLERA--EDLVEAEDRIERLEERREDL---EELIAERRE------TIEE-KRERAEELRE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1122 QNSKGREEMSAKRAKKDVLHSSKGNANSFPGTLDSKLYQPHTFTDS--HVSEVLQenyrlknELEGLISEKNELKMKSEA 1199
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESleRIRTLLA-------AIADAEDEIERLREKREA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 1200 VMNQFENSMRRVKEdtaahiaslKASHQREIEKLLCQNAVENSSSKVAELNRKIATQEVLIRHFQSQVNELQSKqeslvV 1279
Cdd:PRK02224 618 LAELNDERRERLAE---------KRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAE-----I 683
|
570 580
....*....|....*....|....
gi 148612801 1280 SEVREEIlqkeitKLLEELREAKE 1303
Cdd:PRK02224 684 GAVENEL------EELEELRERRE 701
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
878-1059 |
9.83e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 878 RLREANEEIEKLkLEIEKLKAESgnpsIRQKIRLKDKAADAKKIQDLERQVKEMEGILKRrypnslpalilaasaagdtv 957
Cdd:PRK12704 32 KIKEAEEEAKRI-LEEAKKEAEA----IKKEALLEAKEEIHKLRNEFEKELRERRNELQK-------------------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148612801 958 dkntvefMEKRIKKLEADLEGKDEDAKK----------SLRTMEQQFQKMKIQYEQRLEQQEQLLAcklnqhdspRIKAL 1027
Cdd:PRK12704 87 -------LEKRLLQKEENLDRKLELLEKreeelekkekELEQKQQELEKKEEELEELIEEQLQELE---------RISGL 150
|
170 180 190
....*....|....*....|....*....|..
gi 148612801 1028 EKElddikEAHQITVRNLEAEidvLKHQNAEL 1059
Cdd:PRK12704 151 TAE-----EAKEILLEKVEEE---ARHEAAVL 174
|
|
| |
