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Conserved domains on  [gi|124286811|ref|NP_035034|]
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neurofilament heavy polypeptide [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
94-410 3.20e-112

Intermediate filament protein;


:

Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 350.76  E-value: 3.20e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811    94 SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQ-AGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHL 172
Cdd:pfam00038    1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKgAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   173 LEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQgcgaaQAQ 252
Cdd:pfam00038   81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVS-----DTQ 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   253 AQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEA 332
Cdd:pfam00038  156 VNVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQS 235

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811   333 LKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECR 410
Cdd:pfam00038  236 LKKQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
PTZ00121 super family cl31754
MAEBL; Provisional
 458-1090 8.89e-33

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 138.74  E-value: 8.89e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  458 QTEEIRVTEgVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPA 537
Cdd:PTZ00121 1083 AKEDNRADE-ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE 1241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPA---- 693
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeak 1321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  694 ----EAKSPAEV--KSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE------- 760
Cdd:PTZ00121 1322 kkaeEAKKKADAakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeakkkae 1401

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  761 --AKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVK----- 833
Cdd:PTZ00121 1402 edKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaee 1481

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  834 ---SPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKV--------APKKEEVKSPVK----EEVKAKE 898
Cdd:PTZ00121 1482 akkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkadeAKKAEEKKKADElkkaEELKKAE 1561

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  899 PPKKVEEEKTLPTPKTEAkeSKKDEAPKEAPKPKVEE-KKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKL---- 973
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMA--LRKAEEAKKAEEARIEEvMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlk 1639

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  974 GVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTteSRKPEEKPKMEA--KVKEDDKSL 1051
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL--KKEAEEAKKAEElkKKEAEEKKK 1717

                         650       660       670
                  ....*....|....*....|....*....|....*....
gi 124286811 1052 SKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGEK 1090
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
94-410 3.20e-112

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 350.76  E-value: 3.20e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811    94 SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQ-AGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHL 172
Cdd:pfam00038    1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKgAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   173 LEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQgcgaaQAQ 252
Cdd:pfam00038   81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVS-----DTQ 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   253 AQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEA 332
Cdd:pfam00038  156 VNVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQS 235

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811   333 LKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECR 410
Cdd:pfam00038  236 LKKQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
PTZ00121 PTZ00121
MAEBL; Provisional
 458-1090 8.89e-33

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 138.74  E-value: 8.89e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  458 QTEEIRVTEgVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPA 537
Cdd:PTZ00121 1083 AKEDNRADE-ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE 1241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPA---- 693
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeak 1321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  694 ----EAKSPAEV--KSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE------- 760
Cdd:PTZ00121 1322 kkaeEAKKKADAakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeakkkae 1401

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  761 --AKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVK----- 833
Cdd:PTZ00121 1402 edKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaee 1481

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  834 ---SPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKV--------APKKEEVKSPVK----EEVKAKE 898
Cdd:PTZ00121 1482 akkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkadeAKKAEEKKKADElkkaEELKKAE 1561

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  899 PPKKVEEEKTLPTPKTEAkeSKKDEAPKEAPKPKVEE-KKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKL---- 973
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMA--LRKAEEAKKAEEARIEEvMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlk 1639

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  974 GVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTteSRKPEEKPKMEA--KVKEDDKSL 1051
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL--KKEAEEAKKAEElkKKEAEEKKK 1717

                         650       660       670
                  ....*....|....*....|....*....|....*....
gi 124286811 1052 SKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGEK 1090
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 502-845 1.09e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 79.18  E-value: 1.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  502 PAEEAASPEK----------ETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKS 571
Cdd:NF033609  551 PGEIEPIPEDsdsdpgsdsgSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDS 630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  572 PAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPS 651
Cdd:NF033609  631 ASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  652 EAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEA 731
Cdd:NF033609  711 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 790

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  732 KSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPE 811
Cdd:NF033609  791 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNN 870

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 124286811  812 KAKSP--VKEGAKPPEKAKPLDVKSPEAQTPVQEEA 845
Cdd:NF033609  871 NVVPPnsPKNGTNASNKNEAKDSKEPLPDTGSEDEA 906
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 112-407 4.97e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.47  E-value: 4.97e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   112 KVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQRE 191
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   192 EAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGEL-LGQIQGCGAAQAQAQAEARDALKCDVTSALR 270
Cdd:TIGR02168  765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtLLNEEAANLRERLESLERRIAATERRLEDLE 844

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   271 EIRAQLEGHAVQSTLQSEEwFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDR 350
Cdd:TIGR02168  845 EQIEELSEDIESLAAEIEE-LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811   351 hqadIASYQDAIQQLDSELRNTKwemaAQLRE-YQDLLNVKMALDIEIAAYRKLLEGE 407
Cdd:TIGR02168  924 ----LAQLELRLEGLEVRIDNLQ----ERLSEeYSLTLEEAEALENKIEDDEEEARRR 973
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 98-387 8.70e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.03  E-value: 8.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   98 QLQALNDRFAGyiDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIA 177
Cdd:COG1196   228 ELLLLKLRELE--AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  178 HVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEA 257
Cdd:COG1196   306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  258 RDALkcDVTSALREIRAQLEghAVQSTLQSEEwfrVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTK 337
Cdd:COG1196   386 EELL--EALRAAAELAAQLE--ELEEAEEALL---ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 124286811  338 ESLERQRSELEDRHQADIASYQDAIQQLDsELRNTKWEMAAQLREYQDLL 387
Cdd:COG1196   459 EALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAEADYEGFL 507
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 594-932 2.07e-09

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 61.57  E-value: 2.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  594 KSPSEAKSPAEAKSPAEAkspAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE---AKSPAE 670
Cdd:NF033838  108 KEKSEAELTSKTKKELDA---AFEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEDRRNYPTNTYKTLEleiAESDVE 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  671 AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSpAEAKSPAEVKSPGEaKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:NF033838  185 VKKAELELVKEEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPK 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  751 SPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAkspVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPL 830
Cdd:NF033838  263 RRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKK---VAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTL 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  831 -------DVKSPEAQTP-VQEEAKHPTDIRPPEQVKSPAK-EKAKSPEKEEAKTSEKVApkKEEVKSPVKEEVKAKEPPk 901
Cdd:NF033838  340 eleiaesDVKVKEAELElVKEEAKEPRNEEKIKQAKAKVEsKKAEATRLEKIKTDRKKA--EEEAKRKAAEEDKVKEKP- 416

                         330       340       350
                  ....*....|....*....|....*....|.
gi 124286811  902 kVEEEKTLPTPKTEaKESKKDEAPKEAPKPK 932
Cdd:NF033838  417 -AEQPQPAPAPQPE-KPAPKPEKPAEQPKAE 445
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 687-944 2.33e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 55.39  E-value: 2.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   687 AEPKSPAEaKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVksPGEAKSPGEAKSPAEAKSpAEAKSPIE 766
Cdd:TIGR00927  636 AEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEI--PAERKGEQEGEGEIEAKE-ADHKGETE 711

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   767 VKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDiKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAK 846
Cdd:TIGR00927  712 AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG-EGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   847 HPTD-----IRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKK 921
Cdd:TIGR00927  791 MKGDegaegKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEE 870

                          250       260
                   ....*....|....*....|...
gi 124286811   922 DEAPKEAPKPKVEEKKETPTEKP 944
Cdd:TIGR00927  871 EEEEEEEEEEEEEEEEEEENEEP 893
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 579-872 8.69e-07

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 53.09  E-value: 8.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSpAEAKSPAEAKSPAEaKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:NF033838  195 EEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGE 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  659 AKSPAeaKSPAEAKSPAEvkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAE---AKSPA 735
Cdd:NF033838  273 PATPD--KKENDAKSSDS--SVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDV 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  736 AVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP-----EKAKTPVKegaKSPAEAKSPEKAKSPVKEDikpPAEAKSP 810
Cdd:NF033838  349 KVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAeatrlEKIKTDRK---KAEEEAKRKAAEEDKVKEK---PAEQPQP 422

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  811 EKAKSPVKEGAKPPEKAKPLDVKSPEAQT-------PVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEE 872
Cdd:NF033838  423 APAPQPEKPAPKPEKPAEQPKAEKPADQQaeedyarRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQE 491
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 744-1068 2.40e-06

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 51.55  E-value: 2.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKspEKAKSPVKEDIK--------------PPAEAKS 809
Cdd:NF033838  108 KEKSEAELTSKTKKELDAAFEQFKKDTLEPGKKVAEATKKVEEAE--KKAKDQKEEDRRnyptntyktleleiAESDVEV 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  810 PEKAKSPVKEGAKPPE-----KAKPLDVKSPEAQTPVQEEAKHPTDiRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKE 884
Cdd:NF033838  186 KKAELELVKEEAKEPRdeekiKQAKAKVESKKAEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRR 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  885 -------EVKSPVKEEVKAKEPPKKVEEEkTLPTP------KTEAKESKKDEAPKEAPKPKVEEKKETPTEKPK------ 945
Cdd:NF033838  265 akrgvlgEPATPDKKENDAKSSDSSVGEE-TLPSPslkpekKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKtlelei 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  946 ---DSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPA------ 1016
Cdd:NF033838  344 aesDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAeqpqpa 423

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811 1017 ---APEKKDTKEEKTTESRKPEEKPKMEAKV-----KEDDKSLSKEPSKPKTEKAEKSSS 1068
Cdd:NF033838  424 papQPEKPAPKPEKPAEQPKAEKPADQQAEEdyarrSEEEYNRLTQQQPPKTEKPAQPST 483
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 565-861 3.77e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 50.73  E-value: 3.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   565 SPAEPKSPAEAKSPAEPKSPATvKSPGEAKSPSEAKSPAeakSPAEAKSPAEAKSPAeAKSPAEAKSPAEAKSPATVKSP 644
Cdd:pfam17823   99 EPATREGAADGAASRALAAAAS-SSPSSAAQSLPAAIAA---LPSEAFSAPRAAACR-ANASAAPRAAIAAASAPHAASP 173

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:pfam17823  174 APRTAASSTTAASSTTAASSAPTTAASSAPATL-TPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAA 252

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   725 VKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAK---SPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDI 801
Cdd:pfam17823  253 LATLAAAAGTVASAAGTINMGDPHARRLSPAKhmpSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTL 332

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811   802 KPP-----------------AEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKhPTDIRPPEQVKSPA 861
Cdd:pfam17823  333 EPNtpksvastnlavvtttkAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAG-PGILLAPEQVATEA 408
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 593-746 2.30e-05

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 48.33  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  593 AKSPSEAKSPAeakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPaeaksPAEAK 672
Cdd:cd23959   100 AMAPDESLGPF---RAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPL-----PAAAA 171

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  673 SPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVkSPAEAKSPAAVKSPGEAKSP 746
Cdd:cd23959   172 AQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAA-PASAASFPAAPVANGEAATP 244
PRK11281 PRK11281
mechanosensitive channel MscK;
264-406 1.65e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.06  E-value: 1.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  264 DVTSALREIRAQLEGhAVQSTLQSEEwfrvRLDRLSEAAkVNTDAMRSAQEEITEYRRQLQARTTEL----EALKSTKES 339
Cdd:PRK11281   77 RQKEETEQLKQQLAQ-APAKLRQAQA----ELEALKDDN-DEETRETLSTLSLRQLESRLAQTLDQLqnaqNDLAEYNSQ 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  340 LERQRSELEdRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMA-LDIEIAAYRKLLEG 406
Cdd:PRK11281  151 LVSLQTQPE-RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAlLNAQNDLQRKSLEG 217
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 511-776 1.11e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 43.08  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  511 KETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPaePKSPAEPKSPAEakSPAEPKSPATVKSP 590
Cdd:NF033838  227 KTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATP--DKKENDAKSSDS--SVGEETLPSPSLKP 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  591 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE---AKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKS 667
Cdd:NF033838  303 EKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK 382

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  668 pAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEvkSPAEAKSPAevksPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG 747
Cdd:NF033838  383 -AEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE--KPAEQPQPA----PAPQPEKPAPKPEKPAEQPKAEKPADQQAEED 455

                         250       260
                  ....*....|....*....|....*....
gi 124286811  748 EAKSPAEAKSPAEAKSPIEVKSPEKAKTP 776
Cdd:NF033838  456 YARRSEEEYNRLTQQQPPKTEKPAQPSTP 484
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 824-1076 1.94e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 42.06  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  824 PEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKtsekVAPKKEEVKSPVKEEVKAKEPPKKV 903
Cdd:NF033839  281 QDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPE----VKPQPEKPKPEVKPQLETPKPEVKP 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  904 EEEKTLPTPKTEAkESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKE 983
Cdd:NF033839  357 QPEKPKPEVKPQP-EKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 435

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  984 KTETTKTEAEDTKAKePSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKA 1063
Cdd:NF033839  436 EKPKPEVKPQPEKPK-PEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQAST 514

                         250
                  ....*....|...
gi 124286811 1064 EKSSSTDQKESQP 1076
Cdd:NF033839  515 NEKATNKPKKSLP 527
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 506-734 5.05e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 40.77  E-value: 5.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  506 AASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPA 585
Cdd:NF033838  254 ATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPT 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  586 TVKSPGE---AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSpAEAKSPATVKSpGEAKSPSEAKSPAEAKSP 662
Cdd:NF033838  334 NTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK-AEATRLEKIKT-DRKKAEEEAKRKAAEEDK 411

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  663 AEAKsPAEAKSPAEVKSP-GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK-SPGEAKSPAAVKSPAEAKSP 734
Cdd:NF033838  412 VKEK-PAEQPQPAPAPQPeKPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEyNRLTQQQPPKTEKPAQPSTP 484
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
94-410 3.20e-112

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 350.76  E-value: 3.20e-112
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811    94 SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQ-AGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHL 172
Cdd:pfam00038    1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKgAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   173 LEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQgcgaaQAQ 252
Cdd:pfam00038   81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVS-----DTQ 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   253 AQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEA 332
Cdd:pfam00038  156 VNVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQS 235

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811   333 LKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECR 410
Cdd:pfam00038  236 LKKQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
PTZ00121 PTZ00121
MAEBL; Provisional
 458-1090 8.89e-33

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 138.74  E-value: 8.89e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  458 QTEEIRVTEgVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPA 537
Cdd:PTZ00121 1083 AKEDNRADE-ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE 1241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPA---- 693
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeak 1321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  694 ----EAKSPAEV--KSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE------- 760
Cdd:PTZ00121 1322 kkaeEAKKKADAakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeakkkae 1401

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  761 --AKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVK----- 833
Cdd:PTZ00121 1402 edKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaee 1481

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  834 ---SPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKV--------APKKEEVKSPVK----EEVKAKE 898
Cdd:PTZ00121 1482 akkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkadeAKKAEEKKKADElkkaEELKKAE 1561

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  899 PPKKVEEEKTLPTPKTEAkeSKKDEAPKEAPKPKVEE-KKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKL---- 973
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMA--LRKAEEAKKAEEARIEEvMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlk 1639

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  974 GVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTteSRKPEEKPKMEA--KVKEDDKSL 1051
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL--KKEAEEAKKAEElkKKEAEEKKK 1717

                         650       660       670
                  ....*....|....*....|....*....|....*....
gi 124286811 1052 SKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGEK 1090
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
PTZ00121 PTZ00121
MAEBL; Provisional
 418-1083 3.50e-32

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 136.81  E-value: 3.50e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  418 FSLTEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVEGQtEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAA 497
Cdd:PTZ00121 1097 FGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE-DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDA 1175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  498 ATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PTZ00121 1176 KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA--TVKSPGEAKSPSEA-- 653
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADAak 1335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  654 KSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE---VKSPGEAKSPAAVKSPAE 730
Cdd:PTZ00121 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeakKKAEEDKKKADELKKAAA 1415

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  731 AKSPA--AVKSPGEAKSPGEAKSPAEAKSPA--------EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKED 800
Cdd:PTZ00121 1416 AKKKAdeAKKKAEEKKKADEAKKKAEEAKKAdeakkkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  801 IKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQE-----EAKHPTDIRPPEQVKSpAKEKAKSPEKEEAKT 875
Cdd:PTZ00121 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaeEKKKADELKKAEELKK-AEEKKKAEEAKKAEE 1574

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  876 SEKVAPKKEEVKSPVkEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEE 955
Cdd:PTZ00121 1575 DKNMALRKAEEAKKA-EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  956 AGEKKKAVASEEET---------PAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEE 1026
Cdd:PTZ00121 1654 KAEEENKIKAAEEAkkaeedkkkAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811 1027 KTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSST------------DQKESQPPEKTTED 1083
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeavieeeldeeDEKRRMEVDKKIKD 1802
PTZ00121 PTZ00121
MAEBL; Provisional
 288-1073 1.65e-28

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 124.48  E-value: 1.65e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  288 EEWFRVRLDRLSEAAKVNtDAMRSAQE--EITEYRRQLQARTTElEALKSTKESLERQRSELEDRHQADIASYQDAIQQL 365
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAE-EAKKKAEDarKAEEARKAEDARKAE-EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  366 DSELRNTKWEMAAQLREYQDLLNVKMAldieiAAYRKLLEGEECRigfgpspfslteglpkipsisthiKVKSEEMIKVV 445
Cdd:PTZ00121 1179 EAARKAEEVRKAEELRKAEDARKAEAA-----RKAEEERKAEEAR------------------------KAEDAKKAEAV 1229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  446 EKSEKetviVEGQTEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPG 525
Cdd:PTZ00121 1230 KKAEE----AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  526 EAKSPGEAKSPAE--AKSPGEAKSPGEA--KSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKS 601
Cdd:PTZ00121 1306 EAKKKAEEAKKADeaKKKAEEAKKKADAakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  602 PAEAKSPA-EAKSPAE--AKSPAEAKSPAEAKSPAE--AKSPATVKSPGEAKSPSEAKSPA-EAKSPAEAKSPAE--AKS 673
Cdd:PTZ00121 1386 KAEEKKKAdEAKKKAEedKKKADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKAEeaKKK 1465

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  674 PAEVKSPGEAKSPAEPKSPA-EAKSPAE--VKSPAEAKSPAEVKSPG-EAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEA 749
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKAdEAKKKAEeaKKKADEAKKAAEAKKKAdEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  750 KSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEgAKPPEKAKP 829
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEE 1624

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  830 LDVKSPEAQTPVQEEAKHPTDIRPPEQVKSpAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEE--K 907
Cdd:PTZ00121 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKK-AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakK 1703

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  908 TLPTPKTEAKESKKDEAPK---EAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKE-----EA 979
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeaviEE 1783

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  980 KPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAK-VKEDDKSLSKEPSKP 1058
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADaFEKHKFNKNNENGED 1863

                         810
                  ....*....|....*
gi 124286811 1059 KTEKAEKSSSTDQKE 1073
Cdd:PTZ00121 1864 GNKEADFNKEKDLKE 1878
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 420-878 1.18e-25

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 114.79  E-value: 1.18e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  420 LTEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVEGQ-TEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAA 498
Cdd:PTZ00449  442 VSDGAARLVHLRIKDRIPANNDIYMLKFDEYWTRISKIQfTQEIKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPP 521

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKsrvkEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PTZ00449  522 KAPGDKEGEEGEHEDS----KESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKP 597

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPaeaKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK---- 654
Cdd:PTZ00449  598 KRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSP---KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKfkek 674

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  655 -----SPAEAKS---------PAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE-VKSP-AEAKSPAEVKSPGE 718
Cdd:PTZ00449  675 fyddyLDAAAKSketkttvvlDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEpIGDPdAEQPDDIEFFTPPE 754

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  719 AKSPAAVKSPAEAKSPAA----VKSP---GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSpe 791
Cdd:PTZ00449  755 EERTFFHETPADTPLPDIlaeeFKEEdihAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRLDGLALSTTDLES-- 832

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  792 KAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQV--KSPAKEKAKSPE 869
Cdd:PTZ00449  833 DAGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDGTEADDEDTHPPEEKHKSEVrrRRPPKKPSKPKK 912


                  ....*....
gi 124286811  870 KEEAKTSEK 878
Cdd:PTZ00449  913 PSKPKKPKK 921
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 588-1016 2.34e-21

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 100.53  E-value: 2.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  588 KSPGEAKSPSEAKSPAeaKSPAEAKSPAEAKSPA-EAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAK 666
Cdd:PTZ00449  506 KHDEPPEGPEASGLPP--KAPGDKEGEEGEHEDSkESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPK 583

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  667 SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSP 746
Cdd:PTZ00449  584 DPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSP 663

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  747 GEAKSPAEAKSPAEAKSPIEVKSPEKAKTPV-KEGAKSPAEAKSPEKAKSPVKEDIK-PPAEAKSPEKAKSPVKEgakpP 824
Cdd:PTZ00449  664 KPPFDPKFKEKFYDDYLDAAAKSKETKTTVVlDESFESILKETLPETPGTPFTTPRPlPPKLPRDEEFPFEPIGD----P 739

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  825 EKAKPLDVkspEAQTPVQEEA----KHPTDIRPP----EQVKSP-AKEKAKSPEKEEAKTSekvAPKKEEVKSPVKEEVK 895
Cdd:PTZ00449  740 DAEQPDDI---EFFTPPEEERtffhETPADTPLPdilaEEFKEEdIHAETGEPDEAMKRPD---SPSEHEDKPPGDHPSL 813

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  896 AKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEET-PAKLG 974
Cdd:PTZ00449  814 PKKRHRLDGLALSTTDLESDAGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDGTEADDEDThPPEEK 893

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 124286811  975 VKEEAKPKEKTETTkteaedTKAKEPSKPTETEKPKKEEMPA 1016
Cdd:PTZ00449  894 HKSEVRRRRPPKKP------SKPKKPSKPKKPKKPDSAFIPS 929
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 630-1087 1.06e-19

