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Conserved domains on  [gi|1242700476|ref|NP_008375|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Onchocerca volvulus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009558)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 6-289 3.92e-92

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177153  Cd Length: 284  Bit Score: 274.47  E-value: 3.92e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   6 GLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVF 85
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  86 FWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLCLSF 165
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 166 SFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSSLFFGMSFFFFYF 245
Cdd:MTH00090  161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1242700476 246 IVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLSFVVFM 289
Cdd:MTH00090  241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
 
Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 6-289 3.92e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 274.47  E-value: 3.92e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   6 GLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVF 85
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  86 FWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLCLSF 165
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 166 SFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSSLFFGMSFFFFYF 245
Cdd:MTH00090  161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1242700476 246 IVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLSFVVFM 289
Cdd:MTH00090  241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
NADHdh pfam00146
NADH dehydrogenase;
6-284 1.39e-44

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 153.01  E-value: 1.39e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   6 GLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVF 85
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  86 FWFTLPY--FFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGL-- 161
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLsl 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 162 ------CLSFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLT---- 231
Cdd:pfam00146 161 seiveaQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAvtlf 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242700476 232 --------SSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLS 284
Cdd:pfam00146 241 lggwlgpfPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLT 301
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 5-278 1.75e-36

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 132.56  E-value: 1.75e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   5 LGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMV 84
Cdd:COG1005    13 IKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPAL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  85 FFWFTLPYF--FSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLF----- 157
Cdd:COG1005    93 LAFAVIPFGpgLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLagsln 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 158 ----NKGLCLSFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGN---------L 224
Cdd:COG1005   173 lseiVEAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANmflvsalatT 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242700476 225 LYFG---------CLTSSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGF 278
Cdd:COG1005   253 LFLGgwlgpfpilPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
 
Name Accession Description Interval E-value
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 6-289 3.92e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 274.47  E-value: 3.92e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   6 GLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVF 85
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  86 FWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLCLSF 165
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 166 SFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSSLFFGMSFFFFYF 245
Cdd:MTH00090  161 SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLMLFL 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1242700476 246 IVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLSFVVFM 289
Cdd:MTH00090  241 IFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-290 1.45e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 179.34  E-value: 1.45e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGF 80
Cdd:MTH00218    2 LLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  81 VLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKG 160
Cdd:MTH00218   82 TLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 161 L--------CLSFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLT- 231
Cdd:MTH00218  162 FslegfnltQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSv 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1242700476 232 -----SSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLSFVVFML 290
Cdd:MTH00218  242 ilflgTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLS 305
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-290 6.16e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 177.27  E-value: 6.16e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGF 80
Cdd:MTH00193    2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  81 VLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKG 160
Cdd:MTH00193   82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 161 LCLSFSFCLFFFLFFFPFFCL--------VLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLT- 231
Cdd:MTH00193  162 FNLLDFMNYQKYIWFIFFSFPlfliwfvsCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFv 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1242700476 232 -----SSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLSFVVFML 290
Cdd:MTH00193  242 lmflgGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 8-288 4.57e-51

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 170.05  E-value: 4.57e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   8 LVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVFFW 87
Cdd:MTH00143    8 VFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLW 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  88 FTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLCLSFSF 167
Cdd:MTH00143   88 QLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEIS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 168 CLFFFLFFFPFFCLVLV--------DLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLT-------- 231
Cdd:MTH00143  168 ESQFSVWLGFLMFPVFLmwfvsclaETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTvvlffggs 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 232 ---SSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLSFVVF 288
Cdd:MTH00143  248 svlFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVLV 307
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-276 2.32e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 163.64  E-value: 2.32e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGF 80
Cdd:MTH00071    5 ISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMAL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  81 VLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKG 160
Cdd:MTH00071   85 TLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 161 LCLSFSFCLFFFL--------FFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLT- 231
Cdd:MTH00071  165 FSLMNFNTTQEFMwliipawpMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSt 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242700476 232 ---SSLFFGMSFFFFYFIVCMIVFS---------RSAYPRFRFDKLMGVCWFLFLPI 276
Cdd:MTH00071  245 ilfLGSTYNHLQPELSTMNLMIKASilsmlflwvRASYPRFRYDQLMHLVWKNFLPI 301
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-290 9.96e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 161.36  E-value: 9.96e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGF 80
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  81 VLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLL--VFLLFN 158
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLsiVFLVLT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 159 KGLCLSFSFCLFFFLFFFPFFCLV------LVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTS 232
Cdd:MTH00225  161 YNLFDFSYNQKYFWFMFVLFPLFFcwmismLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242700476 233 SLFFGMSFFFFYFIVC----MIVFS----RSAYPRFRFDKLMGVCWFLFLPigfyfFGLSFVVFML 290
Cdd:MTH00225  241 ILFFGGFFVTIDLFLIlkimLLAFWfiwvRGVLPRMRYDKLMSLTWKSFLP-----LSLAYLFMVL 301
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 8-276 3.12e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 160.29  E-value: 3.12e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   8 LVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVFFW 87
Cdd:MTH00195    9 LIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILW 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  88 FTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLCLSFS- 166
Cdd:MTH00195   89 VPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMv 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 167 -------FCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSSLFF--- 236
Cdd:MTH00195  169 isqgfswVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLggg 248

