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Conserved domains on  [gi|5835961|ref|NP_008725|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Smithornis sharpei]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 5-324 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 601.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     5 LATNLTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLA 84
Cdd:MTH00111   4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    85 LLLAITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSG 164
Cdd:MTH00111  84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   165 NYNLNTLITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALT 244
Cdd:MTH00111 164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   245 TILFFNPSSLNLPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPPHL 324
Cdd:MTH00111 244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 5-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 601.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     5 LATNLTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLA 84
Cdd:MTH00111   4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    85 LLLAITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSG 164
Cdd:MTH00111  84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   165 NYNLNTLITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALT 244
Cdd:MTH00111 164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   245 TILFFNPSSLNLPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPPHL 324
Cdd:MTH00111 244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
NADHdh pfam00146
NADH dehydrogenase;
13-311 8.35e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 331.36  E-value: 8.35e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     13 LSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     93 TPLPL--PFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNT 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    171 LITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFN 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835961    251 PSSLNLPQEFFPMTLAmKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHA 311
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-305 1.01e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 304.36  E-value: 1.01e-102
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:COG1005  20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   97 L--PFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITT 174
Cdd:COG1005 100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEA 179

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961  175 QE-PLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFF---N 250
Cdd:COG1005 180 QAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLggwL 259

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 5835961  251 PSSLNLPQEFFPMTLAM--KTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 305
Cdd:COG1005 260 GPFPILPLGGLPGILWFllKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 5-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 601.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     5 LATNLTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLA 84
Cdd:MTH00111   4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    85 LLLAITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSG 164
Cdd:MTH00111  84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   165 NYNLNTLITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALT 244
Cdd:MTH00111 164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   245 TILFFNPSSLNLPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPPHL 324
Cdd:MTH00111 244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-324 2.44e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 501.06  E-value: 2.44e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     1 MSYRLATNLTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTAT 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    81 PVLALLLAITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   161 ILSGNYNLNTLITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   241 NALTTILFFNPSSLNLPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ....
gi 5835961   321 PPHL 324
Cdd:MTH00134 321 PPQL 324
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 13-324 1.19e-178

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 496.45  E-value: 1.19e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    13 LSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIW 92
Cdd:MTH00104   7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    93 TPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLI 172
Cdd:MTH00104  87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   173 TTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFNPS 252
Cdd:MTH00104 167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5835961   253 SLNLPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPPHL 324
Cdd:MTH00104 247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-322 5.03e-178

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 494.91  E-value: 5.03e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     5 LATNLTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLA 84
Cdd:MTH00071   4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    85 LLLAITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSG 164
Cdd:MTH00071  84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   165 NYNLNTLITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALT 244
Cdd:MTH00071 164 GFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLS 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5835961   245 TILFFNPSSLNLPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPP 322
Cdd:MTH00071 244 TILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-322 1.10e-147

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 417.77  E-value: 1.10e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     5 LATNLTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLA 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    85 LLLAITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSG 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   165 NYNLNTLITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALT 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5835961   245 TILFFNPSslnlpqeFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPP 322
Cdd:MTH00218 241 VILFLGTS-------LTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 12-324 9.42e-143

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 405.90  E-value: 9.42e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    12 SLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITI 91
Cdd:MTH00040  10 LLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    92 WTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTL 171
Cdd:MTH00040  90 WSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   172 ITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFNP 251
Cdd:MTH00040 170 SNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGG 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5835961   252 SSlnLPQEFFP---MTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPPHL 324
Cdd:MTH00040 250 GS--PFNEIFPiniIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 9-319 7.04e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 342.11  E-value: 7.04e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     9 LTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLA 88
Cdd:MTH00195   5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    89 ITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNL 168
Cdd:MTH00195  85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   169 NTLITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILF 248
Cdd:MTH00195 165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835961   249 FNPSSLNLpqeffpmtLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAG 319
Cdd:MTH00195 245 LGGGGTII--------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
13-311 8.35e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 331.36  E-value: 8.35e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     13 LSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     93 TPLPL--PFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNT 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    171 LITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFN 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835961    251 PSSLNLPQEFFPMTLAmKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHA 311
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 17-317 1.68e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 328.27  E-value: 1.68e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:MTH00193  13 ICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    97 LPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITTQE 176
Cdd:MTH00193  93 YLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   177 PLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFNPSSLNL 256
Cdd:MTH00193 173 YIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSL 252