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 95.53  E-value: 1.06e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  630 KSPAEAKSPATvkSPGEAKSPSEAKSPA-EAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPaevKSPAEAK 708
Cdd:PTZ00449  512 EGPEASGLPPK--APGDKEGEEGEHEDSkESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKP---EFPKDPK 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  709 SPAEVKSPGEAKSPAAVKSPAEAKSPaavKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAktpvkEGAKSPAEAK 788
Cdd:PTZ00449  587 HPKDPEEPKKPKRPRSAQRPTRPKSP---KLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERP-----EGPKIIKSPK 658

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  789 SPEKAKSPVKEDIKPP-------AEAKSPE-KAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDirpPEQVKSP 860
Cdd:PTZ00449  659 PPKSPKPPFDPKFKEKfyddyldAAAKSKEtKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRD---EEFPFEP 735

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  861 AKEkaksPEKEEAKTSEKVAPkkeevksPVKEEVKAKEPPKKVeeektlPTPKTEAKESKKDEAPKEAPKPkveekkETP 940
Cdd:PTZ00449  736 IGD----PDAEQPDDIEFFTP-------PEEERTFFHETPADT------PLPDILAEEFKEEDIHAETGEP------DEA 792

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  941 TEKPKDSTAEAKKEEagekkkavASEEETPAKlgvKEEAKPKEKTETTKTEAEDTKAKEPS-KPTETEKPKkeempaape 1019
Cdd:PTZ00449  793 MKRPDSPSEHEDKPP--------GDHPSLPKK---RHRLDGLALSTTDLESDAGRIAKDASgKIVKLKRSK--------- 852

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124286811 1020 kkdTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKE----PSKPKTEKAEKSSSTDQKESQPPEKTTEDKATK 1087
Cdd:PTZ00449  853 ---SFDDLTTVEEAEEMGAEARKIVVDDDGTEADDedthPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPKK 921
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 642-1079 5.27e-18

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 89.75  E-value: 5.27e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  642 KSPGEAKSPSEAKSPAEAKSPaeaKSPAEAKSPAevKSPGEAKSPAEPKSPA-EAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PTZ00449  491 KSKKKLAPIEEEDSDKHDEPP---EGPEASGLPP--KAPGDKEGEEGEHEDSkESDEPKEGGKPGETKEGEVGKKPGPAK 565

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  721 SPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPvkegaKSPAEAKSPEKAKSPVked 800
Cdd:PTZ00449  566 EHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIP-----KSPKRPESPKSPKRPP--- 637

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  801 ikPPAEAKSPEKAKSP-VKEGAKPPEKAKPldvkspeaqtpvqeeakhPTDIRPPEQVKSPAKEKAkspekeeAKTSE-K 878
Cdd:PTZ00449  638 --PPQRPSSPERPEGPkIIKSPKPPKSPKP------------------PFDPKFKEKFYDDYLDAA-------AKSKEtK 690

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  879 VAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPtPKTEAKESKKDEAPKE--APKPKVEEKKETPTEKPKDSTAEAKKEEA 956
Cdd:PTZ00449  691 TTVVLDESFESILKETLPETPGTPFTTPRPLP-PKLPRDEEFPFEPIGDpdAEQPDDIEFFTPPEEERTFFHETPADTPL 769

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  957 GEKKKAVASEEETPAKLGVKEEAKpkektettkteaedtkaKEPSKPTETEKPKKEEMPAAPEKKDTKEE---KTTE--- 1030
Cdd:PTZ00449  770 PDILAEEFKEEDIHAETGEPDEAM-----------------KRPDSPSEHEDKPPGDHPSLPKKRHRLDGlalSTTDles 832

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811 1031 -----SRKPEEKP-KMEAKVKEDDKSL--SKEPSKPKTEKA---EKSSSTDQKESQPPEK 1079
Cdd:PTZ00449  833 dagriAKDASGKIvKLKRSKSFDDLTTveEAEEMGAEARKIvvdDDGTEADDEDTHPPEE 892
PHA03247 PHA03247
large tegument protein UL36; Provisional
 501-1019 2.42e-17

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 88.07  E-value: 2.42e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  501 PPAEEAASPEKETKSRVKEEAKSPGEAKsPGEAKSPAEAKSPGEAKSPGEAKSPgeaKSPAEPKSPA-EPKSPAEAKSPA 579
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARR-PDAPPQSARPRAPVDDRGDPRGPAP---PSPLPPDTHApDPPPPSPSPAAN 2636

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  580 EPKSPATVKSPgEAKSPSEAKSPAEAKSPAEAKSPAEaksPAEAKSPAEAKSPAEAKsPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PHA03247 2637 EPDPHPPPTVP-PPERPRDDPAPGRVSRPRRARRLGR---AAQASSPPQRPRRRAAR-PTVGSLTSLADPPPPPPTPEPA 2711

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  660 KSPAEAKSPAE-AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVK 738
Cdd:PHA03247 2712 PHALVSATPLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  739 SPG--EAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSP 816
Cdd:PHA03247 2792 SESreSLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  817 VKEGAKPPeKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKakspEKEEAKTSEKVAPKKEEVKSPVKEEVKA 896
Cdd:PHA03247 2872 AAKPAAPA-RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ----PQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  897 KEPPKKVEEEKTLPTPKTEAKESKKDEAPK-EAPKPKveEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGV 975
Cdd:PHA03247 2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRfRVPQPA--PSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSL 3024

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|..
gi 124286811  976 KE--------EAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPE 1019
Cdd:PHA03247 3025 KQtlwppddtEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPE 3076
PHA03247 PHA03247
large tegument protein UL36; Provisional
 500-845 5.79e-17

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 86.92  E-value: 5.79e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPgEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEP----KSPAEPKSPAEA 575
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVP-PPERPRDDPAPGRVSRPRRARRLGRAAQASSPpqrpRRRAARPTVGSL 2695

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  576 KSPAEPKSPatvksPGEAKSPSEAKSPAEAKSPAEAksPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKS 655
Cdd:PHA03247 2696 TSLADPPPP-----PPTPEPAPHALVSATPLPPGPA--AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  656 PAEAKSPAeakSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVK-SPAEAKSP 734
Cdd:PHA03247 2769 PAPPAAPA---AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPtAPPPPPGP 2845

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  735 -AAVKSPGEAKSPGE--AKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKS-PAEAKSPEKAKSPvkediKPPAEAKSP 810
Cdd:PHA03247 2846 pPPSLPLGGSVAPGGdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESfALPPDQPERPPQP-----QAPPPPQPQ 2920

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 124286811  811 EKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEA 845
Cdd:PHA03247 2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
520-764 1.38e-15

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 81.82  E-value: 1.38e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAK-SPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSE 598
Cdd:PRK07003  373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALApKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  599 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATvkspgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK07003  453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP---------RAAAPSAATPAAVPDARAPAAASREDAPA 523

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  679 SPGEAKSPAEPKSPAEAKSPAEVKSPAEA--------------KSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAK 744
Cdd:PRK07003  524 AAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARA 603

                         250       260
                  ....*....|....*....|
gi 124286811  745 SPGEAKSPAEAKSPAEAKSP 764
Cdd:PRK07003  604 ATGDAPPNGAARAEQAAESR 623
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 502-845 1.09e-14

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 79.18  E-value: 1.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  502 PAEEAASPEK----------ETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKS 571
Cdd:NF033609  551 PGEIEPIPEDsdsdpgsdsgSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDS 630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  572 PAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPS 651
Cdd:NF033609  631 ASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  652 EAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEA 731
Cdd:NF033609  711 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 790

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  732 KSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPE 811
Cdd:NF033609  791 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNN 870

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 124286811  812 KAKSP--VKEGAKPPEKAKPLDVKSPEAQTPVQEEA 845
Cdd:NF033609  871 NVVPPnsPKNGTNASNKNEAKDSKEPLPDTGSEDEA 906
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
579-855 5.22e-14

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 76.81  E-value: 5.22e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKsPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPseAKSPAE 658
Cdd:PRK07003  372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA-AGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDA--ADGDAP 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  659 AKSPAEAKSPAEAKSPAEVKSPGEAKSP-AEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PRK07003  449 VPAKANARASADSRCDERDAQPPADSGSaSAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  738 KSPGEAKSPGEAKSPAEAKSPAEAkspIEVKSPEKAKTPVKEGAKSPAEAKSPEKakspvkediKPPAEAKSPEKAKSPV 817
Cdd:PRK07003  529 APEARPPTPAAAAPAARAGGAAAA---LDVLRNAGMRVSSDRGARAAAAAKPAAA---------PAAAPKPAAPRVAVQV 596

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 124286811  818 -KEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPE 855
Cdd:PRK07003  597 pTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPD 635
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 499-816 5.50e-14

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 77.13  E-value: 5.50e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGeakspgeaksPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PHA03307   63 DRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPT----------PPGPSSPDPPPPTPPPASPPPSPAP 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:PHA03307  133 DLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  659 AKSPAEAKSPAEAKSPAeVKSPGEAKSPAEPKSPAEAKSPAE---VKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPA 735
Cdd:PHA03307  213 ISASASSPAPAPGRSAA-DDAGASSSDSSSSESSGCGWGPENecpLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSP 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  736 AVKSPgeAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKT-PVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAK 814
Cdd:PHA03307  292 RERSP--SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTsSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP 369


                  ..
gi 124286811  815 SP 816
Cdd:PHA03307  370 RP 371
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
577-781 5.07e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 73.37  E-value: 5.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  577 SPAEPKSpATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK-SPAEAKSPATVKSPGEAKSPSEAKS 655
Cdd:PRK12323  373 GPATAAA-APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPA 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  656 PAEAKSPAEAKSPAEAKSPAevkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPa 735
Cdd:PRK12323  452 PAPAAAPAAAARPAAAGPRP---VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP- 527

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 124286811  736 avkSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGA 781
Cdd:PRK12323  528 ---DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASA 570
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 525-928 7.59e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 73.10  E-value: 7.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  525 GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAE 604
Cdd:PRK07764  389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  605 AKSPAEAKSPAEAKSPAEAKSPAEAksPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP----AEV--- 677
Cdd:PRK07764  469 APAAAPEPTAAPAPAPPAAPAPAAA--PAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPeatvLGVrgd 546

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  678 ------KSPGEAKSPAEPKSPA------EAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKS 745
Cdd:PRK07764  547 tlvlgfSTGGLARRFASPGNAEvlvtalAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAA 626

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  746 PGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPE 825
Cdd:PRK07764  627 PAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  826 KAKPldvkSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEE 905
Cdd:PRK07764  707 ATPP----AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782

                         410       420
                  ....*....|....*....|...
gi 124286811  906 EKTLPtpktEAKESKKDEAPKEA 928
Cdd:PRK07764  783 EEMAE----DDAPSMDDEDRRDA 801
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
531-747 8.69e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 72.60  E-value: 8.69e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  531 GEAKSPAEAKSPGEAKSPgeAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPAtvkspGEAKSPSEAKSPAEAKSPAE 610
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAP--AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAA-----PARRSPAPEALAAARQASAR 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAtvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPK 690
Cdd:PRK12323  443 GPGGAPAPAPAPAAAPAAAARPAAAGPRP---VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA 519

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811  691 SPAEAKSPaevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG 747
Cdd:PRK12323  520 GWVAESIP----DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 521-855 1.01e-12

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 72.71  E-value: 1.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAK 600
Cdd:PRK07764  391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  601 SPAEAKSPAEAKSPAEAKSP-AEAKSPAEAKSPAEAKSPATVK------------------------------------- 642
Cdd:PRK07764  471 AAAPEPTAAPAPAPPAAPAPaAAPAAPAAPAAPAGADDAATLRerwpeilaavpkrsrktwaillpeatvlgvrgdtlvl 550

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  643 ---SPGEAKS------------------------------PSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEP 689
Cdd:PRK07764  551 gfsTGGLARRfaspgnaevlvtalaeelggdwqveavvgpAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPA 630

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  690 KSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKS 769
Cdd:PRK07764  631 GAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP 710

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  770 PEKAKTPVKEGAKSPAEAKSPEKAKSPvkeDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLD-VKSPEAQTPVQEEAKHP 848
Cdd:PRK07764  711 AGQADDPAAQPPQAAQGASAPSPAADD---PVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAApAAAPPPSPPSEEEEMAE 787


                  ....*..
gi 124286811  849 TDIRPPE 855
Cdd:PRK07764  788 DDAPSMD 794
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 501-795 1.52e-12

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 72.13  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  501 PPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPgeAKSPGEAKSPAepkspaePKSPAEAKSPAE 580
Cdd:PHA03307  118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD--AASSRQAALPL-------SSPEETARAPSS 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAeakspaeAKSPAEAKSPATVKSPGEAKSPsEAKSPAEAK 660
Cdd:PHA03307  189 PPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA-------DDAGASSSDSSSSESSGCGWGP-ENECPLPRP 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  661 SPAEAKSPAEAKSPAEVKSPGeaKSPAEPKSPAEAKSPaevkSPAEAKSPAEVKSPGEAKSPAAVKSP-AEAKSPAAVKS 739
Cdd:PHA03307  261 APITLPTRIWEASGWNGPSSR--PGPASSSSSPRERSP----SPSPSSPGSGPAPSSPRASSSSSSSReSSSSSTSSSSE 334

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811  740 PGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKS 795
Cdd:PHA03307  335 SSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRA 390
PHA03247 PHA03247
large tegument protein UL36; Provisional
 569-944 2.67e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 71.51  E-value: 2.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  569 PKSPAEAKSPAEPKSpatVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAK 648
Cdd:PHA03247 2553 PPLPPAAPPAAPDRS---VPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  649 SPSEAKSPAEAKSPAEA---KSPAEAKSPAEVKSPGEAKSPAEPkspAEAKSPAEVKSPAEAksPAEVKSPGEAKSPAAV 725
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVpppERPRDDPAPGRVSRPRRARRLGRA---AQASSPPQRPRRRAA--RPTVGSLTSLADPPPP 2704

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  726 KSPAEAKSPAAVksPGEAKSPGEAksPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAK-SPAEAKSPEKAKSPVKEDIKPP 804
Cdd:PHA03247 2705 PPTPEPAPHALV--SATPLPPGPA--AARQASPALPAAPAPPAVPAGPATPGGPARPaRPPTTAGPPAPAPPAAPAAGPP 2780

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  805 AEAKSPEKAK-SPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKK 883
Cdd:PHA03247 2781 RRLTRPAVASlSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124286811  884 EEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKP 944
Cdd:PHA03247 2861 DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQP 2921
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 112-407 4.97e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.47  E-value: 4.97e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   112 KVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQRE 191
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   192 EAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGEL-LGQIQGCGAAQAQAQAEARDALKCDVTSALR 270
Cdd:TIGR02168  765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtLLNEEAANLRERLESLERRIAATERRLEDLE 844

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   271 EIRAQLEGHAVQSTLQSEEwFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDR 350
Cdd:TIGR02168  845 EQIEELSEDIESLAAEIEE-LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811   351 hqadIASYQDAIQQLDSELRNTKwemaAQLRE-YQDLLNVKMALDIEIAAYRKLLEGE 407
Cdd:TIGR02168  924 ----LAQLELRLEGLEVRIDNLQ----ERLSEeYSLTLEEAEALENKIEDDEEEARRR 973
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
543-758 8.33e-12

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 69.52  E-value: 8.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  543 GEAKSPGEAKSPGEAKSPA--EPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSpseAKSPAEAKSPAEAKSPAEAKSP 620
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAPAaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA---RRSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  621 AEAKSPAEAKSPAEAKSPATvkspgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPaeakSPAE 700
Cdd:PRK12323  447 APAPAPAPAAAPAAAARPAA---------AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP----APAQ 513

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  701 VKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSP 758
Cdd:PRK12323  514 PDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
583-790 1.10e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 69.13  E-value: 1.10e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  583 SPATVKSPGEAKSPSEAKSPAEAkspAEAKSPAEAKSPAEAKSPAEAKSPAEA---KSPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAA---APAPAAPPAAPAAAPAAAAAARAVAAAparRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  660 KSPAEAKSPAEAKSPAevkspgeAKSPAEPksPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKS 739
Cdd:PRK12323  450 PAPAPAAAPAAAARPA-------AAGPRPV--AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG 520

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124286811  740 PGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSP 790
Cdd:PRK12323  521 WVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
501-711 1.19e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 69.11  E-value: 1.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  501 PPAEEAASPEKETKSRVKEEAKSPgeAKSPGEAKSPAEAKSPGEAKSPGEAKSPgeaksPAEPKSPAEPKSPAEAKSPAE 580
Cdd:PRK07003  419 AATRAEAPPAAPAPPATADRGDDA--ADGDAPVPAKANARASADSRCDERDAQP-----PADSGSASAPASDAPPDAAFE 491

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAT----VKSPGEAKSPSEAKSP 656
Cdd:PRK07003  492 PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAaldvLRNAGMRVSSDRGARA 571

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  657 AEAKSPAEAKSPAEAKSPAEVKSPgeAKSPAEPKSPAEAKSPAEVKSPAEAKSPA 711
Cdd:PRK07003  572 AAAAKPAAAPAAAPKPAAPRVAVQ--VPTPRARAATGDAPPNGAARAEQAAESRG 624
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 526-868 1.38e-11

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 69.04  E-value: 1.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  526 EAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAepkSPAEAKSPAEPKSPATVKSPGeakSPSEAKSPAEA 605
Cdd:PHA03307   12 EAAAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAV---TVVAGAAACDRFEPPTGPPPG---PGTEAPANESR 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  606 KSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PHA03307   86 STPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  686 PAEPKSPAEAKSPAEvkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG-EAKSPAEAKSPAEAKS- 763
Cdd:PHA03307  166 AASSRQAALPLSSPE--ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGrSAADDAGASSSDSSSSe 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  764 ------------PIEVKSPEKAKTPVKEGA--------KSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKP 823
Cdd:PHA03307  244 ssgcgwgpenecPLPRPAPITLPTRIWEASgwngpssrPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 124286811  824 PEKAKPLDVKSPEAQTPV---QEEAKHPTDIRPPEQVKSPAKEKAKSP 868
Cdd:PHA03307  324 SSSSSTSSSSESSRGAAVspgPSPSRSPSPSRPPPPADPSSPRKRPRP 371
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
500-729 1.93e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 68.34  E-value: 1.93e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPA 579
Cdd:PRK07003  396 VPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  580 EPKSPAtvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PRK07003  476 SASAPA---SDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAA 552

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  660 ----------KSPAEAKSPAEAKSPAevkspgeAKSPAEPKsPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK07003  553 ldvlrnagmrVSSDRGARAAAAAKPA-------AAPAAAPK-PAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
521-759 3.44e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 67.57  E-value: 3.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAepKSPATVKSPGEAKSPSEAK 600
Cdd:PRK07003  385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAA--DGDAPVPAKANARASADSR 462

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  601 SPAEAKSPAEAKSP-AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK---------SPAEAKSPAEaksPAE 670
Cdd:PRK07003  463 CDERDAQPPADSGSaSAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASredapaaaaPPAPEARPPT---PAA 539

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  671 AKSPAevKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:PRK07003  540 AAPAA--RAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPA--AAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAAR 615


                  ....*....
gi 124286811  751 SPAEAKSPA 759
Cdd:PRK07003  616 AEQAAESRG 624
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
604-844 7.83e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 66.44  E-value: 7.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  604 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAeAKSPAEAKSPAEAKSPAEVKSPGEA 683
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  684 KSPAEPKSPAEAKSPAevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKS 763
Cdd:PRK12323  450 PAPAPAAAPAAAARPA---AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  764 PIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkedikPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQE 843
Cdd:PRK12323  527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPV-----VAPRPPRASASGLPDMFDGDWPALAARLPVRGLAQQLARQS 601


                  .
gi 124286811  844 E 844
Cdd:PRK12323  602 E 602
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
499-699 1.63e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 65.28  E-value: 1.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAK-SPGEAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PRK12323  372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPA 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  578 PAEPKSPATVKSPGEAKS---PSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK 654
Cdd:PRK12323  452 PAPAAAPAAAARPAAAGPrpvAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 124286811  655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPA 699
Cdd:PRK12323  532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 539-755 2.37e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 65.01  E-value: 2.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  539 AKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAksPAEAKSPAEAK 618
Cdd:PRK07764  594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP--DASDGGDGWPA 671

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  619 SPAEAKSPAEAKSPAEAKSPAtvKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSP 698
Cdd:PRK07764  672 KAGGAAPAAPPPAPAPAAPAA--PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811  699 AEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAksPAAVKSPGEAKSPGEAKSPAEA 755
Cdd:PRK07764  750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE--EEMAEDDAPSMDDEDRRDAEEV 804
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 500-817 4.65e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 63.85  E-value: 4.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSP-AEPKSPAEPKSPAEAKSP 578
Cdd:PRK07764  424 APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPpAAPAPAAAPAAPAAPAAP 503

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVK----------------------------------------SPGEAKSPSEAKSPA------------EAK 606
Cdd:PRK07764  504 AGADDAATLRerwpeilaavpkrsrktwaillpeatvlgvrgdtlvlgfsTGGLARRFASPGNAEvlvtalaeelggDWQ 583

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  607 SPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PRK07764  584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAS 663

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  687 AEPK-SPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPI 765
Cdd:PRK07764  664 DGGDgWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP 743

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 124286811  766 EVKSPEKAKTPVKEGAksPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPV 817
Cdd:PRK07764  744 EPDDPPDPAGAPAQPP--PPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
609-868 4.78e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 63.72  E-value: 4.78e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKsPGEAKSPSEA--KSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PRK07003  372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA-AGAALAPKAAaaAAATRAEAPPAAPAPPATADRGDDAADGDAPVP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  687 AEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAeakSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPie 766
Cdd:PRK07003  451 AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPA---PRAAAPSAATPAAVPDARAPAAASREDAPAAA-- 525