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1242700476 237 --GMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPI 276
Cdd:MTH00195  249 gtIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPL 290
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-276 4.11e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 157.85  E-value: 4.11e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGF 80
Cdd:MTH00134    6 ITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  81 VLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKG 160
Cdd:MTH00134   86 TLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 161 LCLSFS--------FCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTS 232
Cdd:MTH00134  166 FTLQTFntaqesiwLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242700476 233 SLFFGMSFFFFY-------------FIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPI 276
Cdd:MTH00134  246 ILFLGASHIPTLpelttinlmtkaaLLSVVFLWVRASYPRFRYDQLMHLVWKNFLPL 302
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 3-276 4.37e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 154.78  E-value: 4.37e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   3 YYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVL 82
Cdd:MTH00104    2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  83 MVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLC 162
Cdd:MTH00104   82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 163 LSFSFCLFFFLFFFPF--------FCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSSL 234
Cdd:MTH00104  162 LSTLITTQEHLWLIFPswplammwFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1242700476 235 FFGMSFFFFYFIVCMIVFS-------------RSAYPRFRFDKLMGVCWFLFLPI 276
Cdd:MTH00104  242 FLGAFHNPYMPELYTTNFTiktllltilflwiRASYPRFRYDQLMHLLWKNFLPL 296
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-276 1.09e-44

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 153.90  E-value: 1.09e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGF 80
Cdd:MTH00111    5 LLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILAL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  81 VLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKG 160
Cdd:MTH00111   85 LLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 161 LCLSFSFCLFFFLFFFPF--------FCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTS 232
Cdd:MTH00111  165 YTLQTLATTQEPLWLIFSswplammwYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTT 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242700476 233 SLF----FGMSFFFFYFIVCMI---------VFSRSAYPRFRFDKLMGVCWFLFLPI 276
Cdd:MTH00111  245 ILFlnpsTLNLPPELFTINLMTktllltsgfLWIRASYPRFRYDQLMHLLWKQFLPL 301
NADHdh pfam00146
NADH dehydrogenase;
6-284 1.39e-44

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 153.01  E-value: 1.39e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   6 GLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVF 85
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  86 FWFTLPY--FFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGL-- 161
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLsl 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 162 ------CLSFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLT---- 231
Cdd:pfam00146 161 seiveaQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAvtlf 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242700476 232 --------SSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGLS 284
Cdd:pfam00146 241 lggwlgpfPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLT 301
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 2-288 1.97e-40

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 142.81  E-value: 1.97e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   2 FYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFV 81
Cdd:MTH00040    5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  82 LMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGL 161
Cdd:MTH00040   85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 162 CLSFSFCLFFFLFFFPF--------FCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGN---------L 224
Cdd:MTH00040  165 SLSSISNSQNGSWLLFPclplfyiwFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANiifmnllsvI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1242700476 225 LYFGCLTSSLFFGMSFFFFYFI-----VCMIVFSRSAYPRFRFDKLMGVCWFLFLP--IGFYFFGLSFVVF 288
Cdd:MTH00040  245 LFLGGGSPFNEIFPINIIIVGIkttflVFLFLWVRASYPRFRYDQLMFLTWKNYLPlsIGLLIFYLLLLSL 315
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 3-276 1.79e-37

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 134.91  E-value: 1.79e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   3 YYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVL 82
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  83 MVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLL------ 156
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLilqtfs 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 157 FNKGLCLSFSFCLFFFL-FFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSSLF 235
Cdd:MTH00010  165 FSKIIMSQYSWILLMIIpLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFF 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1242700476 236 FGMSFFFFYFIVCMI----------VFSRSAYPRFRFDKLMGVCWFLFLPI 276
Cdd:MTH00010  245 TSFIPSIFISDLMLIlktvflaflfIWIRATFPRMRYDRLMNLTWKSFLPM 295
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 5-278 1.75e-36

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 132.56  E-value: 1.75e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   5 LGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMV 84
Cdd:COG1005    13 IKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPAL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  85 FFWFTLPYF--FSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLF----- 157
Cdd:COG1005    93 LAFAVIPFGpgLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLagsln 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 158 ----NKGLCLSFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGN---------L 224
Cdd:COG1005   173 lseiVEAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANmflvsalatT 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242700476 225 LYFG---------CLTSSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGF 278
Cdd:COG1005   253 LFLGgwlgpfpilPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-288 9.70e-36

