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Conserved domains on  [gi|6323881|ref|NP_013952|]
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mitochondrial 54S ribosomal protein YmL44 [Saccharomyces cerevisiae S288C]

Protein Classification

mL53 family ribosomal protein( domain architecture ID 10566704)

mL53 family ribosomal protein such as mammalian 39S ribosomal protein L53 and fungal 54S ribosomal protein L44, which are components of the mitochondrial ribosome (mitoribosome), a dedicated translation machinery responsible for the synthesis of mitochondrial genome-encoded proteins, including at least some of the essential transmembrane subunits of the mitochondrial respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP_L53 pfam10780
39S ribosomal protein L53/MRP-L53; MRP-L53 is also known as Mrp144. It is part of the 39S ...
 13-63 2.60e-19

39S ribosomal protein L53/MRP-L53; MRP-L53 is also known as Mrp144. It is part of the 39S ribosome.


:

Pssm-ID: 463186  Cd Length: 54  Bit Score: 74.17  E-value: 2.60e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 6323881    13 FNPFGKEAKVARLVLAAI---PPTQRNMGTQIQSEIISDYNKVKPLVKVTYKDK 63
Cdd:pfam10780  1 FNPFSPNAKSARLFLALLsspPPAARNPGCKIKTKVLPDTSTSPPTVKVTFKDG 54
 
Name Accession Description Interval E-value
MRP_L53 pfam10780
39S ribosomal protein L53/MRP-L53; MRP-L53 is also known as Mrp144. It is part of the 39S ...
 13-63 2.60e-19

39S ribosomal protein L53/MRP-L53; MRP-L53 is also known as Mrp144. It is part of the 39S ribosome.


Pssm-ID: 463186  Cd Length: 54  Bit Score: 74.17  E-value: 2.60e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 6323881    13 FNPFGKEAKVARLVLAAI---PPTQRNMGTQIQSEIISDYNKVKPLVKVTYKDK 63
Cdd:pfam10780  1 FNPFSPNAKSARLFLALLsspPPAARNPGCKIKTKVLPDTSTSPPTVKVTFKDG 54
 
Name Accession Description Interval E-value
MRP_L53 pfam10780
39S ribosomal protein L53/MRP-L53; MRP-L53 is also known as Mrp144. It is part of the 39S ...
 13-63 2.60e-19

39S ribosomal protein L53/MRP-L53; MRP-L53 is also known as Mrp144. It is part of the 39S ribosome.


Pssm-ID: 463186  Cd Length: 54  Bit Score: 74.17  E-value: 2.60e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 6323881    13 FNPFGKEAKVARLVLAAI---PPTQRNMGTQIQSEIISDYNKVKPLVKVTYKDK 63
Cdd:pfam10780  1 FNPFSPNAKSARLFLALLsspPPAARNPGCKIKTKVLPDTSTSPPTVKVTFKDG 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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