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  767 vKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLdVKSPEAQTPVQEEAK 846
Cdd:PRK07003  526 -APPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPA-APRVAVQVPTPRARA 603

                         250       260
                  ....*....|....*....|..
gi 124286811  847 HPTDIRPPEQVKSPAKEKAKSP 868
Cdd:PRK07003  604 ATGDAPPNGAARAEQAAESRGA 625
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 98-387 8.70e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.03  E-value: 8.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   98 QLQALNDRFAGyiDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIA 177
Cdd:COG1196   228 ELLLLKLRELE--AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  178 HVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEA 257
Cdd:COG1196   306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  258 RDALkcDVTSALREIRAQLEghAVQSTLQSEEwfrVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTK 337
Cdd:COG1196   386 EELL--EALRAAAELAAQLE--ELEEAEEALL---ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 124286811  338 ESLERQRSELEDRHQADIASYQDAIQQLDsELRNTKWEMAAQLREYQDLL 387
Cdd:COG1196   459 EALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAEADYEGFL 507
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 555-676 1.23e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.42  E-value: 1.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  555 GEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPA-EAKSPAEAKSPAEAKSPA 633
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAaAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 124286811  634 EAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE 676
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 594-932 2.07e-09

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 61.57  E-value: 2.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  594 KSPSEAKSPAEAKSPAEAkspAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE---AKSPAE 670
Cdd:NF033838  108 KEKSEAELTSKTKKELDA---AFEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEDRRNYPTNTYKTLEleiAESDVE 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  671 AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSpAEAKSPAEVKSPGEaKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:NF033838  185 VKKAELELVKEEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPK 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  751 SPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAkspVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPL 830
Cdd:NF033838  263 RRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKK---VAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTL 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  831 -------DVKSPEAQTP-VQEEAKHPTDIRPPEQVKSPAK-EKAKSPEKEEAKTSEKVApkKEEVKSPVKEEVKAKEPPk 901
Cdd:NF033838  340 eleiaesDVKVKEAELElVKEEAKEPRNEEKIKQAKAKVEsKKAEATRLEKIKTDRKKA--EEEAKRKAAEEDKVKEKP- 416

                         330       340       350
                  ....*....|....*....|....*....|.
gi 124286811  902 kVEEEKTLPTPKTEaKESKKDEAPKEAPKPK 932
Cdd:NF033838  417 -AEQPQPAPAPQPE-KPAPKPEKPAEQPKAE 445
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
520-729 2.35e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 61.43  E-value: 2.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSE- 598
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAp 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  599 AKSPAEAKSPAEAKSPAEAKSPaeaksPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK12323  451 APAPAAAPAAAARPAAAGPRPV-----AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAES 525

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124286811  679 SPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK12323  526 IPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
645-829 3.73e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 60.66  E-value: 3.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGE-----A 719
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGpggapA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  720 KSPAAVKSPAEAKSPAAVKS---PGEAKSPGEAKSPAEAKSPA-EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSpEKAKS 795
Cdd:PRK12323  450 PAPAPAAAPAAAARPAAAGPrpvAAAAAAAPARAAPAAAPAPAdDDPPPWEELPPEFASPAPAQPDAAPAGWVA-ESIPD 528

                         170       180       190
                  ....*....|....*....|....*....|....
gi 124286811  796 PVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKP 829
Cdd:PRK12323  529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
562-829 4.51e-09

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 59.99  E-value: 4.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  562 EPKSPAEPKSPAEAKSPAEPKSPATVKSPGE-AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAT 640
Cdd:PRK07735    3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEiSKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  641 VKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK07735   83 EEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDK 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  721 SPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKED 800
Cdd:PRK07735  163 EKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAA 242

                         250       260
                  ....*....|....*....|....*....
gi 124286811  801 IKPPAEAKSPEKAKSPVKEGAKPPEKAKP 829
Cdd:PRK07735  243 AKAKAAAAARAKTKGAEGKKEEEPKQEEP 271
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 532-827 7.38e-09

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 60.26  E-value: 7.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  532 EAKSPAEAKSPGEAKSPGEAKSPGEAKSPAePKSPAePKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPaeakspaEA 611
Cdd:PLN03237 1172 DAKAEEAREKLQRAAARGESGAAKKVSRQA-PKKPA-PKKTTKKASESETTEETYGSSAMETENVAEVVKP-------KG 1242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  612 KSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSeAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKS 691
Cdd:PLN03237 1243 RAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQS-AKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA 1321

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  692 PAEAKSPAEVK----SPAEAKSPAevkspgeAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK-SPAEAKSPAEAKSPIE 766
Cdd:PLN03237 1322 VEVSLAERLKKkggrKPAAANKKA-------AKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIgISPEKKVRKMRASPFN 1394

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124286811  767 VKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKA 827
Cdd:PLN03237 1395 KKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESA 1455
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 615-740 7.61e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 59.73  E-value: 7.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVkspgeAKSPAEPKSPAE 694
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA-----APAAAPAAAPAA 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 124286811  695 AkSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSP 740
Cdd:PRK14951  445 V-ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 585-807 7.93e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 60.00  E-value: 7.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  585 ATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE 664
Cdd:PRK07764  586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  665 AK-SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEA 743
Cdd:PRK07764  666 GDgWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAkspekAKSPVKEDIKPPAEA 807
Cdd:PRK07764  746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD-----APSMDDEDRRDAEEV 804
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 609-729 9.51e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 59.34  E-value: 9.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 124286811  689 PKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 563-689 1.28e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 58.96  E-value: 1.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  563 PKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKS-PAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATV 641
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 124286811  642 KSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEP 689
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 503-729 1.42e-08

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 59.11  E-value: 1.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  503 AEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPgEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEA----KSP 578
Cdd:PLN03237 1201 APKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKP-KGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAynldSAP 1279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEP-KSPATVKSPGEAKSPSEAKSPAEAKSPAEAK----------SPAEAKSPAEAKSPAEAKSPAeAKSPATVKSPGEA 647
Cdd:PLN03237 1280 AQSaKMEETVKAVPARRAAARKKPLASVSVISDSDdddddfavevSLAERLKKKGGRKPAAANKKA-AKPPAAAKKRGPA 1358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  648 KSPSEAKSPAEAKSPAEAKSPAEAKSPAEV-KSPGEAKSPAEPKSPAEAKSP--AEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:PLN03237 1359 TVQSGQKLLTEMLKPAEAIGISPEKKVRKMrASPFNKKSGSVLGRAATNKETesSENVSGSSSSEKDEIDVSAKPRPQRA 1438


                  ....*
gi 124286811  725 VKSPA 729
Cdd:PLN03237 1439 NRKQT 1443
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 573-787 1.71e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 58.84  E-value: 1.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  573 AEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSE 652
Cdd:PRK07764  586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  653 AK-SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEA 731
Cdd:PRK07764  666 GDgWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  732 KS---PAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEA 787
Cdd:PRK07764  746 DDppdPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
499-669 2.57e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 58.32  E-value: 2.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSP-------AEPKSPAEPKS 571
Cdd:PRK07003  421 TRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASdappdaaFEPAPRAAAPS 500

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  572 PAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA--------------------------KSPAEAKS 625
Cdd:PRK07003  501 AATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAggaaaaldvlrnagmrvssdrgaraaAAAKPAAA 580

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 124286811  626 PAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPA 669
Cdd:PRK07003  581 PAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 645-764 3.47e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 57.42  E-value: 3.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 124286811  725 VKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSP 764
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 569-700 3.62e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 57.42  E-value: 3.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  569 PKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATvkspgEAK 648
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAA-----PAA 440

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 124286811  649 SPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE 700
Cdd:PRK14951  441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 598-716 4.22e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 57.42  E-value: 4.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  598 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKS-PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAE 676
Cdd:PRK14951  371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV-ALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 124286811  677 VKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSP 716
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 499-735 4.34e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 57.49  E-value: 4.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSRVKEEAKSPGeAKSPGEAKSPAEAKSPGEAKSPG-EAKSPGEAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PHA03307  195 PSTPPAAASPRPPRRSSPISASASSPA-PAPGRSAADDAGASSSDSSSSESsGCGWGPENECPLPRPAPITLPTRIWEAS 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAkSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPa 657
Cdd:PHA03307  274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS-SSRESSSSSTSSSSESSRGAAVSPGPSPSRSP- 351

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  658 eakSPAEAKSPAEAKSPAEvKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPA 735
Cdd:PHA03307  352 ---SPSRPPPPADPSSPRK-RPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 500-759 5.69e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 57.10  E-value: 5.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEketksrvkEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPA 579
Cdd:PHA03307  170 RQAALPLSSPE--------ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSS 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  580 EPKSPATVKSPGEAKSPseakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATvkSPGEAKSPSeAKSPAEA 659
Cdd:PHA03307  242 SESSGCGWGPENECPLP----RPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSP--SPSSPGSGP-APSSPRA 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  660 KSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEvKSPGEAKSPAAVKSPAEAKSPAAVKS 739
Cdd:PHA03307  315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRK-RPRPSRAPSSPAASAGRPTRRRARAA 393

                         250       260
                  ....*....|....*....|
gi 124286811  740 PGEAKSPGEAKSPAEAKSPA 759
Cdd:PHA03307  394 VAGRARRRDATGRFPAGRPR 413
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 581-712 6.10e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 56.65  E-value: 6.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPgeaksPSEAKSPAEAK 660
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP-----AAAAPAAAPAA 440

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 124286811  661 SPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE 712
Cdd:PRK14951  441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 603-723 6.48e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 56.65  E-value: 6.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  603 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKS-PGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPG 681
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 124286811  682 EAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPA 723
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
500-770 8.25e-08

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 56.14  E-value: 8.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGE-AKSPAEAKSPGEAKSPGEAKSPGEAK----SPAEPKSPAEPKSPAE 574
Cdd:PRK07735    1 MDPEKDLEDLKKEAARRAKEEARKRLVAKHGAEiSKLEEENREKEKALPKNDDMTIEEAKrraaAAAKAKAAALAKQKRE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  575 AKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK 654
Cdd:PRK07735   81 GTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEET 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PRK07735  161 DKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAI 240

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 124286811  735 AAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP 770
Cdd:PRK07735  241 AAAKAKAAAAARAKTKGAEGKKEEEPKQEEPSVNQP 276
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 858-1070 1.43e-07

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 55.39  E-value: 1.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  858 KSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKK 937
Cdd:PRK05901    2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  938 ETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAA 1017
Cdd:PRK05901   82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDD 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 124286811 1018 PEKKDTKEEKTTEsrkPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSSTD 1070
Cdd:PRK05901  162 DDDVDDEDEEKKE---AKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATAD 211
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 627-749 2.02e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 55.11  E-value: 2.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  627 AEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPA-EPKSPAEAKSPAEVKSPA 705
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAaAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 124286811  706 EAKSPAE---VKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEA 749
Cdd:PRK14951  450 APPAQAApetVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 537-664 2.32e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 55.11  E-value: 2.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  537 AEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPseaksPAEAKSPAEAKSPAE 616
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP-----AAAAPAAAPAAAPAA 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 124286811  617 AKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE 664
Cdd:PRK14951  445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 687-944 2.33e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 55.39  E-value: 2.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   687 AEPKSPAEaKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVksPGEAKSPGEAKSPAEAKSpAEAKSPIE 766
Cdd:TIGR00927  636 AEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEI--PAERKGEQEGEGEIEAKE-ADHKGETE 711

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   767 VKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDiKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAK 846
Cdd:TIGR00927  712 AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG-EGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   847 HPTD-----IRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKK 921
Cdd:TIGR00927  791 MKGDegaegKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEE 870

                          250       260
                   ....*....|....*....|...
gi 124286811   922 DEAPKEAPKPKVEEKKETPTEKP 944
Cdd:TIGR00927  871 EEEEEEEEEEEEEEEEEEENEEP 893
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
645-827 2.69e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.86  E-value: 2.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:PRK07003  365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAAD 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  725 VKSPAE--AKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPE-KAKTPVKEGAKSPAEAKSPEKAKSPvkeDI 801
Cdd:PRK07003  445 GDAPVPakANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPApRAAAPSAATPAAVPDARAPAAASRE---DA 521

                         170       180
                  ....*....|....*....|....*.
gi 124286811  802 KPPAEAKSPEkAKSPVKEGAKPPEKA 827
Cdd:PRK07003  522 PAAAAPPAPE-ARPPTPAAAAPAARA 546
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 525-647 2.70e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 54.72  E-value: 2.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  525 GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAE 604
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 124286811  605 AKSPAEAKS----PAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEA 647
Cdd:PRK14951  450 APPAQAAPEtvaiPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 855-1090 2.84e-07

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 55.05  E-value: 2.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  855 EQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPK--EAPKPK 932
Cdd:PTZ00108 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNssGSDQED 1227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  933 VEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPteTEKPKKE 1012
Cdd:PTZ00108 1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNG--GSKPSSP 1305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811 1013 EMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPS---KPKTEKAEKSSSTDQKESQPPEKTTEDKATKGE 1089
Cdd:PTZ00108 1306 TKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSsrlLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385


                  .
gi 124286811 1090 K 1090
Cdd:PTZ00108 1386 D 1386
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 675-791 3.07e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 54.34  E-value: 3.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  675 AEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAE 754
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 124286811  755 AKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPE 791
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAA 486
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
667-875 3.38e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 3.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  667 SPAEAKSpAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevksPGEAKSPAAvKSPAEAKSPAAVKSPGEAKSP 746
Cdd:PRK12323  373 GPATAAA-APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAA----RAVAAAPAR-RSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  747 GEAKSPAEAKSPAEAKSPievksPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEK 826
Cdd:PRK12323  447 APAPAPAPAAAPAAAARP-----AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 124286811  827 AKPLDVKSPEAQTPVQEEAkhptdiRPPEQVKSPAKEKAKSPEKEEAKT 875
Cdd:PRK12323  522 VAESIPDPATADPDDAFET------LAPAPAAAPAPRAAAATEPVVAPR 564
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
680-940 3.65e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.47  E-value: 3.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  680 PGEAKSPAEPKS--PAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKS 757
Cdd:PRK07003  368 PGGGVPARVAGAvpAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  758 PAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSP-EKAKSPVKEDIKPPAEAKSPekAKSPVKEGAKPPEKAKPLDVKSPE 836
Cdd:PRK07003  448 PVPAKANARASADSRCDERDAQPPADSGSASAPaSDAPPDAAFEPAPRAAAPSA--ATPAAVPDARAPAAASREDAPAAA 525

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  837 AQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEktLPTPKTEA 916
Cdd:PRK07003  526 APPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQ--VPTPRARA 603

                         250       260
                  ....*....|....*....|....
gi 124286811  917 KESKKDEAPKeAPKPKVEEKKETP 940
Cdd:PRK07003  604 ATGDAPPNGA-ARAEQAAESRGAP 626
PHA03378 PHA03378
EBNA-3B; Provisional
 563-876 4.04e-07

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 54.30  E-value: 4.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  563 PKSPAEPKSPAEAKSPAEPKSPATVkspGEAKSPSEAKSPAEAKSPAEAksPAEAKSPAEAKSPAEAKSPAEAKSPATVK 642
Cdd:PHA03378  655 PQVEITPYKPTWTQIGHIPYQPSPT---GANTMLPIQWAPGTMQPPPRA--PTPMRPPAAPPGRAQRPAAATGRARPPAA 729

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  643 SPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAkSPAEVKSPAEAKSPAEVKSPGEAKSP 722
Cdd:PHA03378  730 APGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQA-PPAPQQRPRGAPTPQPPPQAGPTSMQ 808

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  723 AAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPekaktpvkegakSPAEAKSPEKAKSPVkedIK 802
Cdd:PHA03378  809 LMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTP------------SPGSGTSDKIVQAPV---FY 873

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811  803 PPAEAKS--PEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVqeeakHPTDIRPPEQVKSPAKEKAKSPEKEEAKTS 876
Cdd:PHA03378  874 PPVLQPIqvMRQLGSVRAAAASTVTQAPTEYTGERRGVGPM-----HPTDIPPSKRAKTDAYVESQPPHGGQSHSF 944
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 657-897 5.25e-07

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 54.10  E-value: 5.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  657 AEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAvKSPAEAKSPAA 736
Cdd:PLN03237 1175 AEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKG-RAGAKKKAPAA 1253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  737 VKSPGEAKSPGEAKSPAEA---KSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSP-----VKEDIKPPAEAK 808
Cdd:PLN03237 1254 AKEKEEEDEILDLKDRLAAynlDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDdddfaVEVSLAERLKKK 1333

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  809 SPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTD---IRPPEQV----KSPAKEKAKSP-----EKEEAKTS 876
Cdd:PLN03237 1334 GGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEaigISPEKKVrkmrASPFNKKSGSVlgraaTNKETESS 1413

                         250       260
                  ....*....|....*....|.
gi 124286811  877 EKVAPKKEEVKSPVKEEVKAK 897
Cdd:PLN03237 1414 ENVSGSSSSEKDEIDVSAKPR 1434
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 531-658 5.79e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 53.56  E-value: 5.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  531 GEAKSPAEAKSPGEAKSPGEAKSPgeaksPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE 610
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAP-----VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 124286811  611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:PRK14951  445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 689-810 6.70e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 53.56  E-value: 6.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  689 PKSPAEAKSPAEVKSPAEAKSPAEVKSP-GEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEV 767
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPvAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 124286811  768 KSPEKAKTPVKEGAKSPAEAKSPEKAkSPVKEDIKPPAEAKSP 810
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPA-VASAAPAPAAAPAAAR 487
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 569-730 8.56e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 52.95  E-value: 8.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  569 PKSP-AEAKSPAEPKSPAtvksPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEA 647
Cdd:PRK07994  361 PAAPlPEPEVPPQSAAPA----ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  648 KSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPkSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKS 727
Cdd:PRK07994  437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515


                  ...
gi 124286811  728 PAE 730
Cdd:PRK07994  516 LAA 518
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 579-872 8.69e-07

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 53.09  E-value: 8.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSpAEAKSPAEAKSPAEaKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:NF033838  195 EEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGE 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  659 AKSPAeaKSPAEAKSPAEvkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAE---AKSPA 735
Cdd:NF033838  273 PATPD--KKENDAKSSDS--SVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDV 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  736 AVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP-----EKAKTPVKegaKSPAEAKSPEKAKSPVKEDikpPAEAKSP 810
Cdd:NF033838  349 KVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAeatrlEKIKTDRK---KAEEEAKRKAAEEDKVKEK---PAEQPQP 422

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  811 EKAKSPVKEGAKPPEKAKPLDVKSPEAQT-------PVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEE 872
Cdd:NF033838  423 APAPQPEKPAPKPEKPAEQPKAEKPADQQaeedyarRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQE 491
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 499-692 1.43e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPgeakSPAEPKSPAEPK-SPAEAKS 577
Cdd:PHA03307  241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP----SPSPSSPGSGPApSSPRASS 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkSPAEAKSPATVKSPGEAKSPSEAKSPA 657
Cdd:PHA03307  317 SSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKR-PRPSRAPSSPAASAGRPTRRRARAAVA 395

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 124286811  658 EAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSP 692
Cdd:PHA03307  396 GRARRRDATGRFPAGRPRPSPLDAGAASGAFYARY 430
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 633-761 2.04e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 2.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  633 AEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE 712
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 124286811  713 VKSPGEAKSPAAVksPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEA 761
Cdd:PRK14951  450 APPAQAAPETVAI--PVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 663-777 2.18e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 2.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  663 AEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGE 742
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 124286811  743 AKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPV 777
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 617-779 2.36e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.79  E-value: 2.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  617 AKSPAEAkSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEVKSPGEAKSPAEPKSPAEAK 696
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGA 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  697 SPAEVKSPAEAKSPAEVKSPGE---AKSPAAVKSPAEAKSPAAvkSPGEAKSPGEAKSPAEAKsPAEAKSPIE-VKSPEK 772
Cdd:PRK07994  436 TKAKKSEPAAASRARPVNSALErlaSVRPAPSALEKAPAKKEA--YRWKATNPVEVKKEPVAT-PKALKKALEhEKTPEL 512


                  ....*..
gi 124286811  773 AKTPVKE 779
Cdd:PRK07994  513 AAKLAAE 519
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 744-1068 2.40e-06

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 51.55  E-value: 2.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKspEKAKSPVKEDIK--------------PPAEAKS 809
Cdd:NF033838  108 KEKSEAELTSKTKKELDAAFEQFKKDTLEPGKKVAEATKKVEEAE--KKAKDQKEEDRRnyptntyktleleiAESDVEV 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  810 PEKAKSPVKEGAKPPE-----KAKPLDVKSPEAQTPVQEEAKHPTDiRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKE 884
Cdd:NF033838  186 KKAELELVKEEAKEPRdeekiKQAKAKVESKKAEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRR 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  885 -------EVKSPVKEEVKAKEPPKKVEEEkTLPTP------KTEAKESKKDEAPKEAPKPKVEEKKETPTEKPK------ 945
Cdd:NF033838  265 akrgvlgEPATPDKKENDAKSSDSSVGEE-TLPSPslkpekKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKtlelei 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  946 ---DSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPA------ 1016
Cdd:NF033838  344 aesDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAeqpqpa 423

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811 1017 ---APEKKDTKEEKTTESRKPEEKPKMEAKV-----KEDDKSLSKEPSKPKTEKAEKSSS 1068
Cdd:NF033838  424 papQPEKPAPKPEKPAEQPKAEKPADQQAEEdyarrSEEEYNRLTQQQPPKTEKPAQPST 483
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 875-1090 2.72e-06

