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Conserved domains on  [gi|11467037|ref|NP_041944|]
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photosystem II protein H (chloroplast) [Euglena gracilis]

Protein Classification

photosystem II reaction center protein PsbH( domain architecture ID 10000071)

photosystem II reaction center protein PsbH is one of the components of the core complex of photosystem II (PSII), which is required for its stability and/or assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 1-68 4.89e-34

photosystem II protein H


:

Pssm-ID: 177006  Cd Length: 73  Bit Score: 110.50  E-value: 4.89e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11467037   1 MTTISKNKTSNSKGKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68
Cdd:CHL00066  1 MATQTVEDSSRSGPRRTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLD 68
 
Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 1-68 4.89e-34

photosystem II protein H


Pssm-ID: 177006  Cd Length: 73  Bit Score: 110.50  E-value: 4.89e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11467037   1 MTTISKNKTSNSKGKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68
Cdd:CHL00066  1 MATQTVEDSSRSGPRRTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLD 68
PsbH pfam00737
Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent ...
 17-67 5.57e-21

Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent reaction.


Pssm-ID: 425845  Cd Length: 52  Bit Score: 77.10  E-value: 5.57e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 11467037   17 TTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVIL 67
Cdd:pfam00737  2 TRLGDLLKPLNSEYGKVAPGWGTTPVMGVFMALFAVFLLIILQIYNSSLLL 52
PsbH COG5722
Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; ...
 14-68 5.64e-21

Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; Photosystem II reaction center 10 kDa phosphoprotein, PsbH is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444432  Cd Length: 67  Bit Score: 77.42  E-value: 5.64e-21
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....*
gi 11467037 14 GKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68
Cdd:COG5722  2 AQRTWLGDLLKPLNSEYGKVAPGWGTTPVMGVFMVLFFVFLLIILQIYNSSLLLE 56
 
Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 1-68 4.89e-34

photosystem II protein H


Pssm-ID: 177006  Cd Length: 73  Bit Score: 110.50  E-value: 4.89e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11467037   1 MTTISKNKTSNSKGKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68
Cdd:CHL00066  1 MATQTVEDSSRSGPRRTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLD 68
PLN00055 PLN00055
photosystem II reaction center protein H; Provisional
 1-68 6.92e-27

photosystem II reaction center protein H; Provisional


Pssm-ID: 177686  Cd Length: 73  Bit Score: 92.60  E-value: 6.92e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11467037   1 MTTISKNKTSNSKGKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68
Cdd:PLN00055  1 MATQSVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLD 68
psbH PRK02624
photosystem II reaction center protein PsbH;
14-68 2.15e-21

photosystem II reaction center protein PsbH;


Pssm-ID: 179451  Cd Length: 64  Bit Score: 78.22  E-value: 2.15e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 11467037  14 GKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68
Cdd:PRK02624  2 AQRTRLGDLLKPLNSEYGKVVPGWGTTPVMAVFMVLFLVFLLIILQIYNQSLLLQ 56
PsbH pfam00737
Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent ...
 17-67 5.57e-21

Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent reaction.


Pssm-ID: 425845  Cd Length: 52  Bit Score: 77.10  E-value: 5.57e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 11467037   17 TTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVIL 67
Cdd:pfam00737  2 TRLGDLLKPLNSEYGKVAPGWGTTPVMGVFMALFAVFLLIILQIYNSSLLL 52
PsbH COG5722
Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; ...
 14-68 5.64e-21

Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; Photosystem II reaction center 10 kDa phosphoprotein, PsbH is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444432  Cd Length: 67  Bit Score: 77.42  E-value: 5.64e-21
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....*
gi 11467037 14 GKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68
Cdd:COG5722  2 AQRTWLGDLLKPLNSEYGKVAPGWGTTPVMGVFMVLFFVFLLIILQIYNSSLLLE 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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