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835961   257 pqEFFpmtlaMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICY 317
Cdd:MTH00193 253 --LFY-----LKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 19-306 2.74e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 327.98  E-value: 2.74e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    19 VLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLPLP 98
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    99 FSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITTQEPL 178
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   179 YLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFNPSSLNLPQ 258
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFLL 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 5835961   259 efFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 306
Cdd:MTH00143 254 --GGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 17-306 1.21e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 310.81  E-value: 1.21e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:MTH00225  12 ICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    97 LPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITTQE 176
Cdd:MTH00225  92 SMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   177 PLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFNPSSLNl 256
Cdd:MTH00225 172 YFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFFVT- 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 5835961   257 pqefFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 306
Cdd:MTH00225 251 ----IDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAY 296
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 17-322 2.26e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 308.59  E-value: 2.26e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:MTH00216  17 VPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIP 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    97 LP--FSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITT 174
Cdd:MTH00216  97 YErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLA 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   175 QEP-LYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFNpSS 253
Cdd:MTH00216 177 QNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLG-GW 255

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835961   254 LNLPQEFF--PMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPP 322
Cdd:MTH00216 256 LSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 13-322 3.49e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 305.50  E-value: 3.49e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    13 LSYAIPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIW 92
Cdd:MTH00054   9 LAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    93 TPLPL--PFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNT 170
Cdd:MTH00054  89 GVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTE 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   171 LITTQEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILF-- 248
Cdd:MTH00054 169 IVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFlg 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5835961   249 --FNPSSLNLPQEFFPMtLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYAGLPP 322
Cdd:MTH00054 249 gwLVISGPTSYFSNFVW-FGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-305 1.01e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 304.36  E-value: 1.01e-102
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:COG1005  20 VFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIP 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   97 L--PFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITT 174
Cdd:COG1005 100 FgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEA 179

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961  175 QE-PLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFF---N 250
Cdd:COG1005 180 QAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLggwL 259

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 5835961  251 PSSLNLPQEFFPMTLAM--KTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 305
Cdd:COG1005 260 GPFPILPLGGLPGILWFllKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
17-311 1.56e-97

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 290.94  E-value: 1.56e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:PRK06076  21 VVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIP 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    97 L--PFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITT 174
Cdd:PRK06076 101 FgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   175 QEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFN---- 250
Cdd:PRK06076 181 QFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgwlp 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835961   251 PSSLNLPQEFFPMTLAmKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHA 311
Cdd:PRK06076 261 PFPLGGGIPGAIWFVL-KVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLTA 320
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 17-322 2.03e-86

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 263.42  E-value: 2.03e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:MTH00029  18 VPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVT 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    97 LP--FSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITT 174
Cdd:MTH00029  98 MDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVIS 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   175 QEPLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFN---- 250
Cdd:MTH00029 178 QRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgwls 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   251 --------PSSLNLPQEFFPMTLAM----KTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHASMPICYA 318
Cdd:MTH00029 258 pldgiptpPEAFSIFEQIASSKSSFwfftKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFN 337


                 ....
gi 5835961   319 GLPP 322
Cdd:MTH00029 338 GVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 1-315 1.76e-85