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 51.97  E-value: 2.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  875 TSEKVAPKKEEVKSPVKE--EVKAKEPP-------KKVEE---------EKTLPTPKTEAKESKKDEAPKEAPKPKVEEK 936
Cdd:PTZ00108 1100 TKEKVEKLNAELEKKEKEleKLKNTTPKdmwledlDKFEEaleeqeeveEKEIAKEQRLKSKTKGKASKLRKPKLKKKEK 1179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  937 KETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPA 1016
Cdd:PTZ00108 1180 KKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDE 1259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811 1017 APEKKDTKEEKTTESRKP-------EEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGE 1089
Cdd:PTZ00108 1260 FSSDDLSKEGKPKNAPKRvsavqysPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKT 1339


                  .
gi 124286811 1090 K 1090
Cdd:PTZ00108 1340 R 1340
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
205-399 2.92e-06

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 51.56  E-value: 2.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  205 QEAEAARVELQKKAQALQEecgYLRRHH----QEEVGELLGQIQGCGA------AQAQAQAEARDALKCDVTSALREIRA 274
Cdd:COG3206   182 EQLPELRKELEEAEAALEE---FRQKNGlvdlSEEAKLLLQQLSELESqlaearAELAEAEARLAALRAQLGSGPDALPE 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  275 QLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTE-LEALKSTKESLERQRSELEDRhQA 353
Cdd:COG3206   259 LLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLASLEAELEALQAREASLQAQ-LA 337

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 124286811  354 DIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAA 399
Cdd:COG3206   338 QLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEAL 383
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 544-630 3.59e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 51.43  E-value: 3.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  544 EAKSPGEAKSPgeAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEA 623
Cdd:PRK12270   34 ADYGPGSTAAP--TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111


                  ....*..
gi 124286811  624 KSPAEAK 630
Cdd:PRK12270  112 AVEDEVT 118
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 502-672 3.73e-06

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 50.58  E-value: 3.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEP 581
Cdd:PRK09510   92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKA 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  582 KSPATVKSPGEAKSPSEAKspAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAtvkspgeAKSPSEAKSPAEAKS 661
Cdd:PRK09510  172 EAEAAKKAAAEAKKKAEAE--AAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA-------AKAAAEAKAAAEKAA 242

                         170
                  ....*....|.
gi 124286811  662 PAEAKSPAEAK 672
Cdd:PRK09510  243 AAKAAEKAAAA 253
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 565-861 3.77e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 50.73  E-value: 3.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   565 SPAEPKSPAEAKSPAEPKSPATvKSPGEAKSPSEAKSPAeakSPAEAKSPAEAKSPAeAKSPAEAKSPAEAKSPATVKSP 644
Cdd:pfam17823   99 EPATREGAADGAASRALAAAAS-SSPSSAAQSLPAAIAA---LPSEAFSAPRAAACR-ANASAAPRAAIAAASAPHAASP 173

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:pfam17823  174 APRTAASSTTAASSTTAASSAPTTAASSAPATL-TPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAA 252

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   725 VKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAK---SPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDI 801
Cdd:pfam17823  253 LATLAAAAGTVASAAGTINMGDPHARRLSPAKhmpSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTL 332

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811   802 KPP-----------------AEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKhPTDIRPPEQVKSPA 861
Cdd:pfam17823  333 EPNtpksvastnlavvtttkAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAG-PGILLAPEQVATEA 408
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 557-709 4.72e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 50.63  E-value: 4.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  557 AKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAkSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK 636
Cdd:PRK07994  369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS 447

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  637 SPATVKSPGEA-KSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKsPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PRK07994  448 RARPVNSALERlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAEA 520
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 591-940 4.85e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.75  E-value: 4.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  591 GEAKSPSEAKSPAEAKSPAEAKSPAE-AKSPAEAKSPAEAKSPAEAKSPATvKSPGEAKSPSEAKSPAEAKSPAEAKSPA 669
Cdd:PRK07764  389 GGAGAPAAAAPSAAAAAPAAAPAPAAaAPAAAAAPAPAAAPQPAPAPAPAP-APPSPAGNAPAGGAPSPPPAAAPSAQPA 467

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  670 EAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE----------------VKSPGEAKSPAAV-------- 725
Cdd:PRK07764  468 PAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAtlrerwpeilaavpkrSRKTWAILLPEATvlgvrgdt 547

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  726 -----KSPAEAKSPAAVKSPG----------------EAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSP 784
Cdd:PRK07764  548 lvlgfSTGGLARRFASPGNAEvlvtalaeelggdwqvEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP 627

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  785 AEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEK 864
Cdd:PRK07764  628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811  865 AKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETP 940
Cdd:PRK07764  708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 681-806 5.49e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.48  E-value: 5.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  681 GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKS-PAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAkspA 759
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV---A 446

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 124286811  760 EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAE 806
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 451-701 6.98e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 6.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  451 ETVIVEGQTEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPeketksrvkeEAKSPGEAKSP 530
Cdd:PRK07764  567 AEVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPA----------APAPAGAAAAP 636

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  531 GEAKSPAEAKSPGEAKSPGEAKSPGEAKSPaePKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE 610
Cdd:PRK07764  637 AEASAAPAPGVAAPEHHPKHVAVPDASDGG--DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPATvksPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE--AKSPAE 688
Cdd:PRK07764  715 DDPAAQPPQAAQGASAPSPAADDPVPLPPE---PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEemAEDDAP 791

                         250
                  ....*....|...
gi 124286811  689 PKSPAEAKSPAEV 701
Cdd:PRK07764  792 SMDDEDRRDAEEV 804
motB PRK05996
MotB family protein;
502-730 7.76e-06

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 49.70  E-value: 7.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPaeakspgeakSPGEAKSPGEAKSPAEPKSPAepkspAEAKSPAEP 581
Cdd:PRK05996   86 PVDGAEGEQKPGKSKFEEDQRVEGSSAVTGDDTTR----------TSGDQTNYSEADLFRNPYAVL-----AEIAQEVGQ 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  582 KSPATVKSPGEAKS--PSEAKSPAEA----------KSPAEAKSPAEAKSPAEAKSPAEAKsPAEAKSPATVKSPGEAKS 649
Cdd:PRK05996  151 QANVSAKGDGGAAQsgPATGADGGEAyrdpfdpdfwSKQVEVTTAGDLLPPGQAREQAQGA-KSATAAPATVPQAAPLPQ 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  650 PSEAKSPAEAKSPAEAKSPAEAKSPAEvkspGEAKSPAEPKSPAEAKSPAEvkspAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK05996  230 AQPKKAATEEELIADAKKAATGEPAAN----AAKAAKPEPMPDDQQKEAEQ----LQAAIAQAIGGVAGKLAEGVTVTPV 301


                  .
gi 124286811  730 E 730
Cdd:PRK05996  302 E 302
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 599-766 8.37e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 8.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  599 AKSPAEAkSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPP-----PASAPQQAPAVPLPETTSQLLAARQQLQR 431

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  679 SPGEAKSPaePKSPAEAKSPAEVKSPAE---AKSPAEVKSPGEAKSPAAvkSPAEAKSPAAVKSPGEAKsPGEAKSPAEA 755
Cdd:PRK07994  432 AQGATKAK--KSEPAAASRARPVNSALErlaSVRPAPSALEKAPAKKEA--YRWKATNPVEVKKEPVAT-PKALKKALEH 506

                         170
                  ....*....|..
gi 124286811  756 -KSPAEAKSPIE 766
Cdd:PRK07994  507 eKTPELAAKLAA 518
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 551-706 8.66e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 8.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  551 AKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPatvksPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK 630
Cdd:PRK07994  369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPP-----PASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811  631 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAE 706
Cdd:PRK07994  444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 533-700 8.96e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 8.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  533 AKSPAEAKSPGEAkSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPkSPATVKSPGEAKSPSEAKSPAEAKSPAEAK 612
Cdd:PRK07994  358 AFHPAAPLPEPEV-PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGA 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  613 SPAEAKSPAEAKSPAEAKSPAEakspaTVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKsPGEAKSPAEP-KS 691
Cdd:PRK07994  436 TKAKKSEPAAASRARPVNSALE-----RLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHeKT 509


                  ....*....
gi 124286811  692 PAEAKSPAE 700
Cdd:PRK07994  510 PELAAKLAA 518
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 563-721 9.35e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 9.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  563 PKSP-AEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATV 641
Cdd:PRK07994  361 PAAPlPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  642 KSPGEAKSPSEAKSPAEA-KSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKsPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK07994  441 SEPAAASRARPVNSALERlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAE 519


                  .
gi 124286811  721 S 721
Cdd:PRK07994  520 A 520
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 517-760 9.45e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 49.99  E-value: 9.45e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   517 VKEEAKSPGEaKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEpkSPAEAKSPAEPKSPATVKSPGEAKSP 596
Cdd:TIGR00927  634 DVAEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGE--IPAERKGEQEGEGEIEAKEADHKGET 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   597 SEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE 676
Cdd:TIGR00927  711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   677 VKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAK 756
Cdd:TIGR00927  791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEE 870


                   ....
gi 124286811   757 SPAE 760
Cdd:TIGR00927  871 EEEE 874
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 599-714 1.05e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 49.03  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  599 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK09510  139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 124286811  679 SPGEAKSPAEpKSPAEAKSPAEVKSPAEAKSPAEVK 714
Cdd:PRK09510  219 AAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 657-780 1.06e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 1.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  657 AEAKSPAEAKSPAEAKSPAEVKSP-GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPA 735
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPvAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 124286811  736 AVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEG 780
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 514-676 1.08e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.48  E-value: 1.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  514 KSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAE-PKSPAEAKSPAEPKSPATVKSPGE 592
Cdd:PRK07994  362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPeTTSQLLAARQQLQRAQGATKAKKS 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  593 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkSPAEAKSPATVKSPGEAKsPSEAKSPAEAKSPAE--AKSPAE 670
Cdd:PRK07994  442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVAT-PKALKKALEHEKTPElaAKLAAE 519


                  ....*.
gi 124286811  671 AKSPAE 676
Cdd:PRK07994  520 AIERDP 525
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 609-726 1.19e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 49.03  E-value: 1.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:PRK09510  137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 124286811  689 PKSPAEAKSPAEvKSPAEAKSPAEVKSPGEAKSPAAVK 726
Cdd:PRK09510  217 KKAAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 506-634 1.42e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.94  E-value: 1.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  506 AASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPA-EAKSPAEPKSP 584
Cdd:PRK14951  363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAaAAPAAAPAAAP 442

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 124286811  585 ATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE 634
Cdd:PRK14951  443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 522-689 1.42e-05

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 48.82  E-value: 1.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  522 KSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAkSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSpgEAKSPSEAKS 601
Cdd:PRK13108  280 EAPGALRGSEYVVDEALEREPAELAAAAVASAASAV-GPVGPGEPNQPDDVAEAVKAEVAEVTDEVAA--ESVVQVADRD 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  602 PAEAKSPAEAKSPA---EAKSPAEAKSPAEAKSPAEAKSPAtvksPGEAKS-PSEAKSPAEAKSPAEAKSPAEAKSPAEV 677
Cdd:PRK13108  357 GESTPAVEETSEADierEQPGDLAGQAPAAHQVDAEAASAA----PEEPAAlASEAHDETEPEVPEKAAPIPDPAKPDEL 432

                         170
                  ....*....|..
gi 124286811  678 KSPGEAKSPAEP 689
Cdd:PRK13108  433 AVAGPGDDPAEP 444
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
88-349 1.83e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.14  E-value: 1.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   88 AAVAARSEKEQLQALNDRFAGYIDKVRQLEAhnrsLEGEAAALRQQQAGRAAmgELYEREVREMRGAVLRLGAARGQLRL 167
Cdd:COG4913   243 ALEDAREQIELLEPIRELAERYAAARERLAE----LEYLRAALRLWFAQRRL--ELLEAELEELRAELARLEAELERLEA 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  168 EQEHLLEDIAHVRQRLdeearqreeaeaaaralarfaQEAEAARVE-LQKKAQALQEEcgylRRHHQEEVGELLGQIQGC 246
Cdd:COG4913   317 RLDALREELDELEAQI---------------------RGNGGDRLEqLEREIERLERE----LEERERRRARLEALLAAL 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  247 GAAQAQAQaeardalkcdvtSALREIRAQLeghavqstlqseewfRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQAR 326
Cdd:COG4913   372 GLPLPASA------------EEFAALRAEA---------------AALLEALEEELEALEEALAEAEAALRDLRRELREL 424

                         250       260
                  ....*....|....*....|....*..
gi 124286811  327 TTELEALKSTK----ESLERQRSELED 349
Cdd:COG4913   425 EAEIASLERRKsnipARLLALRDALAE 451
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 556-641 1.86e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.12  E-value: 1.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  556 EAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEA 635
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....*.
gi 124286811  636 KSPATV 641
Cdd:PRK12270  114 EDEVTP 119
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
704-899 1.96e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  704 PAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAeAKSPAEAKSPIEVKSPEKAKTPVKEGAKS 783
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPAPAPA 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  784 PAEAKSPeKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPvqeeAKHPTDIRPPEQVKSPAKE 863
Cdd:PRK12323  454 PAAAPAA-AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP----APAQPDAAPAGWVAESIPD 528

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 124286811  864 KAKSPEKEEAKTS--EKVAPKKEEVKSPVKEEVKAKEP 899
Cdd:PRK12323  529 PATADPDDAFETLapAPAAAPAPRAAAATEPVVAPRPP 566
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
88-373 2.07e-05

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 48.81  E-value: 2.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   88 AAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRL 167
Cdd:COG4995   176 ALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAA 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  168 EQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCG 247
Cdd:COG4995   256 ALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLAL 335

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  248 AAQAQAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVR-LDRLSEAAKVNTDAMRSAQEEITEYRRQLQAR 326
Cdd:COG4995   336 LLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALlLLLLALLAALLLLAAALLALAAAQLLRLLLAA 415

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 124286811  327 TTELEALKSTKESLERQRSELE-----DRHQADIASYQDAIQQLDSELRNTK 373
Cdd:COG4995   416 LALLLALAAYAAARLALLALIEyiilpDRLYAFVQLYQLLIAPIEAELPGIK 467
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 605-684 2.24e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 48.73  E-value: 2.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  605 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
694-881 2.28e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 2.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  694 EAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGeAKSPAEAKSPAEAKSPIEVKSPEKA 773
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  774 KTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAkSPEKAKSPVKEGAKPPEKAKP-LDVKSPEAQTP-----VQEEAKH 847
Cdd:PRK12323  450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA-APAAAPAPADDDPPPWEELPPeFASPAPAQPDAapagwVAESIPD 528

                         170       180       190
                  ....*....|....*....|....*....|....
gi 124286811  848 PTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAP 881
Cdd:PRK12323  529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 593-746 2.30e-05

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 48.33  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  593 AKSPSEAKSPAeakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPaeaksPAEAK 672
Cdd:cd23959   100 AMAPDESLGPF---RAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPL-----PAAAA 171

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  673 SPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVkSPAEAKSPAAVKSPGEAKSP 746
Cdd:cd23959   172 AQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAA-PASAASFPAAPVANGEAATP 244
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 551-762 2.32e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 48.41  E-value: 2.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  551 AKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK 630
Cdd:PRK05035  473 HKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAA 552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  631 SPAEAKSPATVKSPGEAKSPSEA--KSPAEAKSPAEAKSPAEAKSPAEVkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAK 708
Cdd:PRK05035  553 AIARAKAKKAAQQAANAEAEEEVdpKKAAVAAAIARAKAKKAAQQAASA-EPEEQVAEVDPKKAAVAAAIARAKAKKAEQ 631

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811  709 SPAEVKSPGEAKSPAAVK---SPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK05035  632 QANAEPEEPVDPRKAAVAaaiARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAK 688
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 593-708 2.36e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 47.88  E-value: 2.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  593 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAK 672
Cdd:PRK09510  139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 124286811  673 SPAEVKSpGEAKSPAEPKSPAEAKSPAEVKSPAEAK 708
Cdd:PRK09510  219 AAAEAKA-AAAKAAAEAKAAAEKAAAAKAAEKAAAA 253
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
604-893 2.37e-05

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 48.05  E-value: 2.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  604 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE-AKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE 682
Cdd:PRK07735    3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEiSKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  683 AKSPAEPKSPAEAKSPAEvkspAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSpgeakspgEAKSPAEAKSPAEAK 762
Cdd:PRK07735   83 EEVTEEEKAKAKAKAAAA----AKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAA--------KAKAAALAKQKREGT 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  763 SPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLdvkspeAQTPVQ 842
Cdd:PRK07735  151 EEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAAL------AKQKAS 224

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124286811  843 EEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEE 893
Cdd:PRK07735  225 QGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEEPSVNQ 275
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 531-686 2.50e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 48.63  E-value: 2.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  531 GEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE 610
Cdd:PHA03307  769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPA 848

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811  611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAeAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PHA03307  849 RSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA-PPAGAPAPRPRPAPRVKLGPMPPGGPDP 923
dnaA PRK14086
chromosomal replication initiator protein DnaA;
501-710 2.55e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 48.28  E-value: 2.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  501 PPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKS----PGEAKSPAEPKSPAEPKSPAEAK 576
Cdd:PRK14086   90 PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTArpayPAYQQRPEPGAWPRAADDYGWQQ 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  577 SPAEPKSPATVKSPGEAKSPSE--AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK 654
Cdd:PRK14086  170 QRLGFPPRAPYASPASYAPEQErdREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERD 249

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  655 SPAEAKSPAEAKSPaEAKSPAEVKSPGEAKSPAEPKSP------------AEAKSPAEVKSPAEAKSP 710
Cdd:PRK14086  250 DAPVVPIRPSAPGP-LAAQPAPAPGPGEPTARLNPKYTfdtfvigasnrfAHAAAVAVAEAPAKAYNP 316
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 615-877 2.68e-05

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 48.71  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPgEAKSPAEPKSPAE 694
Cdd:PLN03237 1175 AEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKP-KGRAGAKKKAPAA 1253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  695 AKSPAEVKSPAEAKSPAEVKSPGEAKSPAAvKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPE--- 771
Cdd:PLN03237 1254 AKEKEEEDEILDLKDRLAAYNLDSAPAQSA-KMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERlkk 1332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  772 ----KAKTPVKEGAKSPAEAKSPEKAKSPVKED----IKPPAEAKSPEKAKSPVKEGAKPPEK---------AKPLDVKS 834
Cdd:PLN03237 1333 kggrKPAAANKKAAKPPAAAKKRGPATVQSGQKllteMLKPAEAIGISPEKKVRKMRASPFNKksgsvlgraATNKETES 1412

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 124286811  835 PEAQTPVQEEAKHPTDI----RPPEQVKSPAKEKAKSPEKEEAKTSE 877
Cdd:PLN03237 1413 SENVSGSSSSEKDEIDVsakpRPQRANRKQTTYVLSDSESESADDSD 1459
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 592-736 3.31e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 47.49  E-value: 3.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  592 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 671
Cdd:PRK09510  116 QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  672 KSPAEVKSPGEAKSPAepKSPAEAKSPAEVKSPAeAKSPAEVKSPGEAKSPAAVKSPAEAKSPAA 736
Cdd:PRK09510  196 AAEAKKKAEAEAKKKA--AAEAKKKAAAEAKAAA-AKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 499-678 3.39e-05

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 48.32  E-value: 3.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSRVKEEAKSPgeakspgeakSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PLN03237 1276 DSAPAQSAKMEETVKAVPARRAAARK----------KPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKA 1345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPksPATVKSPGEAKSPSEAKSPAEAKSPAEAK-SPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPG--EAKSPSEAKS 655
Cdd:PLN03237 1346 AKP--PAAAKKRGPATVQSGQKLLTEMLKPAEAIgISPEKKVRKMRASPFNKKSGSVLGRAATNKETEssENVSGSSSSE 1423

                         170       180
                  ....*....|....*....|...
gi 124286811  656 PAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PLN03237 1424 KDEIDVSAKPRPQRANRKQTTYV 1446
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 592-814 3.41e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 48.02  E-value: 3.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  592 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP--AEAKSPA 669
Cdd:PRK05035  478 EARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAavAAAIARA 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  670 EAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVkspgEAKSPAAVKSPAEAKSPAAVKSPGEAKspgea 749
Cdd:PRK05035  558 KAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASA----EPEEQVAEVDPKKAAVAAAIARAKAKK----- 628

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  750 kspAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAK 814
Cdd:PRK05035  629 ---AEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAK 690
PHA03378 PHA03378
EBNA-3B; Provisional
 556-944 3.41e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 48.14  E-value: 3.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  556 EAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKS-PSEAKSPAEAKSPAEAKSPaeaksPAEAKSPAEAKSPAE 634
Cdd:PHA03378  549 ESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSaPSYAQTPWPVPHPSQTPEP-----PTTQSHIPETSAPRQ 623

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  635 AKSPATVKSPGEAKSPSEAKSPAEAKSPAEakSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevK 714
Cdd:PHA03378  624 WPMPLRPIPMRPLRMQPITFNVLVFPTPHQ--PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPP--R 699

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  715 SPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE--AKSPIEVKSPEKAKTPVKEGAKSPAeakspek 792
Cdd:PHA03378  700 APTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARppAAAPGRARPPAAAPGRARPPAAAPG------- 772

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  793 AKSPVKEDIKPPAEAKSPEKAKSPvkegaKPPEKAKPLDVK-SPEAQTPVQEEAKHPTDIRPPEQVKS--PAKEKAKSPE 869
Cdd:PHA03378  773 APTPQPPPQAPPAPQQRPRGAPTP-----QPPPQAGPTSMQlMPRAAPGQQGPTKQILRQLLTGGVKRgrPSLKKPAALE 847

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  870 KEEA---KTSEKVAPKKEEVKSPV--KEEVKAKEPPKKVEEEKTL--------PTPKTEAKESKKDEAPKEAPKPKVEEK 936
Cdd:PHA03378  848 RQAAagpTPSPGSGTSDKIVQAPVfyPPVLQPIQVMRQLGSVRAAaastvtqaPTEYTGERRGVGPMHPTDIPPSKRAKT 927