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 130.63  E-value: 9.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGF 80
Cdd:MTH00216    6 IFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  81 VLMVFFWFTLPYFFSFL--SFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFN 158
Cdd:MTH00216   86 TLALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 159 KGLCL---------SFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGC 229
Cdd:MTH00216  166 GSLSIteivlaqnnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSC 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242700476 230 LTSSLFF--------------GMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPigfyfFGLSFVVF 288
Cdd:MTH00216  246 LTTILFLggwlspikyfkggaGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLP-----LSLGVVIF 313
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
8-278 2.26e-35

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 129.54  E-value: 2.26e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   8 LVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVFFW 87
Cdd:PRK06076   17 VVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAW 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  88 FTLPYF--FSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLL-VFLLFNKGLCL- 163
Cdd:PRK06076   97 AVIPFGpeLVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLaVVLLAGSLNLSd 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 164 ------SFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGN---------LLYFG 228
Cdd:PRK06076  177 iveaqfLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINmilvsalitTLFLG 256

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1242700476 229 -------CLTSSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGF 278
Cdd:PRK06076  257 gwlppfpLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 7-283 9.30e-33

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 122.53  E-value: 9.30e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   7 LLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVFF 86
Cdd:MTH00054    8 ILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  87 WFTLPY--FFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLCLS 164
Cdd:MTH00054   88 WGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLT 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 165 --------FSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLL----------- 225
Cdd:MTH00054  168 eivlaqknIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIIlmstfgvilfl 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242700476 226 -----YFGCLTSSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPIGFYFFGL 283
Cdd:MTH00054  248 ggwlvISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 7-276 3.86e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 108.18  E-value: 3.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   7 LLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLCFSSWLSFLFMPICGFVLMVFF 86
Cdd:MTH00029   13 LLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  87 W--FTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNKGLCLS 164
Cdd:MTH00029   93 WaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNIS 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 165 --------FSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSSLFF 236
Cdd:MTH00029  173 eivisqrsVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFL 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242700476 237 -----------------------------GMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFLPI 276
Cdd:MTH00029  253 ggwlspldgiptppeafsifeqiasskssFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPL 321
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-270 2.71e-19

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 85.36  E-value: 2.71e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   1 MFYYLGLLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLK-KEQLLLCFSSWLSfLFMPICG 79
Cdd:MTH00058    1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVkFKVYGFQSRSWFS-LFGVFLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  80 FVLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLLVFLLFNK 159
Cdd:MTH00058   80 VLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 160 GLCLSFSFCLFFFLFF------FPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGNLLYFGCLTSS 233
Cdd:MTH00058  160 SYSLVDFYYSGWLSVLlfpliyILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSV 239

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1242700476 234 LFFGMSFFFFYFIVCMIVF--SRSAYPRFRFDKLMGVCW 270
Cdd:MTH00058  240 LFFGGGFVSIMLLFHLLFFmwARATLPRVRYDYFVNFFW 278
ndhA CHL00032
NADH dehydrogenase subunit 1
 7-225 9.05e-12

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 64.59  E-value: 9.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476   7 LLVMIVFILQAIAFLVLLERHFLGGSQCRVGPNKVGYCGVLQALFDGLKLLKKEQLLLcfSSWLSFLFMpiCGFVLMVff 86
Cdd:CHL00032   33 ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLP--SRGDIRLFS--IGPSIAV-- 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  87 wftLPYFFSFLSFEYSGVFLFCLMGVSVYF-----------IMLSGVFSGSKYSLIGGLRACVQSYSYEIAFSIYLL-VF 154
Cdd:CHL00032  107 ---ISILLSYLVIPFGYHLVLADLSIGVFLwiaissiapigLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLsIS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 155 LLFNKGLCLSFSFCLFFFLF-----------FFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGFAALFLGEYGN 223
Cdd:CHL00032  184 LLSNSLSTVDIVEAQSKYGFwgwnlwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLN 263


                  ..
gi 1242700476 224 LL 225
Cdd:CHL00032  264 LL 265
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
67-274 4.70e-08

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 53.26  E-value: 4.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476  67 SSWLsFLFMPICGF--VLMVFFWFTLPYFFSFLSFEYSGVFLFCLMGVSVYFIMLSGVFSGSKYSLIGGLRACVQSYSYE 144
Cdd:COG0650    61 ASWL-FRAAPYVALaaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAE 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242700476 145 IAFSIYLLVFLLFNK-----------GLCLSFSFCLFFFLFFFPFFCLVLVDLHRAPFDLSECESELVSGFNVEYSGVGF 213
Cdd:COG0650   140 PPLLLVLFALALLAGstslsdivayqAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHL 219

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1242700476 214 AALFLGEYGNLLYFGCL------------TSSLFFGMSFFFFYFIVCMIVFSRSAYPRFRFDKLMGVCWFLFL 274
Cdd:COG0650   220 ALLELAAALKLFVLLSLfvnlflpwgialTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFL 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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