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Conserved domains on  [gi|7525030|ref|NP_051056|]
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photosystem II protein Z (chloroplast) [Arabidopsis thaliana]

Protein Classification

photosystem II reaction center protein Z( domain architecture ID 10000084)

photosystem II reaction center protein Z (PSII-Z) controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbZ CHL00082
photosystem II protein Z
 1-62 1.31e-20

photosystem II protein Z


:

Pssm-ID: 177021  Cd Length: 62  Bit Score: 75.83  E-value: 1.31e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7525030    1 MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS 62
Cdd:CHL00082  1 MTIAFQLAVFALIATSFLLVIGVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS 62
 
Name Accession Description Interval E-value
psbZ CHL00082
photosystem II protein Z
 1-62 1.31e-20

photosystem II protein Z


Pssm-ID: 177021  Cd Length: 62  Bit Score: 75.83  E-value: 1.31e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7525030    1 MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS 62
Cdd:CHL00082  1 MTIAFQLAVFALIATSFLLVIGVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS 62
Ycf9 pfam01737
YCF9; This family consists of the hypothetical protein product of the YCF9 gene from ...
 6-61 1.21e-14

YCF9; This family consists of the hypothetical protein product of the YCF9 gene from chloroplasts and cyanobacteria. These proteins have no known function.


Pssm-ID: 460308  Cd Length: 56  Bit Score: 60.77  E-value: 1.21e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 7525030     6 QLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLI 61
Cdd:pfam01737  1 QLALAALVALSFVLVVGVPVAYATPQNWSQSKNLIFSGSGLWIGLVLLVGVLNFLV 56
PS_II_psbZ TIGR03043
photosystem II core protein PsbZ; PsbZ is a core protein of photosystem II in ...
 4-61 2.11e-14

photosystem II core protein PsbZ; PsbZ is a core protein of photosystem II in thylakoid-containing Cyanobacteria and plant chloroplasts. The original Chlamydomonas gene symbol, ycf9, is a synonym. PsbZ controls the interaction of the reaction center core with the light-harvesting antenna. [Energy metabolism, Photosynthesis]


Pssm-ID: 274405  Cd Length: 58  Bit Score: 60.03  E-value: 2.11e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 7525030     4 AFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLI 61
Cdd:TIGR03043  1 IFQLAVLALVLLSFVLVVGVPVALASPGGWERSKNLIFSGAGLWFGLVLLVGVLNSFV 58
PsbZ COG5735
Photosystem II reaction center protein Z, PsbZ/Ycf9 [Energy production and conversion]; ...
 1-61 4.58e-09

Photosystem II reaction center protein Z, PsbZ/Ycf9 [Energy production and conversion]; Photosystem II reaction center protein Z, PsbZ/Ycf9 is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444445  Cd Length: 61  Bit Score: 46.91  E-value: 4.58e-09
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7525030   1 MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLI 61
Cdd:COG5735  1 MTILFQLALAALVFLSFVMVVGVPVAYASPQNWDQSKKLIWIGSGAWVALVLVVGVLNFLV 61
 
Name Accession Description Interval E-value
psbZ CHL00082
photosystem II protein Z
 1-62 1.31e-20

photosystem II protein Z


Pssm-ID: 177021  Cd Length: 62  Bit Score: 75.83  E-value: 1.31e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7525030    1 MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS 62
Cdd:CHL00082  1 MTIAFQLAVFALIATSFLLVIGVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS 62
Ycf9 pfam01737
YCF9; This family consists of the hypothetical protein product of the YCF9 gene from ...
 6-61 1.21e-14

YCF9; This family consists of the hypothetical protein product of the YCF9 gene from chloroplasts and cyanobacteria. These proteins have no known function.


Pssm-ID: 460308  Cd Length: 56  Bit Score: 60.77  E-value: 1.21e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 7525030     6 QLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLI 61
Cdd:pfam01737  1 QLALAALVALSFVLVVGVPVAYATPQNWSQSKNLIFSGSGLWIGLVLLVGVLNFLV 56
PS_II_psbZ TIGR03043
photosystem II core protein PsbZ; PsbZ is a core protein of photosystem II in ...
 4-61 2.11e-14

photosystem II core protein PsbZ; PsbZ is a core protein of photosystem II in thylakoid-containing Cyanobacteria and plant chloroplasts. The original Chlamydomonas gene symbol, ycf9, is a synonym. PsbZ controls the interaction of the reaction center core with the light-harvesting antenna. [Energy metabolism, Photosynthesis]


Pssm-ID: 274405  Cd Length: 58  Bit Score: 60.03  E-value: 2.11e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 7525030     4 AFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLI 61
Cdd:TIGR03043  1 IFQLAVLALVLLSFVLVVGVPVALASPGGWERSKNLIFSGAGLWFGLVLLVGVLNSFV 58
PsbZ COG5735
Photosystem II reaction center protein Z, PsbZ/Ycf9 [Energy production and conversion]; ...
 1-61 4.58e-09

Photosystem II reaction center protein Z, PsbZ/Ycf9 [Energy production and conversion]; Photosystem II reaction center protein Z, PsbZ/Ycf9 is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444445  Cd Length: 61  Bit Score: 46.91  E-value: 4.58e-09
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7525030   1 MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLI 61
Cdd:COG5735  1 MTILFQLALAALVFLSFVMVVGVPVAYASPQNWDQSKKLIWIGSGAWVALVLVVGVLNFLV 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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