                  ....*...
gi 124286811  937 KETPTEKP 944
Cdd:PHA03378  928 DAYVESQP 935
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 598-738 3.74e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 47.49  E-value: 3.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  598 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKspAEV 677
Cdd:PRK09510  116 QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAE--AAA 193

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124286811  678 KSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEvKSPGEAKSPAAVKSPAEAKSPAAVK 738
Cdd:PRK09510  194 KAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 556-829 3.76e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 47.61  E-value: 3.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  556 EAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKspAEAKSPAEAKSPAEAKSPAEA 635
Cdd:PLN03209  308 ETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPK--AVVPRPLSPYTAYEDLKPPTS 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  636 KSPATVKSPGEAKSPSEAKS-PAEAKSPAeakSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKspAEVKSPAEAKSPAEVK 714
Cdd:PLN03209  386 PIPTPPSSSPASSKSVDAVAkPAEPDVVP---SPGSASNVPEVEPAQVEAKKTRPLSPYARY--EDLKPPTSPSPTAPTG 460

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  715 SPGEAKSPAAVKSPAEAKSPAAVkspGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAK 794
Cdd:PLN03209  461 VSPSVSSTSSVPAVPDTAPATAA---TDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAP 537

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 124286811  795 SPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKP 829
Cdd:PLN03209  538 PTALADEQHHAQPKPRPLSPYTMYEDLKPPTSPTP 572
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 647-762 3.78e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 47.49  E-value: 3.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  647 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVK 726
Cdd:PRK09510  139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 124286811  727 SPAEAKSPAAvKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK09510  219 AAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
706-903 4.21e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 4.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  706 EAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAeAKSPIEVKSPEKAKTPVKEGAKSPA 785
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  786 EAKSPekAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPeaqtPVQEEAKHPTDIRPPEQVKSPAKEKA 865
Cdd:PRK12323  450 PAPAP--AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP----PWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 124286811  866 KSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKV 903
Cdd:PRK12323  524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 723-1089 4.85e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.77  E-value: 4.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  723 AAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEG-AKSPAEAKSPEKAKSPVKEDI 801
Cdd:PRK10263  322 VAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGyPQQSQYAQPAVQYNEPLQQPV 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  802 KPPAEAKSPEKAKSP-VKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPtdiRPPEQVKSPakekaKSPEKEEAKTSEKVA 880
Cdd:PRK10263  402 QPQQPYYAPAAEQPAqQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQA---EEQQSTFAP-----QSTYQTEQTYQQPAA 473

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  881 PKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTP-----KTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEE 955
Cdd:PRK10263  474 QEPLYQQPQPVEQQPVVEPEPVVEETKPARPPlyyfeEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVP 553

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  956 AGEKKKAVAseeetPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETE-------KPKKEEMPAAPE--------- 1019
Cdd:PRK10263  554 PVEAAAAVS-----PLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEgigpqlpRPKRIRVPTRRElasygiklp 628

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811 1020 KKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGE 1089
Cdd:PRK10263  629 SQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAE 698
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 575-745 4.96e-05

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 47.28  E-value: 4.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  575 AKSPAEPKsPATVKSPGEAKSPSEAkSPAEAKSPAEAKSPAE-AKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEA 653
Cdd:PRK13108  292 VDEALERE-PAELAAAAVASAASAV-GPVGPGEPNQPDDVAEaVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEA 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  654 KSPAEAKSPAEAKSPAEAKSPAEvkspGEAKSPAEPKS-PAEAKSPAEvksPAEAKSPAEVKSPGEAKSPAAVKSPAEAK 732
Cdd:PRK13108  370 DIEREQPGDLAGQAPAAHQVDAE----AASAAPEEPAAlASEAHDETE---PEVPEKAAPIPDPAKPDELAVAGPGDDPA 442

                         170
                  ....*....|...
gi 124286811  733 SPAAVKSPGEAKS 745
Cdd:PRK13108  443 EPDGIRRQDDFSS 455
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 655-1018 5.04e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 5.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PHA03307   21 FPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASP 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  735 AAVKSPGEAKSPGEAKSPAEAkSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEkak 814
Cdd:PHA03307  101 AREGSPTPPGPSSPDPPPPTP-PPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL--- 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  815 spvkegAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEV 894
Cdd:PHA03307  177 ------SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWG 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  895 KAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLG 974
Cdd:PHA03307  251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTS 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 124286811  975 VKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAP 1018
Cdd:PHA03307  331 SSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA 374
PTZ00372 PTZ00372
endonuclease 4-like protein; Provisional
 1001-1083 5.23e-05

endonuclease 4-like protein; Provisional


Pssm-ID: 240388  Cd Length: 413  Bit Score: 47.02  E-value: 5.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811 1001 SKPTETEKPKKEEMPAAPE--KKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKssstDQKESQPPE 1078
Cdd:PTZ00372   34 LSKEILSTFSEEENKVATTstKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK----KTKKKPPKP 109


                  ....*
gi 124286811 1079 KTTED 1083
Cdd:PTZ00372  110 KPNED 114
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
96-388 5.27e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.60  E-value: 5.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   96 KEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVrEMRGAVLRLGAARGQL-RLEQEHllE 174
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI-DVASAEREIAELEAELeRLDASS--D 685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  175 DIAHVRQRLDeearqreeaeaaaralarfaqEAEAARVELQKKAQALQEECGYLrrhhQEEVGELLGQIQGCGAAQAQAQ 254
Cdd:COG4913   686 DLAALEEQLE---------------------ELEAELEELEEELDELKGEIGRL----EKELEQAEEELDELQDRLEAAE 740

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  255 AEARDALkcdvTSALREIRAQLEGHAVQSTLQseEWFRVRLDRLSEAAKVNTDAMRSAQ------------------EEI 316
Cdd:COG4913   741 DLARLEL----RALLEERFAAALGDAVERELR--ENLEERIDALRARLNRAEEELERAMrafnrewpaetadldadlESL 814

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  317 TEYRRQLQA-RTTELEALkstKESLERQRSELEDRHQADIASY--------QDAIQQLDSELRNT------------KWE 375
Cdd:COG4913   815 PEYLALLDRlEEDGLPEY---EERFKELLNENSIEFVADLLSKlrraireiKERIDPLNDSLKRIpfgpgrylrleaRPR 891

                         330
                  ....*....|...
gi 124286811  376 MAAQLREYQDLLN 388
Cdd:COG4913   892 PDPEVREFRQELR 904
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 573-764 5.39e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  573 AEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSP--AEAKSPATVKSPGEAKSP 650
Cdd:PHA03307  730 ARTVAPLVRYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPvrAEAAFRRPGRLRRSGPAA 809

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  651 SEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKS-PAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PHA03307  810 DAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSsESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPP 889

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 124286811  730 EAKSPAAvKSPGEAKSPGEAKSPAEAKSPAEAKSP 764
Cdd:PHA03307  890 KAAAAAP-PAGAPAPRPRPAPRVKLGPMPPGGPDP 923
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 707-827 5.42e-05

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 47.03  E-value: 5.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  707 AKSPAEVKSPGEAKSPAAVKS-PAEAKSPAAVKSPGEAKSPGEAKSpaEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPA 785
Cdd:PHA03269   20 ANLNTNIPIPELHTSAATQKPdPAPAPHQAASRAPDPAVAPTSAAS--RKPDLAQAPTPAASEKFDPAPAPHQAASRAPD 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 124286811  786 EAKSPEKAKSPVKEDIKPPAEA--KSPEKAKSPVKEGAKPPEKA 827
Cdd:PHA03269   98 PAVAPQLAAAPKPDAAEAFTSAaqAHEAPADAGTSAASKKPDPA 141
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
458-657 5.58e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.18  E-value: 5.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  458 QTEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPgeakSPA 537
Cdd:PRK12323  384 QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAA----APA 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  538 EAKSPGEAKSPGEAKSPGEAKSPAEPksPAEPKSPAEAKSPAEpKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:PRK12323  460 AAARPAAAGPRPVAAAAAAAPARAAP--AAAPAPADDDPPPWE-ELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 124286811  618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPA 657
Cdd:PRK12323  537 AFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 557-727 5.64e-05

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 46.90  E-value: 5.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  557 AKSPAEPKsPAEPKSPAEAkSPAEPKSPAtvkSPGEAKSPSE-AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEA 635
Cdd:PRK13108  292 VDEALERE-PAELAAAAVA-SAASAVGPV---GPGEPNQPDDvAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEET 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  636 KSPATVKspgEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKS 715
Cdd:PRK13108  367 SEADIER---EQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAE 443

                         170
                  ....*....|..
gi 124286811  716 PGEAKSPAAVKS 727
Cdd:PRK13108  444 PDGIRRQDDFSS 455
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 543-698 5.77e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 5.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  543 GEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE 622
Cdd:PHA03307  769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPA 848

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811  623 AKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAeAKSPAEVKSPGEAKSPAEPKSPAEAKSP 698
Cdd:PHA03307  849 RSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA-PPAGAPAPRPRPAPRVKLGPMPPGGPDP 923
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 671-750 5.92e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.19  E-value: 5.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  671 AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
512-601 5.95e-05

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 46.76  E-value: 5.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  512 ETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPG 591
Cdd:PRK09537   88 EDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPK 167

                          90
                  ....*....|
gi 124286811  592 EAKSPSEAKS 601
Cdd:PRK09537  168 DKISLNSEKP 177
PHA03378 PHA03378
EBNA-3B; Provisional
 548-824 6.28e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 47.37  E-value: 6.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  548 PGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA 627
Cdd:PHA03378  673 PYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  628 EAKSPAEAKSPAtvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAevKSPAEA 707
Cdd:PHA03378  753 RARPPAAAPGRA---RPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPT--KQILRQ 827

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  708 KSPAEVKSpgeaKSPAAVKSPAEAKSPAAVKSPgeakSPGEAKSPAEAKSPA---EAKSPIEVKSPEKAKTPVKEGA--K 782
Cdd:PHA03378  828 LLTGGVKR----GRPSLKKPAALERQAAAGPTP----SPGSGTSDKIVQAPVfypPVLQPIQVMRQLGSVRAAAASTvtQ 899

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 124286811  783 SPAEAKSPEKAKSPVK-EDIKPPAEAKSPEKAKSPVKEGAKPP 824
Cdd:PHA03378  900 APTEYTGERRGVGPMHpTDIPPSKRAKTDAYVESQPPHGGQSH 942
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 567-684 6.30e-05

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 46.72  E-value: 6.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  567 AEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGE 646
Cdd:PRK09510  137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 124286811  647 AKSPSEAKSPAeAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK09510  217 KKAAAEAKAAA-AKAAAEAKAAAEKAAAAKAAEKAAAA 253
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 87-381 6.53e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 6.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811    87 VAAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRqqqagrAAMGELyEREVREMRGAVLRLGAargqlr 166
Cdd:TIGR02168  229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR------LEVSEL-EEEIEELQKELYALAN------ 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   167 lEQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQiqgc 246
Cdd:TIGR02168  296 -EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL---- 370

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   247 gAAQAQAQAEARDALKCDVTSALREIRA------QLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYR 320
Cdd:TIGR02168  371 -ESRLEELEEQLETLRSKVAQLELQIASlnneieRLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811   321 RQLQARTTELEA-LKSTKESLERQRSEL------EDRHQADIASYQDAIQQLDSELRNTKWEMAAQLR 381
Cdd:TIGR02168  450 EELQEELERLEEaLEELREELEEAEQALdaaereLAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 584-698 6.86e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.86  E-value: 6.86e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  584 PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAksPATVKSPGEAKSPSEAKSPAEAKSPA 663
Cdd:PRK14954  382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ--PPVARSAPLPPSPQASAPRNVASGKP 459

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 124286811  664 EAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSP 698
Cdd:PRK14954  460 GVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494
PHA03247 PHA03247
large tegument protein UL36; Provisional
 500-734 7.28e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 7.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEKE-TKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAkspgeakSPAEPKSPaePKSPAEAKSP 578
Cdd:PHA03247 2770 APPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA-------SPAGPLPP--PTSAQPTAPP 2840

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKS-PAEAKSPAEAKSPatvksPGEAKSPSEAKSPA 657
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLArPAVSRSTESFALP-----PDQPERPPQPQAPP 2915

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  658 EAKSPAEAKSPAEAKSPAEvkSPGEAKSPAEPKSPAEAKSPAEVKSPAE---AKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPP--PPPRPQPPLAPTTDPAGAGEPSGAVPQPwlgALVPGRVAVPRFRVPQPAPSREAPASST 2993
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 760-1013 7.29e-05

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 46.96  E-value: 7.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  760 EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQT 839
Cdd:PTZ00108 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDD 1228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  840 PVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKvAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKES 919
Cdd:PTZ00108 1229 EEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSK-EGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTK 1307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  920 KKDEAPKEaPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEakpkektettkteaEDTKAKE 999
Cdd:PTZ00108 1308 KKVKKRLE-GSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSS--------------EDDDDSE 1372

                         250
                  ....*....|....
gi 124286811 1000 PSKPTETEKPKKEE 1013
Cdd:PTZ00108 1373 VDDSEDEDDEDDED 1386
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
559-637 9.09e-05

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 46.37  E-value: 9.09e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  559 SPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKS 637
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKDKISLNSEKP 177
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 93-371 9.16e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.59  E-value: 9.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811    93 RSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHL 172
Cdd:TIGR02168  750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   173 LEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEEcgylRRHHQEEVGELLGQIQgcgaaqaQ 252
Cdd:TIGR02168  830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE----RASLEEALALLRSELE-------E 898

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   253 AQAEARDALKcdVTSALREIRAQLEGHAVQSTLQSEEwFRVRLD----RLSEAAKVNTDAMRSAQEEITEYRRQLQARTT 328
Cdd:TIGR02168  899 LSEELRELES--KRSELRRELEELREKLAQLELRLEG-LEVRIDnlqeRLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811   329 EL---------------EALKSTKESLERQRSELEDRHQAdIASYQDAIQQLDSELRN 371
Cdd:TIGR02168  976 RLenkikelgpvnlaaiEEYEELKERYDFLTAQKEDLTEA-KETLEEAIEEIDREARE 1032
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 502-709 1.02e-04

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 46.48  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSpgEAKSPAEPKSPAEPKSP--------A 573
Cdd:PRK05035  480 RAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQAR--ARQAEKQAAAAADPKKAavaaaiarA 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  574 EAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAEAKSPAEAKSPAEAKSPATVKSPGEAKS-PSE 652
Cdd:PRK05035  558 KAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASA-EPEEQVAEVDPKKAAVAAAIARAKAKKAEQQaNAE 636

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  653 AKSPAEAKSPAEAK--SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PRK05035  637 PEEPVDPRKAAVAAaiARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQQ 695
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 579-672 1.07e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKsPAEAKSPATvkspgeakSPSEAKSPAE 658
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-PAAAAAAAA--------APAAPPAAAA 104

                          90
                  ....*....|....
gi 124286811  659 AKSPAEAKSPAEAK 672
Cdd:PRK12270  105 AAAPAAAAVEDEVT 118
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 664-907 1.16e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 46.58  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  664 EAKSPAEAKSPaEVKSPGEAKSPAEPKSPAEAKSpaEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEA 743
Cdd:PTZ00108 1148 EEKEIAKEQRL-KSKTKGKASKLRKPKLKKKEKK--KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSD 1224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKP 823
Cdd:PTZ00108 1225 QEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSS 1304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  824 PEKAKpldVKSPEAQTPVQEEAKHPTDIRPPEQVKSpaKEKAKSPEKEEAkTSEKVAPKKEEVKSPVKEEvKAKEPPKKV 903
Cdd:PTZ00108 1305 PTKKK---VKKRLEGSLAALKKKKKSEKKTARKKKS--KTRVKQASASQS-SRLLRRPRKKKSDSSSEDD-DDSEVDDSE 1377


                  ....
gi 124286811  904 EEEK 907
Cdd:PTZ00108 1378 DEDD 1381
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 525-680 1.16e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.32  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  525 GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAE 604
Cdd:PHA03307  769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPA 848

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811  605 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPsEAKSPAEAKSPAEAKSPAEAKSPAEVKSP 680
Cdd:PHA03307  849 RSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA-APPAGAPAPRPRPAPRVKLGPMPPGGPDP 923
PHA03247 PHA03247
large tegument protein UL36; Provisional
 583-825 1.18e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  583 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPaeaksPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAksp 662
Cdd:PHA03247  256 APPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP-----PDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEE--- 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  663 AEAKSPAEAKSPaeVKSPGEAKSPAEPKSPAEAKSPAevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGE 742
Cdd:PHA03247  328 DDEDGAMEVVSP--LPRPRQHYPLGFPKRRRPTWTPP---SSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGD 402

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  743 AKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEgAK 822
Cdd:PHA03247  403 DQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRE-RR 481


                  ...
gi 124286811  823 PPE 825
Cdd:PHA03247  482 PPE 484
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 159-402 1.22e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  159 GAARGQLRLEQEHLLEDIahvRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEEcgylRRHHQEEVGE 238
Cdd:COG4942    15 AAAQADAAAEAEAELEQL---QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE----LAALEAELAE 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  239 LLGQIQgcgaaqaqAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRvrLDRLSEAAKVNTDAMRSAQEEITE 318
Cdd:COG4942    88 LEKEIA--------ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLD--AVRRLQYLKYLAPARREQAEELRA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  319 YRRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIA 398
Cdd:COG4942   158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237


                  ....
gi 124286811  399 AYRK 402
Cdd:COG4942   238 AAAE 241
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 535-697 1.22e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  535 SPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPatvksPGEAKSPSEAKSPAEAKSPAEAKSP 614
Cdd:PRK07994  365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVP-----LPETTSQLLAARQQLQRAQGATKAK 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAkSPAEAKSPAEAKSPAEAKsPAEVKSPGEAKSPAEPKSPAE 694
Cdd:PRK07994  440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLA 517


                  ...
gi 124286811  695 AKS 697
Cdd:PRK07994  518 AEA 520
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 534-618 1.26e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  534 KSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAeakSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKS 613
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA---AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....*
gi 124286811  614 PAEAK 618
Cdd:PRK12270  114 EDEVT 118
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 659-738 1.26e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  659 AKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVK 738
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PHA03247 PHA03247
large tegument protein UL36; Provisional
 539-745 1.27e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  539 AKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPaepksPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAK 618
Cdd:PHA03247  254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP-----PDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEED 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  619 SPAEAKSPAEAKSPAEAKSPATVK----------------SPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE 682
Cdd:PHA03247  329 DEDGAMEVVSPLPRPRQHYPLGFPkrrrptwtppssledlSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPA 408

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 124286811  683 AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKS 745
Cdd:PHA03247  409 APVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATR 471
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 562-729 1.33e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 46.26  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  562 EPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSP-SEAKSPAEAKSPAEAKSPAEAKSPAeakSPAEAKSPAEAKSPAT 640
Cdd:PRK14949  630 SPKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPdASQTSASFDLDPDFELATHQSVPEA---ALASGSAPAPPPVPDP 706

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  641 VKSPgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK14949  707 YDRP-----PWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDT 781


                  ....*....
gi 124286811  721 SPAAVKSPA 729
Cdd:PRK14949  782 ELNLVLLSS 790
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 500-947 1.34e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 46.23  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEKETKSRVKE-EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PRK10263  394 NEPLQQPVQPQQPYYAPAAEqPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAA 473

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEP--KSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAeaksPATVKSPGEAKSPSEAKSP 656
Cdd:PRK10263  474 QEPlyQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPI----PEPVKEPEPIKSSLKAPSV 549

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  657 AEAkSPAEAkSPAEAKSPAEVKSPGEAKSpaepkspAEAKSPAEVKSPAEAKSPAEVKSPG---EAKSPAAVKSPAEAK- 732
Cdd:PRK10263  550 AAV-PPVEA-AAAVSPLASGVKKATLATG-------AAATVAAPVFSLANSGGPRPQVKEGigpQLPRPKRIRVPTRREl 620

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  733 SPAAVKSP----GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAK 808
Cdd:PRK10263  621 ASYGIKLPsqraAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELA 700

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  809 SPEKAKSPVKEGAKPPEKAKPL---DVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEE 885
Cdd:PRK10263  701 RQFAQTQQQRYSGEQPAGANPFsldDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQ 780

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  886 VKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKE--APKPKVEEKKETPTEKPKDS 947
Cdd:PRK10263  781 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQpvAPQPQYQQPQQPVAPQPQDT 844
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 595-760 1.47e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 1.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  595 SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP 674
Cdd:PRK07994  365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  675 AEVKSPGEAKSPAEPKSpaeakSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKsPAAVKSPGEAKSPGE--AKSP 752
Cdd:PRK07994  444 AAASRARPVNSALERLA-----SVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPElaAKLA 517


                  ....*...
gi 124286811  753 AEAKSPAE 760
Cdd:PRK07994  518 AEAIERDP 525
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 111-408 1.58e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.08  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  111 DKVRQLEAHNRSLEGEAAALRQQQAGRAamgelyEREVREMRGAVLRLGAARGQLRLEQEhLLEDIAHVRQRLDEEarqr 190
Cdd:COG1196   193 DILGELERQLEPLERQAEKAERYRELKE------ELKELEAELLLLKLRELEAELEELEA-ELEELEAELEELEAE---- 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  191 eeaeaaARALARFAQEAEAARVELQKKAQALQEEcgylRRHHQEEVGELLGQIQgcgaAQAQAQAEARDALKcDVTSALR 270
Cdd:COG1196   262 ------LAELEAELEELRLELEELELELEEAQAE----EYELLAELARLEQDIA----RLEERRRELEERLE-ELEEELA 326

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  271 EIRAQLEGHAVQSTLQSEEW---------FRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLE 341
Cdd:COG1196   327 ELEEELEELEEELEELEEELeeaeeeleeAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  342 RQRSELEDR---HQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEE 408
Cdd:COG1196   407 EAEEALLERlerLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 615-819 1.62e-04