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 259.71  E-value: 1.76e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     1 MSYRLATNLTMSLSYAipvLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTAT 80
Cdd:MTH00010   1 MNISFFISILLSYVMA---LLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    81 PVLALLLAITIWTPLPLPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVI 160
Cdd:MTH00010  78 PMMSLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSAL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   161 ILSGNYNLNTLITTQEPLYLIFsTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 240
Cdd:MTH00010 158 LILQTFSFSKIIMSQYSWILLM-IIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIM 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5835961   241 NALTTILFFNPSSlnlPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLwhASMPI 315
Cdd:MTH00010 237 SLFTSVFFTSFIP---SIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPI 306
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 17-304 6.85e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 198.58  E-value: 6.85e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    17 IPVLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATPVLALLLAITIWTPLP 96
Cdd:MTH00090   7 IFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    97 LPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVII------LSGNYNLNT 170
Cdd:MTH00090  87 YFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLhnnsfsFVSSFSLSL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   171 LIttqepLYLIFstwplammwYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFN 250
Cdd:MTH00090 167 FV-----IYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 5835961   251 PSSLNLpqeFFPMTLamktlllsagFLWIRASYPRFRYDQLMHLLWKNFLPLTL 304
Cdd:MTH00090 233 FSFLML---FLIFSL----------LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 9-312 1.67e-49

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 168.59  E-value: 1.67e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961     9 LTMSLSYAIPVLVAVafltLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIRPSSSSPALFTATP---VLAL 85
Cdd:CHL00032  34 LTLVLGITIGVLVIV----WLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPsiaVISI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    86 LLAITIwtplpLPFS----LADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVII 161
Cdd:CHL00032 110 LLSYLV-----IPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   162 LSGnyNLNTL-ITTQEPLYLIFStWPL------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEY 234
Cdd:CHL00032 185 LSN--SLSTVdIVEAQSKYGFWG-WNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   235 ANIMLMNALTTILFFNPSSLNLPQEFFP-------------------MTLAmKTLLlsagFLWI----RASYPRFRYDQL 291
Cdd:CHL00032 262 LNLLVSSLFVTVLYLGGWNLSIPYIFIPelfeinktggvfgttigifITLA-KTYL----FLFIsittRWTLPRLRMDQL 336

                        330       340
                 ....*....|....*....|.
gi 5835961   292 MHLLWKNFLPLTLALCLWHAS 312
Cdd:CHL00032 337 LNLGWKFLLPISLGNLLLTTS 357
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 19-304 1.00e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 162.02  E-value: 1.00e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    19 VLVAVAFLTLIERKVLSYMQARKGPNIVGPFGLLQPMADGVKLFIKEPIR--PSSSSPALFTAtpVLALLLAITIWTPLP 96
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYgfQSRSWFSLFGV--FLLVLLVVFYCFIYG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    97 LPFSLADLNLGLLFLLALSSMAVYSILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVIILSGNYNLNTLITTQE 176
Cdd:MTH00058  92 SYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGW 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   177 PLYLIFstWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNALTTILFFNPSslnl 256
Cdd:MTH00058 172 LSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG---- 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 5835961   257 pqefFPMTLAMKTLLLsagFLWIRASYPRFRYDQLMHLLWKNFLPLTL 304
Cdd:MTH00058 246 ----FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-309 3.77e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 121.44  E-value: 3.77e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961    7 TNLTMSLSYAIPVLVAVAFLTLIERKVLSYMQARKGPnivgpfGLLQPMADGVKLFIKEPIRPSSSSPaLFTATPVLAL- 85
Cdd:COG0650   2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALa 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961   86 ----LLAITIWTPLPLPFSLADLNLGLLFLLALSSMAvysILWSGWASNSKYALIGALRAIAQTISYEVTLAIILLSVII 161
Cdd:COG0650  75 amllAALLVPVLTTGPPLSFSGDLIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALAL 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835961  162 LSGNYNLNTLITTQE---PLYLIFSTWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIM 238
Cdd:COG0650 152 LAGSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLF 231

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835961  239 LMNALTTILFFnPSSLNLPQEFFPMTLAMKTLLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 309
Cdd:COG0650 232 VLLSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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