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 45.71  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAE 694
Cdd:PRK05035  471 ARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAV 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  695 AKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAK 774
Cdd:PRK05035  551 AAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAE 630

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 124286811  775 TPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKE 819
Cdd:PRK05035  631 QQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDP 675
PRK11281 PRK11281
mechanosensitive channel MscK;
264-406 1.65e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.06  E-value: 1.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  264 DVTSALREIRAQLEGhAVQSTLQSEEwfrvRLDRLSEAAkVNTDAMRSAQEEITEYRRQLQARTTEL----EALKSTKES 339
Cdd:PRK11281   77 RQKEETEQLKQQLAQ-APAKLRQAQA----ELEALKDDN-DEETRETLSTLSLRQLESRLAQTLDQLqnaqNDLAEYNSQ 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  340 LERQRSELEdRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMA-LDIEIAAYRKLLEG 406
Cdd:PRK11281  151 LVSLQTQPE-RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAlLNAQNDLQRKSLEG 217
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
649-718 1.86e-04

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 45.22  E-value: 1.86e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  649 SPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGE 718
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 657-744 1.87e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.65  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  657 AEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAA 736
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA---AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110


                  ....*...
gi 124286811  737 VKSPGEAK 744
Cdd:PRK12270  111 AAVEDEVT 118
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 520-913 1.88e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 45.53  E-value: 1.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAkspaepkSPATVKSPGEAKSPSea 599
Cdd:pfam03154  155 ESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQG-------SPATSQPPNQTQSTA-- 225

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   600 kSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAkSPAEAKSPAEAKSPAEVKS 679
Cdd:pfam03154  226 -APHTLIQQTPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQT-GPSHMQHPVPPQPFPLTPQ 303

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   680 PGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPgEAKSPGEAKSPAEAKSPA 759
Cdd:pfam03154  304 SSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIP-QLPNPQSHKHPPHLSGPS 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   760 EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAK---SPEKAKSPVKEGAKPPEKAKPLDVKSPE 836
Cdd:pfam03154  383 PFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPpvlTQSQSLPPPAASHPPTSGLHQVPSQSPF 462

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811   837 AQTPVQEEAkhPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPK 913
Cdd:pfam03154  463 PQHPFVPGG--PPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPP 537
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 610-702 2.06e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.65  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  610 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPaevkspgeAKSPAEP 689
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA--------PPAAAAA 105

                          90
                  ....*....|...
gi 124286811  690 KSPAEAKSPAEVK 702
Cdd:PRK12270  106 AAPAAAAVEDEVT 118
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
613-682 2.31e-04

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 44.83  E-value: 2.31e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  613 SPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE 682
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 683-850 2.48e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 45.24  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  683 AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK07994  362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  763 SPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAksPVKEDikpPAEAKSPEKAKSPVKEGAKPPE-KAKPLDVKSPEAQTPV 841
Cdd:PRK07994  442 EPAAASRARPVNSALERLASVRPAPSALEKA--PAKKE---AYRWKATNPVEVKKEPVATPKAlKKALEHEKTPELAAKL 516


                  ....*....
gi 124286811  842 QEEAKHPTD 850
Cdd:PRK07994  517 AAEAIERDP 525
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 577-757 2.54e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 44.97  E-value: 2.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  577 SPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEAKSPAEAKSPAEAkSPATVKSPGEAKSPSEAKSP 656
Cdd:PRK13108  275 APKGREAPGALRGSEYVVDEALEREPAELAAAAVA-SAASAVGPVGPGEPNQPDDVAEA-VKAEVAEVTDEVAAESVVQV 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  657 AEAKSPAEAKSPAEAKSPAEVKSPGE--AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PRK13108  353 ADRDGESTPAVEETSEADIEREQPGDlaGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDEL 432

                         170       180
                  ....*....|....*....|...
gi 124286811  735 AAVKSPGEAKSPGEAKSPAEAKS 757
Cdd:PRK13108  433 AVAGPGDDPAEPDGIRRQDDFSS 455
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 753-877 2.94e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 2.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  753 AEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkediKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDV 832
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP----AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 124286811  833 KSPEAQTPV--QEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSE 877
Cdd:PRK14951  446 ALAPAPPAQaaPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 532-685 2.96e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.86  E-value: 2.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  532 EAKSPAEAKSPgeAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAK--SPA 609
Cdd:PRK07994  367 EPEVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKksEPA 444

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811  610 EAKSPAEAKSPAEA-KSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKsPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PRK07994  445 AASRARPVNSALERlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAEA 520
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 521-704 2.98e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.16  E-value: 2.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSP---S 597
Cdd:PHA03307  738 RYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASrtaS 817

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  598 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEv 677
Cdd:PHA03307  818 KRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP- 896

                         170       180
                  ....*....|....*....|....*..
gi 124286811  678 KSPGEAKSPAEPKSPAEAKSPAEVKSP 704
Cdd:PHA03307  897 PAGAPAPRPRPAPRVKLGPMPPGGPDP 923
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 683-762 2.98e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.27  E-value: 2.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  683 AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 538-662 3.06e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 44.93  E-value: 3.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAksPAEAKSPAEAKSPAEA 617
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ--PPVARSAPLPPSPQAS 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 124286811  618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP 662
Cdd:PRK14954  450 APRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 806-1033 3.38e-04

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 44.60  E-value: 3.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  806 EAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPvqeeakhpTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEE 885
Cdd:PRK05901    1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITK--------EEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATES 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  886 VKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDsTAEAKKEEAGEKKKAVAS 965
Cdd:PRK05901   73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD-DDDDDDDDLDDDDIDDDD 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  966 EEETpaklgVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRK 1033
Cdd:PRK05901  152 DDED-----DDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPVK 214
valS PRK14900
valyl-tRNA synthetase; Provisional
 694-821 3.53e-04

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 44.98  E-value: 3.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  694 EAKSPAEVKSPAEAKSPAEVKSPGEAKSP-AAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEK 772
Cdd:PRK14900  920 NEQKPTQDGPAAEAQPAQENTVVESAEKAvAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKK 999

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 124286811  773 A---KTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSpekAKSPVKEGA 821
Cdd:PRK14900 1000 ApakKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKA---AKKPARKAA 1048
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 659-816 3.64e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 3.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  659 AKSPAEAkSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEV-KSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVpPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  738 KSPgeAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkedIKPPAEAKSPEKAKSP 816
Cdd:PRK07994  437 KAK--KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPV---ATPKALKKALEHEKTP 510
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
94-370 3.83e-04

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 440263 [Multi-domain]  Cd Length: 555  Bit Score: 44.30  E-value: 3.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   94 SEKEQLQALnDRFAGYIDKVRQL-EAHN--RSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAargQLRLEQE 170
Cdd:COG0497   139 DPDAQRELL-DAFAGLEELLEEYrEAYRawRALKKELEELRADEAERARELDLLRFQLEELEAAALQPGE---EEELEEE 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  171 H--------LLEDIAHVRQRLDeearqreeaeaaaralarfaQEAEAARVELQKKAQALQEecgylRRHHQEEVGELLGQ 242
Cdd:COG0497   215 RrrlsnaekLREALQEALEALS--------------------GGEGGALDLLGQALRALER-----LAEYDPSLAELAER 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  243 IQgcgaaqaqaqaeardalkcDVTSALREIRAQLEGHAVQSTLQSEEWFRV--RLDRLSEAA-KVNTDAmrsaqEEITEY 319
Cdd:COG0497   270 LE-------------------SALIELEEAASELRRYLDSLEFDPERLEEVeeRLALLRRLArKYGVTV-----EELLAY 325

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124286811  320 RRQLQARTTELEALKSTKESLERQRSELEDRhqadiasYQDAIQQLdSELR 370
Cdd:COG0497   326 AEELRAELAELENSDERLEELEAELAEAEAE-------LLEAAEKL-SAAR 368
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 719-849 3.85e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 44.33  E-value: 3.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  719 AKSPAAVKSPaEAKSPAAVKSPGEAKSPGEAKSpaEAKSPAEAKSPIEVKSPEKAKTPvkegakSPAEAKSPEKAKSPVK 798
Cdd:PHA03269   20 ANLNTNIPIP-ELHTSAATQKPDPAPAPHQAAS--RAPDPAVAPTSAASRKPDLAQAP------TPAASEKFDPAPAPHQ 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124286811  799 EDIKPPAEAKSPEKAKSPVKEGAKPPEKAKplDVKSPEAQTPVQEEAKHPT 849
Cdd:PHA03269   91 AASRAPDPAVAPQLAAAPKPDAAEAFTSAA--QAHEAPADAGTSAASKKPD 139
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 671-796 4.97e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 43.95  E-value: 4.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  671 AKSPAEVKSPGEAKSPAEPKS-PAEAKSPAEVKSPAEAKSPAEVKS----PGEAKSPAAVKS--PAEAKSPAAVKSPGEA 743
Cdd:PHA03269   20 ANLNTNIPIPELHTSAATQKPdPAPAPHQAASRAPDPAVAPTSAASrkpdLAQAPTPAASEKfdPAPAPHQAASRAPDPA 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 124286811  744 KSPGEAKSPaeAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSP 796
Cdd:PHA03269  100 VAPQLAAAP--KPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
dnaA PRK14086
chromosomal replication initiator protein DnaA;
560-760 5.03e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 44.05  E-value: 5.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  560 PAEPKSPAEPKSPAEAKSPAEPKSPatvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAksPAEAKSPAEAKSPA 639
Cdd:PRK14086   87 TVDPSAGEPAPPPPHARRTSEPELP----RPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY--PAYQQRPEPGAWPR 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  640 TVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPaevkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEA 719
Cdd:PRK14086  161 AADDYGWQQQRLGFPPRAPYASPASYAPEQERDRE----PYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAG 236

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 124286811  720 KSPAAVKSPAEAKSPAAVKSPGEAKSPgEAKSPAEAKSPAE 760
Cdd:PRK14086  237 HVHRGGPGPPERDDAPVVPIRPSAPGP-LAAQPAPAPGPGE 276
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 561-772 5.11e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 5.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   561 AEPKSPAEpKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKS----PAEAKSPAEAKSPAEAKSPAEAKSPAEAK 636
Cdd:TIGR00927  636 AEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESegeiPAERKGEQEGEGEIEAKEADHKGETEAEE 714

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   637 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSP 716
Cdd:TIGR00927  715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGD 794

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811   717 GEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEK 772
Cdd:TIGR00927  795 EGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEK 850
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 689-768 5.17e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 5.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  689 PKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVK 768
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 635-805 5.57e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.09  E-value: 5.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  635 AKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK 714
Cdd:PRK07994  358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  715 SPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAkSPAEAKSPIEVKSPEKAkTPvKEGAKSPAEAKSPEKAK 794
Cdd:PRK07994  438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVA-TP-KALKKALEHEKTPELAA 514

                         170
                  ....*....|.
gi 124286811  795 SPVKEDIKPPA 805
Cdd:PRK07994  515 KLAAEAIERDP 525
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 741-861 5.62e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 5.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  741 GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkedIKPPAEAKSPEKAKSPVkeg 820
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV---AAPAAAAPAAAPAAAPA--- 443

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 124286811  821 AKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPA 861
Cdd:PRK14951  444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 503-686 5.73e-04

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 43.70  E-value: 5.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  503 AEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAeakSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPK 582
Cdd:cd23959    76 TASTVSDCYVGNANFYEVDMSDAFAMAPDESLGPF---RAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQ 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  583 SPatvkSPGEAKSPSEAkspaeakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP 662
Cdd:cd23959   153 LP----MFGQHPPPAKP-------LPAAAAAQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSP 221

                         170       180
                  ....*....|....*....|....
gi 124286811  663 AeAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:cd23959   222 F-AAPASAASFPAAPVANGEAATP 244
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
577-655 6.09e-04

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 43.68  E-value: 6.09e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  577 SPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKS 655
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKDKISLNSEKP 177
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
146-371 6.10e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 6.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  146 REVREMRGAVLRlgaARgqlrlEQEHLLEDI-----AHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQA 220
Cdd:COG4913   235 DDLERAHEALED---AR-----EQIELLEPIrelaeRYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELAR 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  221 LQEECGYLRRHH---QEEVGELLGQIQGCGaaqaqaqaeardalkcdvTSALREIRAQLEGHAVQSTLQSEEwfRVRLDR 297
Cdd:COG4913   307 LEAELERLEARLdalREELDELEAQIRGNG------------------GDRLEQLEREIERLERELEERERR--RARLEA 366

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  298 LSEAAKVNTDAMRsaqEEITEYRRQLQARtteLEALKSTKESLERQRSELEDRHQADiasyQDAIQQLDSELRN 371
Cdd:COG4913   367 LLAALGLPLPASA---EEFAALRAEAAAL---LEALEEELEALEEALAEAEAALRDL----RRELRELEAEIAS 430
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 584-709 6.37e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 43.56  E-value: 6.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  584 PATVKSPGEAKSPSEAKS-PAEAKSPAEAKSPAEAKSPAEAKSpaEAKSPAEAKSPATVKSPGEAKSPSEAKSpaEAKSP 662
Cdd:PHA03269   23 NTNIPIPELHTSAATQKPdPAPAPHQAASRAPDPAVAPTSAAS--RKPDLAQAPTPAASEKFDPAPAPHQAAS--RAPDP 98

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 124286811  663 AEAKSPAEAKSPaevkspgeakSPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PHA03269   99 AVAPQLAAAPKP----------DAAEAFTSAAQAHEAPADAGTSAAS 135
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
741-943 6.72e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 6.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  741 GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkediKPPAEAKSPEKAKSPVKEG 820
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR----SPAPEALAAARQASARGPG 445

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  821 AKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKeeaktsekvAPKKEEVKSPVKEEVKAKEPP 900
Cdd:PRK12323  446 GAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD---------PPPWEELPPEFASPAPAQPDA 516

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 124286811  901 KKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEK 943
Cdd:PRK12323  517 APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 623-791 6.78e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 43.70  E-value: 6.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  623 AKSPAEAkSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAEVKSPGEAKSPAEPKSPAEAKSPAEVK 702
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGA 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  703 SPAEAKSPAevkSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG----EAKSPAEAKSPAEAKSPIEVKSPEKAKTPvK 778
Cdd:PRK07994  436 TKAKKSEPA---AASRARPVNSALERLASVRPAPSALEKAPAKKEayrwKATNPVEVKKEPVATPKALKKALEHEKTP-E 511

                         170
                  ....*....|...
gi 124286811  779 EGAKSPAEAKSPE 791
Cdd:PRK07994  512 LAAKLAAEAIERD 524
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 592-725 6.88e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.82  E-value: 6.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  592 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkspAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEA 671
Cdd:PRK07764  382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAA---AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG-APSPP 457

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 124286811  672 KSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAV 725
Cdd:PRK07764  458 PAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
PHA03381 PHA03381
tegument protein VP22; Provisional
 502-662 7.26e-04

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 42.69  E-value: 7.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  502 PAEEAASPEKETKSRVKEEAKSP-GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAE 580
Cdd:PHA03381   25 FISPDASPARVSFEEPADRARRGaGQARGRSQAERRFHHYDEARADYPYYTGSSSEDERPADPRPSRRPHAQPEASGPGP 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAK 660
Cdd:PHA03381  105 ARGARGPAGSRGRGRRAESPSPRDPPNPKGA-SAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPT 183


                  ..
gi 124286811  661 SP 662
Cdd:PHA03381  184 AP 185
rne PRK10811
ribonuclease E; Reviewed
 554-737 7.50e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 43.87  E-value: 7.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  554 PGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPA-EAKSPAEAKSPAEAKSPAEAKSPAEAKSP 632
Cdd:PRK10811  850 PQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVvVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  633 --AEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSP 710
Cdd:PRK10811  930 viTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009

                         170       180
                  ....*....|....*....|....*..
gi 124286811  711 AEVKSpgEAKSPAAvKSPAEAKSPAAV 737
Cdd:PRK10811 1010 TVEHN--HATAPMT-RAPAPEYVPEAP 1033
PRK13808 PRK13808
adenylate kinase; Provisional
 555-684 7.55e-04

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 42.95  E-value: 7.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  555 GEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE--AKSP 632
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKkaAKKA 274

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 124286811  633 AEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK13808  275 AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 583-685 8.74e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 43.18  E-value: 8.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  583 SPATVKSPGEAKSPSEAKSpaEAKSPAEAKSPAEAKSPAEAKSPAEAKS----PAEAKSPATVKSPGEAKSPSEAKSPae 658
Cdd:PHA03269   33 TSAATQKPDPAPAPHQAAS--RAPDPAVAPTSAASRKPDLAQAPTPAASekfdPAPAPHQAASRAPDPAVAPQLAAAP-- 108

                          90       100
                  ....*....|....*....|....*..
gi 124286811  659 AKSPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PHA03269  109 KPDAAEAFTSAAQAHEAPADAGTSAAS 135
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 502-650 8.79e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 8.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPkSPAEPKSPAEAKSPAEP 581
Cdd:PHA03307  777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARP-PGAAARPPPARSSESSK 855

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  582 KSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAeAKSPAEAKSPAEAKSPATVKSPGEAKSP 650
Cdd:PHA03307  856 SKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA-PPAGAPAPRPRPAPRVKLGPMPPGGPDP 923
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 669-756 8.81e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 8.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  669 AEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevkSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGE 748
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA---AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110


                  ....*...
gi 124286811  749 AKSPAEAK 756
Cdd:PRK12270  111 AAVEDEVT 118
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 520-722 9.40e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 9.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSpatvKSPGEAKSPSEA 599
Cdd:PHA03307  731 RTVAPLVRYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEA----AFRRPGRLRRSG 806

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  600 KSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPaeaksPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKS 679
Cdd:PHA03307  807 PAADAASRTASKRKSRSHTPDGGSESSGPARPP-----GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 124286811  680 PGEAKSPAePKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSP 722
Cdd:PHA03307  882 RPGAAAPP-KAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDP 923
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 646-794 9.44e-04

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 42.87  E-value: 9.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  646 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKspAEVKSPAEAKSPAEVKSPGEAKSPAAV 725
Cdd:PRK09510  116 QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE--AKKKAEAEAAKKAAAEAKKKAEAEAAA 193

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  726 KSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAeakspievkspEKAKTPVKEGAKSPAEAKSPEKAK 794
Cdd:PRK09510  194 KAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA-----------AKAAAEAKAAAEKAAAAKAAEKAA 251
rne PRK10811
ribonuclease E; Reviewed
 641-816 9.84e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 43.49  E-value: 9.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  641 VKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  721 SPAAVkspAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKED 800
Cdd:PRK10811  927 QPQVI---TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003

                         170
                  ....*....|....*.
gi 124286811  801 IKPPAEAKSPEKAKSP 816
Cdd:PRK10811 1004 AQVPEATVEHNHATAP 1019
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 511-776 1.11e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 43.08  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  511 KETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPaePKSPAEPKSPAEakSPAEPKSPATVKSP 590
Cdd:NF033838  227 KTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATP--DKKENDAKSSDS--SVGEETLPSPSLKP 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  591 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE---AKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKS 667
Cdd:NF033838  303 EKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK 382

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  668 pAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEvkSPAEAKSPAevksPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG 747
Cdd:NF033838  383 -AEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE--KPAEQPQPA----PAPQPEKPAPKPEKPAEQPKAEKPADQQAEED 455

                         250       260
                  ....*....|....*....|....*....
gi 124286811  748 EAKSPAEAKSPAEAKSPIEVKSPEKAKTP 776
Cdd:NF033838  456 YARRSEEEYNRLTQQQPPKTEKPAQPSTP 484
PRK12472 PRK12472
hypothetical protein; Provisional
 553-720 1.13e-03

hypothetical protein; Provisional


Pssm-ID: 237110 [Multi-domain]  Cd Length: 508  Bit Score: 42.94  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  553 SPGEAkSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAkspseAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSP 632
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDA-----ARAADEAKTAAAAAAREAAPLKASLRKLERAKAR 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  633 AEAKSPATVKSPGEAKSpSEAKSPAEAKSPAEAKSPAEAKSPAEVkspgeAKSPAEPKSPAEAKSPAEVKSpAEAKSPAE 712
Cdd:PRK12472  237 ADAELKRADKALAAAKT-DEAKARAEERQQKAAQQAAEAATQLDT-----AKADAEAKRAAAAATKEAAKA-AAAKKAET 309


                  ....*...
gi 124286811  713 VKSPGEAK 720
Cdd:PRK12472  310 AKAATDAK 317
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 550-766 1.16e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 43.16  E-value: 1.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  550 EAKSPgEAKSPAEPKSPAEPKSPAEAKSPAEPkspatVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAeA 629
Cdd:PRK08691  376 ELQSP-SAQTAEKETAAKKPQPRPEAETAQTP-----VQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAA-G 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  630 KSPAEAKSPATVkspgeakspseakspAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PRK08691  449 TAQTSAKSIQTA---------------SEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAP 513

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811  710 PAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIE 766
Cdd:PRK08691  514 AEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSA 570
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
531-648 1.17e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 42.48  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  531 GEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP--AEPKSPATVKSPGEAKSPSEAKSPAEAKSP 608
Cdd:PRK12373  202 GKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPksADAETNAALKTPATAPKAAAKNAKAPEAQP 281

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 124286811  609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAK 648
Cdd:PRK12373  282 VSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGG 321
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
653-774 1.20e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 42.48  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  653 AKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAevksPAEAKSPAEVKSPGEAKSPAAVKSPAEAK 732
Cdd:PRK12373  204 ARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPK----SADAETNAALKTPATAPKAAAKNAKAPEA 279

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 124286811  733 SPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAK 774
Cdd:PRK12373  280 QPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGG 321
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 519-600 1.23e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.96  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  519 EEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPK---SPAEAKSPAEPKSPATVKSPGEAKS 595
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKpaaAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....*
gi 124286811  596 PSEAK 600
Cdd:PRK12270  114 EDEVT 118
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 508-737 1.26e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.61  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  508 SPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAK----SPAEPKSPAEPKSPAEAKSPAEPKS 583
Cdd:PLN03209  314 TPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKavvpRPLSPYTAYEDLKPPTSPIPTPPSS 393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  584 -PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPgeakSPSEAKSPAEAKSP 662
Cdd:PLN03209  394 sPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSP----TAPTGVSPSVSSTS 469

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  663 AEAKSPAEAksPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PLN03209  470 SVPAVPDTA--PATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542
PRK13808 PRK13808
adenylate kinase; Provisional
 694-828 1.28e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 42.18  E-value: 1.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  694 EAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKA 773
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAA 275

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  774 KTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAK 828
Cdd:PRK13808  276 KAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTK 330
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 610-734 1.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 42.62  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  610 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAksPAEVKSPGEAKSPAEP 689
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ--PPVARSAPLPPSPQAS 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 124286811  690 KSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PRK14954  450 APRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 470-653 1.46e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 42.10  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  470 EEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPG 549
Cdd:PRK09510   84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKA 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  550 EAKSPGEAKSPAEPKSPAEPKSPAEAKspaepkspATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAeAKSPAEA 629
Cdd:PRK09510  164 AAEAKKKAEAEAAKKAAAEAKKKAEAE--------AAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA-AKAAAEA 234

                         170       180
                  ....*....|....*....|....
gi 124286811  630 KSPAEAKSPATVKSPGEAKSPSEA 653
Cdd:PRK09510  235 KAAAEKAAAAKAAEKAAAAKAAAE 258
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
470-689 1.58e-03

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 42.27  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  470 EEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPG 549
Cdd:PRK07735   38 EEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTE 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  550 EAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAK--------------SPA 615
Cdd:PRK07735  118 EVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALakqkaaeagegteeVTE 197

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  616 EAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEP 689
Cdd:PRK07735  198 EEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEEP 271
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 758-948 1.75e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 42.26  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  758 PAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKakSPVkedikPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEA 837
Cdd:PTZ00441  323 PDNPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDE--SNV-----PPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEP 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  838 QTPVQEEAKHPTDIrpPEQVKSPAKEKAKSPEKEEAK---TSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKT 914
Cdd:PTZ00441  396 NIPEDSNKEVPEDV--PMEPEDDRDNNFNEPKKPENKgdgQNEPVIPKPLDNERDQSNKNKQVNPGNRHNSEDRYTRPHG 473

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 124286811  915 EAKESK-KDEAPKEAPKPKVEEKKETPTEKPKDST 948
Cdd:PTZ00441  474 RNNENRnYNNKNSDIPKHPERSEHEQPEDKKKKSS 508
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 499-814 1.75e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.76  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASpeketkSRVKEEAKSPGEAKSPgeakSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PRK10263  317 TEPVAVAAAA------TTATQSWAAPVEPVTQ----TPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQY 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPAT------VKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSE 652
Cdd:PRK10263  387 AQPAVQYNeplqqpVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQ 466

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  653 AKSPAEAKSPAEAKSPAEAKSPAEVKSPG-EAKSPAEPK----SPAEAKSPAEVKS--------PAEAKSPAEVKSPGEA 719
Cdd:PRK10263  467 TYQQPAAQEPLYQQPQPVEQQPVVEPEPVvEETKPARPPlyyfEEVEEKRAREREQlaawyqpiPEPVKEPEPIKSSLKA 546

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  720 KSPAAVkSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEkaktpVKEGAKspAEAKSPEKAKSPVKE 799
Cdd:PRK10263  547 PSVAAV-PPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQ-----VKEGIG--PQLPRPKRIRVPTRR 618

                         330       340
                  ....*....|....*....|
gi 124286811  800 D-----IKPPAEAKSPEKAK 814
Cdd:PRK10263  619 ElasygIKLPSQRAAEEKAR 638
PRK12472 PRK12472
hypothetical protein; Provisional
 571-736 1.77e-03

hypothetical protein; Provisional


Pssm-ID: 237110 [Multi-domain]  Cd Length: 508  Bit Score: 42.17  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  571 SPAEAkSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEakspaEAKSPAEAKSPAEAKSPATVKSPGEAKSP 650
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDAARAAD-----EAKTAAAAAAREAAPLKASLRKLERAKAR 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  651 SEAKSPAEAKSPAEAKSPaEAKSPAEvkspgEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAE 730
Cdd:PRK12472  237 ADAELKRADKALAAAKTD-EAKARAE-----ERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETA 310


                  ....*.
gi 124286811  731 AKSPAA 736
Cdd:PRK12472  311 KAATDA 316
PRK13808 PRK13808
adenylate kinase; Provisional
 591-716 1.78e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 41.80  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  591 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSpAEAKSPAE 670
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAK-AVKKAAKK 273

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 124286811  671 AKSPAEVKSPGEAKSPaepKSPAEAKSPAEVKSPAEAKSPAEVKSP 716
Cdd:PRK13808  274 AAKAAAKAAKGAAKAT---KGKAKAKKKAGKKAAAGSKAKATAKAP 316
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 608-825 1.88e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  608 PAEAKSPAEAKSPAEAKS-PAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PHA03307  710 LPVAGGREERVAAVRAVSlVARTVAPLVRYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPP 789

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  687 AEPKSPAEAKSPAEVKSPAE--AKSPAEVKSPGEAKSPAAVKSPAEAKSP-AAVKSPGEAKSPGEAKSPAEAKSPAEAKS 763
Cdd:PHA03307  790 VRAEAAFRRPGRLRRSGPAAdaASRTASKRKSRSHTPDGGSESSGPARPPgAAARPPPARSSESSKSKPAAAGGRARGKN 869

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124286811  764 PIEVKSPEkaktpvkEGAKSPAEAKSPEKAKSPvkediKPPAEAKSPEKAKSPVKEGAKPPE 825
Cdd:PHA03307  870 GRRRPRPP-------EPRARPGAAAPPKAAAAA-----PPAGAPAPRPRPAPRVKLGPMPPG 919
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 504-881 1.93e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 42.45  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   504 EEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSpaEPKSPAEAKSPAEPKS 583
Cdd:pfam03154   71 EEAPSPLKSAKRQREKGASDTEEPERATAKKSKTQEISRPNSPSEGEGESSDGRSVNDEGSS--DPKDIDQDNRSTSPSI 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   584 PAtvKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAkSPSEAKSPAEAKSPA 663
Cdd:pfam03154  149 PS--PQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQG-SPATSQPPNQTQSTA 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   664 EAKSPAEAKS---PAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAkSPAAVKSPAEAKSPAAVKSP 740
Cdd:pfam03154  226 APHTLIQQTPtlhPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQT-GPSHMQHPVPPQPFPLTPQS 304

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   741 GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPvKEGAKSPAEAKSPEKAKSPVkediKPPAEAKSPEKAKSPVKEG 820
Cdd:pfam03154  305 SQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPP-REQPLPPAPLSMPHIKPPPT----TPIPQLPNPQSHKHPPHLS 379

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 124286811   821 AKPPEKAkPLDVKSPEAQTPVQEEAKH--PTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAP 881
Cdd:pfam03154  380 GPSPFQM-NSNLPPPPALKPLSSLSTHhpPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLP 441
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 824-1076 1.94e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 42.06  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  824 PEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKtsekVAPKKEEVKSPVKEEVKAKEPPKKV 903
Cdd:NF033839  281 QDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPE----VKPQPEKPKPEVKPQLETPKPEVKP 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  904 EEEKTLPTPKTEAkESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKE 983
Cdd:NF033839  357 QPEKPKPEVKPQP-EKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 435

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  984 KTETTKTEAEDTKAKePSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKA 1063
Cdd:NF033839  436 EKPKPEVKPQPEKPK-PEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQAST 514

                         250
                  ....*....|...
gi 124286811 1064 EKSSSTDQKESQP 1076
Cdd:NF033839  515 NEKATNKPKKSLP 527
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 509-711 2.00e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 42.37  E-value: 2.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  509 PEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVK 588
Cdd:PTZ00449  579 PEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPK 658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  589 SPGEAKSPSEAK------------------------------------------SPAEAKSPAEAKSPAEAKSP------ 620
Cdd:PTZ00449  659 PPKSPKPPFDPKfkekfyddyldaaaksketkttvvldesfesilketlpetpgTPFTTPRPLPPKLPRDEEFPfepigd 738

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  621 --AEAKSPAEAKSPAEAKS------PATVKSPG----EAKSP---SEAKSPAEA----KSPAE----------------- 664
Cdd:PTZ00449  739 pdAEQPDDIEFFTPPEEERtffhetPADTPLPDilaeEFKEEdihAETGEPDEAmkrpDSPSEhedkppgdhpslpkkrh 818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  665 --------------------------------AKS-----------------------------------PAEAKSPAEV 677
Cdd:PTZ00449  819 rldglalsttdlesdagriakdasgkivklkrSKSfddlttveeaeemgaearkivvdddgteaddedthPPEEKHKSEV 898

                         330       340       350
                  ....*....|....*....|....*....|....
gi 124286811  678 KSPGEAKSPAEPKSPAEAKSPaevKSPAEAKSPA 711
Cdd:PTZ00449  899 RRRRPPKKPSKPKKPSKPKKP---KKPDSAFIPS 929
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 730-1048 2.03e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 42.54  E-value: 2.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  730 EAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEaKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKS 809
Cdd:PLN03237 1172 DAKAEEAREKLQRAAARGESGAAKKVSRQAP-KKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKA 1250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  810 PEKAKspvkegaKPPEKAKPLDVKSPEAQTPVQeeakhptdirppeqvKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSP 889
Cdd:PLN03237 1251 PAAAK-------EKEEEDEILDLKDRLAAYNLD---------------SAPAQSAKMEETVKAVPARRAAARKKPLASVS 1308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  890 VKEEVKAKEPPKKVEEEktlPTPKTEAKESKKDEA--PKEAPKPKVEEKKETPTEKPkdsTAEAKKEEAGEKKKAVASEE 967
Cdd:PLN03237 1309 VISDSDDDDDDFAVEVS---LAERLKKKGGRKPAAanKKAAKPPAAAKKRGPATVQS---GQKLLTEMLKPAEAIGISPE 1382

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  968 ETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKED 1047
Cdd:PLN03237 1383 KKVRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESADDSDFDD 1462


                  .
gi 124286811 1048 D 1048
Cdd:PLN03237 1463 D 1463
PHA03378 PHA03378
EBNA-3B; Provisional
 500-769 2.07e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 42.36  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPksPAEAKSPA 579
Cdd:PHA03378  677 SPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP--PAAAPGRA 754

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  580 EPKSPAtvksPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEAksPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PHA03378  755 RPPAAA----PGRARPPAAAPGAPTPQPPPQA-PPAPQQRPRGA--PTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQ 827

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  660 KSPAEAKSpaeAKSPAEVKSPGEAKSPAEPK-SPAEAKSPAEVKSPA---EAKSPAEVksPGEAKSPAAVKSPAEAKSPA 735
Cdd:PHA03378  828 LLTGGVKR---GRPSLKKPAALERQAAAGPTpSPGSGTSDKIVQAPVfypPVLQPIQV--MRQLGSVRAAAASTVTQAPT 902

                         250       260       270
                  ....*....|....*....|....*....|....
gi 124286811  736 avKSPGEAKSPGEAkSPAEAKSPAEAKSPIEVKS 769
Cdd:PHA03378  903 --EYTGERRGVGPM-HPTDIPPSKRAKTDAYVES 933
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
567-684 2.09e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.71  E-value: 2.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  567 AEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAK--SPAEAKSP--AEAKSPAEAKSPAEAKSPAEAKSPATVK 642
Cdd:PRK12373  200 EAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApvPPSEAARPksADAETNAALKTPATAPKAAAKNAKAPEA 279

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 124286811  643 SPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK12373  280 QPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGG 321
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
655-723 2.18e-03

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 41.75  E-value: 2.18e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPA 723
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPK 167
PHA03247 PHA03247
large tegument protein UL36; Provisional
 521-746 2.19e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 2.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSP-----GEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKS 595
Cdd:PHA03247  260 VVGEGADRAPETARGATGPPPPPEAAAPNGAAAPpdgvwGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSP 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  596 PSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPaeAKSPA 675
Cdd:PHA03247  340 LPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVP--ASVPT 417

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124286811  676 EVKSPGEAKSPAEPKSPAEAKSPAEVKSPAeaksPAEVKSPGEAKSPAAVKSPAEAkSPAAVKSPGEAKSP 746
Cdd:PHA03247  418 PAPTPVPASAPPPPATPLPSAEPGSDDGPA----PPPERQPPAPATEPAPDDPDDA-TRKALDALRERRPP 483
rne PRK10811
ribonuclease E; Reviewed
 548-711 2.20e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.33  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  548 PGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPS-EAKSPAEAKSPAEAKSPAEAKSPAEAKSP 626
Cdd:PRK10811  850 PQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVvVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  627 --AEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSP 704
Cdd:PRK10811  930 viTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009


                  ....*..
gi 124286811  705 AEAKSPA 711
Cdd:PRK10811 1010 TVEHNHA 1016
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
595-673 2.30e-03

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 41.75  E-value: 2.30e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  595 SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 673
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKDKISLNSEKP 177
PHA03378 PHA03378
EBNA-3B; Provisional
 604-1021 2.41e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.98  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  604 EAKSPAEAKSPAEAKSPAEAKSPAEAKsPAEAKSPATVKS--PGEAKSPSEAKSPAEAKSPAEAKS-PAEAKSPAEVKSP 680
Cdd:PHA03378  549 ESDEPASTEPVHDQLLPAPGLGPLQIQ-PLTSPTTSQLASsaPSYAQTPWPVPHPSQTPEPPTTQShIPETSAPRQWPMP 627

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  681 GEAKSPAEPKSPAEAKSPAEVKSPAEakSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE 760
Cdd:PHA03378  628 LRPIPMRPLRMQPITFNVLVFPTPHQ--PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMR 705

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  761 --AKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLdvKSPEA- 837
Cdd:PHA03378  706 ppAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQ--PPPQAp 783

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  838 QTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAktsekvaPKKEEVKSPVKEEVKAKEPPKKveeektlptpKTEAK 917
Cdd:PHA03378  784 PAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQG-------PTKQILRQLLTGGVKRGRPSLK----------KPAAL 846

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  918 ESKKDEAPKEAPKPKVEEKK-ETPTEKPKDSTAEakkeeagekkkavaseeETPAKLGVKEEAKPKEKTETTKTEAEDTK 996
Cdd:PHA03378  847 ERQAAAGPTPSPGSGTSDKIvQAPVFYPPVLQPI-----------------QVMRQLGSVRAAAASTVTQAPTEYTGERR 909

                         410       420
                  ....*....|....*....|....*
gi 124286811  997 AKEPSKPTETEKPKKEEMPAAPEKK 1021
Cdd:PHA03378  910 GVGPMHPTDIPPSKRAKTDAYVESQ 934
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 530-557 2.42e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 36.46  E-value: 2.42e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   530 PGEAKSPAEAKSPGEAKSPGEAKSPGEA 557
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 523-884 2.43e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.21  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   523 SPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP-AEPKSPATVKSPGEAKSPSEAK- 600
Cdd:pfam05109  463 STGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPnATSPTPAVTTPTPNATSPTLGKt 542

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   601 SPAEAKSP----AEAKSPAEAKSPAEAKSPAEAK-SPAEAKSPAT--VKSPGEAKSPSEAKSP-----AEAKSPAEAKSP 668
Cdd:pfam05109  543 SPTSAVTTptpnATSPTPAVTTPTPNATIPTLGKtSPTSAVTTPTpnATSPTVGETSPQANTTnhtlgGTSSTPVVTSPP 622

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   669 AEAKSPA-----EVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPgeA 743
Cdd:pfam05109  623 KNATSAVttgqhNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSP--A 700

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEkaKTPVKEgAKSPaeaKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKp 823
Cdd:pfam05109  701 PRPGTTSQASGPGNSSTSTKPGEVNVTK--GTPPKN-ATSP---QAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGAR- 773

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124286811   824 pEKAKPLDVKSPEAQTPvQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKE 884
Cdd:pfam05109  774 -TSTEPTTDYGGDSTTP-RTRYNATTYLPPSTSSKLRPRWTFTSPPVTTAQATVPVPPTSQ 832
PRK13808 PRK13808
adenylate kinase; Provisional
 538-673 2.46e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 41.41  E-value: 2.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE--AKSPA 615
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKkaAKKAA 275

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  616 EAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 673
Cdd:PRK13808  276 KAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKRA 333
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 687-786 2.54e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.18  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  687 AEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAeAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPie 766
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA-AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA-- 110

                          90       100
                  ....*....|....*....|
gi 124286811  767 vKSPEKAKTPVKEGAKSPAE 786
Cdd:PRK12270  111 -AAVEDEVTPLRGAAAAVAK 129
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 602-629 2.54e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 36.46  E-value: 2.54e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   602 PAEAKSPAEAKSPAEAKSPAEAKSPAEA 629
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 608-635 2.54e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 36.46  E-value: 2.54e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   608 PAEAKSPAEAKSPAEAKSPAEAKSPAEA 635
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 499-700 2.59e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 42.00  E-value: 2.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSrvKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPaepkSPAEAKSP 578
Cdd:PRK08691  375 TELQSPSAQTAEKETAA--KKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAP----DEAQTAAG 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP-AEAKSPAEAKSpAEAKSPAEAKSPATVKSPGEAKSPSEAKSPA 657
Cdd:PRK08691  449 TAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPlSEVPSENPIQA-TPNDEAVETETFAHEAPAEPFYGYGFPDNDC 527

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 124286811  658 EAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE 700
Cdd:PRK08691  528 PPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSA 570
PHA03381 PHA03381
tegument protein VP22; Provisional
 562-701 2.71e-03

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 41.15  E-value: 2.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  562 EPKSPAEPKSPAEAKSPAE----PKSPATVKSPGEAK----SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA 633
Cdd:PHA03381   24 DFISPDASPARVSFEEPADrarrGAGQARGRSQAERRfhhyDEARADYPYYTGSSSEDERPADPRPSRRPHAQPEASGPG 103

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  634 EAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEVKSPGEAKSPAePKSPAEAKSPAEV 701
Cdd:PHA03381  104 PARGARGPAGSRGRGRRAESPSPRDPPNPKGA-SAPRGRKSACADSAALLDAPA-PAAPKRQKTPAGL 169
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 499-863 2.80e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 42.02  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGE-AKSPAEAKSPGEAKSPGEAKSPGeAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PRK14949  426 AEAVAEADASAEPADTVEQALDDESELLAALNAEqAVILSQAQSQGFEASSSLDADNS-AVPEQIDSTAEQSVVNPSVTD 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP-AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAkSP 656
Cdd:PRK14949  505 TQVDDTSASNNSAADNTVDDNYSAEDTLESNGLDEGDyAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANVQSAQ-SA 583

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  657 AEAKSPAEAKSPAEAKSPAEVkSPGE-------------------AKSPAEPKSPaeaKSPAEVKSpaeaKSPAEVKSPG 717
Cdd:PRK14949  584 AEAQPSSQSLSPISAVTTAAA-SLADddildavlaardsllsdldALSPKEGDGK---KSSADRKP----KTPPSRAPPA 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  718 EAKSPAAVkSPAEAKSPAAVKSPGEAKSPGEAKSPAeakSPAEAKSPIEVKSPEKAKTPvkegaksPAEAksPEKAKSPV 797
Cdd:PRK14949  656 SLSKPASS-PDASQTSASFDLDPDFELATHQSVPEA---ALASGSAPAPPPVPDPYDRP-------PWEE--APEVASAN 722

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  798 KEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEA----KHPTDIRPPEQVKSPAKE 863
Cdd:PRK14949  723 DGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTAltqtSSEVQDTELNLVLLSSGS 792
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 85-354 2.82e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   85 CVVAAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQ 164
Cdd:COG4942    15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  165 LRLEQEHLLEDIAhvrQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEevgellgqiq 244
Cdd:COG4942    95 LRAELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE---------- 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  245 gcgaaqaqaqaeardalkcdvtsaLREIRAQLEGH-AVQSTLQSEEwfRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQL 323
Cdd:COG4942   162 ------------------------LAALRAELEAErAELEALLAEL--EEERAALEALKAERQKLLARLEKELAELAAEL 215

                         250       260       270
                  ....*....|....*....|....*....|.
gi 124286811  324 QARTTELEALKSTKESLERQRSELEDRHQAD 354
Cdd:COG4942   216 AELQQEAEELEALIARLEAEAAAAAERTPAA 246
PRK12472 PRK12472
hypothetical protein; Provisional
 523-691 2.83e-03

hypothetical protein; Provisional


Pssm-ID: 237110 [Multi-domain]  Cd Length: 508  Bit Score: 41.39  E-value: 2.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  523 SPGEAkSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPA-EPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKS 601
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDAARAAdEAKTAAAAAAREAAPLKASLRKLERAKARADAEL 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  602 PAEAKSPAEAKSPaEAKSPAEakspaEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSpAEAKSPAEVKSPG 681
Cdd:PRK12472  242 KRADKALAAAKTD-EAKARAE-----ERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKA-AAAKKAETAKAAT 314

                         170
                  ....*....|
gi 124286811  682 EAKSPAEPKS 691
Cdd:PRK12472  315 DAKLALEPVS 324
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 507-808 2.84e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 41.48  E-value: 2.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   507 ASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGeAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKS---PAEPKS 583
Cdd:pfam17823  135 AALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAA-SPAPRTAASSTTAASSTTAASSAPTTAASSAPAtltPARGIS 213

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   584 PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE-AKSPAEAKSPAEAKSPATVKSPgEAKSPSEAK---SPAEA 659
Cdd:pfam17823  214 TAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAAlATLAAAAGTVASAAGTINMGDP-HARRLSPAKhmpSDTMA 292

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   660 KSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPaeakspaevKSPGEAKSPAAVKSPAEAKSPAA--V 737
Cdd:pfam17823  293 RNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTP---------KSVASTNLAVVTTTKAQAKEPSAspV 363

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811   738 KSPGEAKSPG-EAKSPAEAKSP----AEAKSPIEVKSPEKAKTPVKEGAKSPA-EAKSPEKAKSPVKEDIKPPAEAK 808
Cdd:pfam17823  364 PVLHTSMIPEvEATSPTTQPSPllptQGAAGPGILLAPEQVATEATAGTASAGpTPRSSGDPKTLAMASCQLSTQGQ 440
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 593-825 3.05e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 41.62  E-value: 3.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  593 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAksPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAK 672
Cdd:PRK08691  361 LAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPR--PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  673 SPAEVKSPgeakspaEPKSPAEAKSpaeVKSPAEAKSPAEVK-SPGEAKSPAAVKSPAEAKSPAAVKSpgeakSPGEAKS 751
Cdd:PRK08691  439 APDEAQTA-------AGTAQTSAKS---IQTASEAETPPENQvSKNKAADNETDAPLSEVPSENPIQA-----TPNDEAV 503

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  752 PAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPaeaKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPE 825
Cdd:PRK08691  504 ETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIP---PPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPE 574
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
206-402 3.13e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 3.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  206 EAEAARVELQKKAQALQEecgyLRRHHQE--EVGELLGQIQGCGAAQAQAQAEARDALkcdVTSALREIRAQLEGHAVQS 283
Cdd:COG4913   239 RAHEALEDAREQIELLEP----IRELAERyaAARERLAELEYLRAALRLWFAQRRLEL---LEAELEELRAELARLEAEL 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  284 TLQSEewfrvRLDRLSEAAKVNTDAMRSAQ-EEITEYRRQLQARTTELEALKSTKESLERQRSELE----------DRHQ 352
Cdd:COG4913   312 ERLEA-----RLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGlplpasaeefAALR 386

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 124286811  353 ADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNvkmALDIEIAAYRK 402
Cdd:COG4913   387 AEAAALLEALEEELEALEEALAEAEAALRDLRRELR---ELEAEIASLER 433
rne PRK10811
ribonuclease E; Reviewed
 506-698 3.17e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.56  E-value: 3.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  506 AASPEKET-KSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSP 584
Cdd:PRK10811  831 CASPEMASgKVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV 910

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  585 ATVKSPGEAKSPSEAKSPA---EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKS 661
Cdd:PRK10811  911 VVETTHPEVIAAPVTEQPQvitESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 124286811  662 PAEAKSPAEAKSPAEVKSPGEAKSPAEP---KSPAEAKSP 698
Cdd:PRK10811  991 VETVTAVEPEVAPAQVPEATVEHNHATApmtRAPAPEYVP 1030
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 524-551 3.28e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 36.08  E-value: 3.28e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   524 PGEAKSPGEAKSPAEAKSPGEAKSPGEA 551
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
PRK13808 PRK13808
adenylate kinase; Provisional
 573-693 3.42e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 41.03  E-value: 3.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  573 AEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSE 652
Cdd:PRK13808  197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAK 276

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 124286811  653 AKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPA 693
Cdd:PRK13808  277 AAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPK 317
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 503-714 3.44e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 41.52  E-value: 3.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   503 AEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKS----PGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:TIGR00927  631 SKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESegeiPAERKGEQEGEGEIEAKEADHKGET 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:TIGR00927  711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 124286811   659 AKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK 714
Cdd:TIGR00927  791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAK 846
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 504-652 3.46e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 41.77  E-value: 3.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  504 EEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKspaepKS 583
Cdd:PLN03237 1317 DDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMR-----AS 1391

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  584 PATVKSPGEAKSPSEAKSpaeaKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVK-SPGEAKSPSE 652
Cdd:PLN03237 1392 PFNKKSGSVLGRAATNKE----TESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVlSDSESESADD 1457
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 728-906 3.58e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.39  E-value: 3.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  728 PAEAkSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAkTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEA 807
Cdd:PRK07994  361 PAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  808 KSPEkaksPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAkhptdirppeqvksPAKEKA---KSPEKEEAKTSEKVAPKke 884
Cdd:PRK07994  439 KKSE----PAAASRARPVNSALERLASVRPAPSALEKA--------------PAKKEAyrwKATNPVEVKKEPVATPK-- 498

                         170       180
                  ....*....|....*....|..
gi 124286811  885 EVKSPVKEEvKAKEPPKKVEEE 906
Cdd:PRK07994  499 ALKKALEHE-KTPELAAKLAAE 519
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 603-846 3.61e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.45  E-value: 3.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  603 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKspAEAKSPAEAKSPAEVKSPGE 682
Cdd:PLN03209  307 AETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPK--AVVPRPLSPYTAYEDLKPPT 384

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  683 AKSPAEPKSPAEAKSPAEVkspaeAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPaeak 762
Cdd:PLN03209  385 SPIPTPPSSSPASSKSVDA-----VAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSP---- 455

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  763 spievKSPEKAKTPVKEgakSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQ 842
Cdd:PLN03209  456 -----TAPTGVSPSVSS---TSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTN 527


                  ....
gi 124286811  843 EEAK 846
Cdd:PLN03209  528 EVVK 531
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 662-688 3.70e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.69  E-value: 3.70e-03
                           10        20
                   ....*....|....*....|....*..
gi 124286811   662 PAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVK 27
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 649-816 3.99e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.00  E-value: 3.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  649 SPSEAKSPAEAKSPAEAKSPAEaksPAEVKSPGEAKSPAEPKSPAEAKSPAevKSPAEAKSPAEVKSPGEAKSPAAVKSP 728
Cdd:PRK07994  365 LPEPEVPPQSAAPAASAQATAA---PTAAVAPPQAPAVPPPPASAPQQAPA--VPLPETTSQLLAARQQLQRAQGATKAK 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  729 AEAKSPAAVKSPGEAKSPGEAkSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEaksPEKAKSPVKEDIKPPAEAK 808
Cdd:PRK07994  440 KSEPAAASRARPVNSALERLA-SVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT---PKALKKALEHEKTPELAAK 515


                  ....*...
gi 124286811  809 SPEKAKSP 816
Cdd:PRK07994  516 LAAEAIER 523
valS PRK14900
valyl-tRNA synthetase; Provisional
 658-799 4.05e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 41.52  E-value: 4.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  658 EAKSPAEAKSPAEAKSPAEVKSPGEAKspaepkspaeaKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PRK14900  920 NEQKPTQDGPAAEAQPAQENTVVESAE-----------KAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAAT 988

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124286811  738 KSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKaKTPVKEGAKSPAEAKSpekAKSPVKE 799
Cdd:PRK14900  989 RAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAK-KAPAKKVARKPAAKKA---AKKPARK 1046
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 517-664 4.06e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 41.12  E-value: 4.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  517 VKEEAKSPGEAKSPGEAKSPAEAKSPgeAKSPGEAKSPGE-AKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKS 595
Cdd:PRK13108  291 VVDEALEREPAELAAAAVASAASAVG--PVGPGEPNQPDDvAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSE 368

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  596 PS---EAKSPAEAKSPAEAKSPAEAKSPAE---AKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE 664
Cdd:PRK13108  369 ADierEQPGDLAGQAPAAHQVDAEAASAAPeepAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAE 443
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 536-562 4.20e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.69  E-value: 4.20e-03
                           10        20
                   ....*....|....*....|....*..
gi 124286811   536 PAEAKSPGEAKSPGEAKSPGEAKSPAE 562
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVK 27
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 656-683 4.24e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.69  E-value: 4.24e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   656 PAEAKSPAEAKSPAEAKSPAEVKSPGEA 683
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 614-641 4.41e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.69  E-value: 4.41e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   614 PAEAKSPAEAKSPAEAKSPAEAKSPATV 641
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 503-619 4.46e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 40.73  E-value: 4.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  503 AEEAASPEKETKSRVKEEAKSPGEAKSPgEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKS-PAEPKSPAEaksPAEP 581
Cdd:PRK13108  342 DEVAAESVVQVADRDGESTPAVEETSEA-DIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAAlASEAHDETE---PEVP 417

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 124286811  582 KSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 619
Cdd:PRK13108  418 EKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSS 455
PHA03247 PHA03247
large tegument protein UL36; Provisional
 563-689 4.49e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  563 PKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVK 642
Cdd:PHA03247  361 PPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEP 440

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 124286811  643 SPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAEVKSPGEAKSPAEP 689
Cdd:PHA03247  441 GSDDGPAPPPERQPPAPATEPAPDDPDDA-TRKALDALRERRPPEPP 486
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 88-519 4.87e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 4.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   88 AAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRL 167
Cdd:COG1196   321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  168 EQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQgcg 247
Cdd:COG1196   401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA--- 477

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  248 aaQAQAQAEARDALKcDVTSALREIRAQLEG--------------HAVQSTLQSEEWFRVRLDRLSEAA------KVNTD 307
Cdd:COG1196   478 --ALAELLEELAEAA-ARLLLLLEAEADYEGflegvkaalllaglRGLAGAVAVLIGVEAAYEAALEAAlaaalqNIVVE 554

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  308 AMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLL 387
Cdd:COG1196   555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  388 NVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLTEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVEGQTEEIRVTEG 467
Cdd:COG1196   635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811  468 VTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPE-----KETKSRVKE 519
Cdd:COG1196   715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppdlEELERELER 771
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 533-637 4.88e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.95  E-value: 4.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  533 AKSPAEAKSPGEAKSPgEAKSPGEAksPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAK 612
Cdd:PRK14950  361 VPVPAPQPAKPTAAAP-SPVRPTPA--PSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIP 437

                          90       100
                  ....*....|....*....|....*
gi 124286811  613 SPAEAKSPAEAKSPAEAKSPAEAKS 637
Cdd:PRK14950  438 VDEKPKYTPPAPPKEEEKALIADGD 462
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 506-734 5.05e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 40.77  E-value: 5.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  506 AASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPA 585
Cdd:NF033838  254 ATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPT 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  586 TVKSPGE---AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSpAEAKSPATVKSpGEAKSPSEAKSPAEAKSP 662
Cdd:NF033838  334 NTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK-AEATRLEKIKT-DRKKAEEEAKRKAAEEDK 411

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124286811  663 AEAKsPAEAKSPAEVKSP-GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK-SPGEAKSPAAVKSPAEAKSP 734
Cdd:NF033838  412 VKEK-PAEQPQPAPAPQPeKPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEyNRLTQQQPPKTEKPAQPSTP 484
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 553-619 5.21e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 5.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124286811  553 SPGEAKSPAEPKSPAEPKspAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 619
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAK--AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 805-947 5.34e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 40.73  E-value: 5.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  805 AEAKSPEKAKSPVKEG--AKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQvkSPAKEKAKSPEKEEAKTSEKVAPK 882
Cdd:PRK13108  306 AAVASAASAVGPVGPGepNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGES--TPAVEETSEADIEREQPGDLAGQA 383

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  883 KEEVKSPVKEEVKAKEPPKKVEEEktlptpktEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDS 947
Cdd:PRK13108  384 PAAHQVDAEAASAAPEEPAALASE--------AHDETEPEVPEKAAPIPDPAKPDELAVAGPGDD 440
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
631-700 5.35e-03

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 40.59  E-value: 5.35e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  631 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE 700
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 590-617 5.64e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.31  E-value: 5.64e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   590 PGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 644-671 5.64e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.31  E-value: 5.64e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   644 PGEAKSPSEAKSPAEAKSPAEAKSPAEA 671
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 746-938 5.77e-03

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 40.93  E-value: 5.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  746 PGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKppE 825
Cdd:PTZ00341  936 PEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVE--E 1013

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  826 KAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKE--EAKTSEKVAPKKEEVKSPVKEEVK--AKEPPK 901
Cdd:PTZ00341 1014 NIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEEniEEYDEENVEEIEENIEENIEENVEenVEENVE 1093

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 124286811  902 KVEE--EKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKE 938
Cdd:PTZ00341 1094 EIEEnvEENVEENAEENAEENAEENAEEYDDENPEEHNE 1132
PRK13808 PRK13808
adenylate kinase; Provisional
 645-792 5.88e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 40.26  E-value: 5.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSpgeakspAA 724
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAK-------AV 267

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  725 VKSPAEAKSPAAVKSPGEAKSpgeAKSPAEAKSPAEAKSPIEVKSPEKAKTPvKEGAKSPAEAKSPEK 792
Cdd:PRK13808  268 KKAAKKAAKAAAKAAKGAAKA---TKGKAKAKKKAGKKAAAGSKAKATAKAP-KRGAKGKKAKKVTKK 331
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 706-789 6.07e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 6.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  706 EAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPA 785
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....
gi 124286811  786 EAKS 789
Cdd:PRK12270  114 EDEV 117
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 692-719 6.10e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.31  E-value: 6.10e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   692 PAEAKSPAEVKSPAEAKSPAEVKSPGEA 719
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 650-677 6.10e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.31  E-value: 6.10e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   650 PSEAKSPAEAKSPAEAKSPAEAKSPAEV 677
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 665-896 6.13e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 40.67  E-value: 6.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   665 AKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAeakspaevkSPGEAKSPAAVKSPaeakSPAAVKSPGEAK 744
Cdd:pfam05109  422 SKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPA---------STGPTVSTADVTSP----TPAGTTSGASPV 488

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   745 SPgeakSPAEAKSPAEAKSPiEVKSPEKAKTPVKEGAKSPAEAkspekAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPP 824
Cdd:pfam05109  489 TP----SPSPRDNGTESKAP-DMTSPTSAVTTPTPNATSPTPA-----VTTPTPNATSPTLGKTSPTSAVTTPTPNATSP 558

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124286811   825 EKAkpLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKA 896
Cdd:pfam05109  559 TPA--VTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSA 628
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 529-602 6.41e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 6.41e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  529 SPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSP-AEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSP 602
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPtPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 596-623 6.41e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.31  E-value: 6.41e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   596 PSEAKSPAEAKSPAEAKSPAEAKSPAEA 623
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 740-767 6.47e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 35.31  E-value: 6.47e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   740 PGEAKSPGEAKSPAEAKSPAEAKSPIEV 767
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
PRK13808 PRK13808
adenylate kinase; Provisional
 717-828 6.64e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.87  E-value: 6.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  717 GEAKSPAAVKSPAEAKSP--AAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSP-AEAKSPEKA 793
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAkkASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAkAVKKAAKKA 274

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 124286811  794 KSPVKEDIKPPAEA-KSPEKAKSPVKEGAKPPEKAK 828
Cdd:PRK13808  275 AKAAAKAAKGAAKAtKGKAKAKKKAGKKAAAGSKAK 310
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 552-691 6.89e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 40.15  E-value: 6.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   552 KSPGEAKSPAEPKSPAEPKSpaEAKSPAEPKSPATV-KSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEaK 630
Cdd:pfam13254  197 PNSFKEVTPVGLMRSPAPGG--HSKSPSVSGISADSsPTKEEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPKDSE-E 273

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124286811   631 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKS 691
Cdd:pfam13254  274 PAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPKPKP 334
PRK11901 PRK11901
hypothetical protein; Reviewed
 581-645 6.97e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 40.05  E-value: 6.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPA--EAKSPAEAKSPAEAKSPAEAKSPATV--KSPG 645
Cdd:PRK11901  175 PTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAvnHHKTATVAVPPATSGKPKSGAASARAlsSAPA 243
PRK13808 PRK13808
adenylate kinase; Provisional
 705-838 7.63e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.87  E-value: 7.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  705 AEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAeaKSPAEAKSPIEVKSPEKAKTPVKEGAKSP 784
Cdd:PRK13808  197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTA--AKAAKKAKKTAKKALKKAAKAVKKAAKKA 274

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 124286811  785 aeAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQ 838
Cdd:PRK13808  275 --AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 533-948 7.71e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 40.28  E-value: 7.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   533 AKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAeakSPAEPKSPATVKSPgeakspseakSPAEAKSPAEAK 612
Cdd:pfam05109  422 SKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPA---STGPTVSTADVTSP----------TPAGTTSGASPV 488

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   613 SPaeakSPAEAKSPAEAKSPAEAKSPATVKSPG-EAKSPseakSPAEAKSPAEAKSPAEAKSpaevkSPGEAKSPAEPKs 691
Cdd:pfam05109  489 TP----SPSPRDNGTESKAPDMTSPTSAVTTPTpNATSP----TPAVTTPTPNATSPTLGKT-----SPTSAVTTPTPN- 554

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   692 pAEAKSPAeVKSPAEAkspAEVKSPGEAKSPAAVKSPA-EAKSPAAVKSPGEAKSPGEAKSpaeakspAEAKSPIEVKSP 770
Cdd:pfam05109  555 -ATSPTPA-VTTPTPN---ATIPTLGKTSPTSAVTTPTpNATSPTVGETSPQANTTNHTLG-------GTSSTPVVTSPP 622

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   771 EKAKTPVKEGAKSPAEAKSPEKAKSP--VKEDIKPPAEAKSpeKAKSPVKEGAKPPEKAKPLDVkspeaqTPVQEEAKHP 848
Cdd:pfam05109  623 KNATSAVTTGQHNITSSSTSSMSLRPssISETLSPSTSDNS--TSHMPLLTSAHPTGGENITQV------TPASTSTHHV 694

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811   849 TdirppeqvkspakekAKSPEKEEAKTSEKVAPKKEEVKS-PVKEEVKAKEPPKKVE-------EEKTLPTPKTEAKESK 920
Cdd:pfam05109  695 S---------------TSSPAPRPGTTSQASGPGNSSTSTkPGEVNVTKGTPPKNATspqapsgQKTAVPTVTSTGGKAN 759

                          410       420
                   ....*....|....*....|....*...
gi 124286811   921 KDEAPKEAPKPKVEEKKETPTEKPKDST 948
Cdd:pfam05109  760 STTGGKHTTGHGARTSTEPTTDYGGDST 787
PRK12472 PRK12472
hypothetical protein; Provisional
 607-766 7.79e-03

hypothetical protein; Provisional


Pssm-ID: 237110 [Multi-domain]  Cd Length: 508  Bit Score: 40.24  E-value: 7.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  607 SPAEAkSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEA-KSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDAaRAADEAKTAAAAAAREAAPLKASLRKLERAKARADAEL 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  686 PAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSpGEAKSPAEAKSPAEAKSPI 765
Cdd:PRK12472  242 KRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKA-AAAKKAETAKAATDAKLAL 320


                  .
gi 124286811  766 E 766
Cdd:PRK12472  321 E 321
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
619-688 7.83e-03

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 39.82  E-value: 7.83e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  619 SPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 745-830 7.88e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 7.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  745 SPGEAKSPAEAKSPAEAKSPievkspekakTPVKEGAKSPAEAKSPEKAKSPV-KEDIKPPAEAKSPEKAKSPVKEgAKP 823
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAKAE----------KTTPEKPKAAAPTPEPPAASKPTpPAAAKPPEPAPAAKPPPTPVAR-ADP 187


                  ....*..
gi 124286811  824 PEKAKPL 830
Cdd:PTZ00144  188 RETRVPM 194
PRK13808 PRK13808
adenylate kinase; Provisional
 634-762 8.11e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.87  E-value: 8.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  634 EAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAE--AKSPA 711
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKkaAKKAA 275

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 124286811  712 EVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK13808  276 KAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 532-656 8.23e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 40.31  E-value: 8.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  532 EAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPgeAKSPSEAKSPAEAKSPAEA 611
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTP--EQQPPVARSAPLPPSPQAS 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 124286811  612 KSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSP 656
Cdd:PRK14954  450 APRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494
PRK13808 PRK13808
adenylate kinase; Provisional
 610-744 8.62e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.49  E-value: 8.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  610 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKspgeAKSPAEP 689
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAA----KAVKKAA 271

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 124286811  690 KSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAK 744
Cdd:PRK13808  272 KKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326
pylS PRK09537
pyrrolysine--tRNA(Pyl) ligase;
571-639 8.75e-03

pyrrolysine--tRNA(Pyl) ligase;


Pssm-ID: 236555 [Multi-domain]  Cd Length: 417  Bit Score: 39.82  E-value: 8.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124286811  571 SPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA 639
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPK 167
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 518-545 9.41e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 34.54  E-value: 9.41e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   518 KEEAKSPGEAKSPGEAKSPAEAKSPGEA 545
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 145-382 9.73e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.75  E-value: 9.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  145 EREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEE 224
Cdd:COG4942    26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  225 cgylrrhhqeeVGELLGQIQGCGAAQAQAQAEARDalkcDVTSALReiRAQLEGHAVQSTLQSEEWFRVRLDRLSEaakv 304
Cdd:COG4942   106 -----------LAELLRALYRLGRQPPLALLLSPE----DFLDAVR--RLQYLKYLAPARREQAEELRADLAELAA---- 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 124286811  305 NTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLRE 382
Cdd:COG4942   165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
DUF1388 pfam07142
Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...
 680-707 9.78e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.


Pssm-ID: 429314 [Multi-domain]  Cd Length: 28  Bit Score: 34.54  E-value: 9.78e-03
                           10        20
                   ....*....|....*....|....*...
gi 124286811   680 PGEAKSPAEPKSPAEAKSPAEVKSPAEA 707
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 515-651 9.93e-03

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 39.48  E-value: 9.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124286811  515 SRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPG-----EAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKS 589
Cdd:PHA03325  271 SAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEplpasLPPPPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTS 350

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 124286811  590 PGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPS 651
Cdd:PHA03325  351 SKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIP 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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