|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
41-334 |
8.41e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 103.66 E-value: 8.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 41 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 120
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 121 LDEAEDDFKKVLKSNPsenEEKEAQSQLIKSDEMQrlrsqalnafgsGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 200
Cdd:COG2956 92 LDRAEELLEKLLELDP---DDAEALRLLAEIYEQE------------GDWEKAIEVLERLLKLGPENAHAYCELAELYLE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 201 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHkrcfahykqVKKLNKLIESAEELir 280
Cdd:COG2956 157 QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY---------LPALPRLAELYEKL-- 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 5453980 281 dGRYTDATSKYESVMKTEPSIAEYtvrskERICHCFSKDEKPVEAIRVCSEVLQ 334
Cdd:COG2956 226 -GDPEEALELLRKALELDPSDDLL-----LALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
36-281 |
1.05e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.88 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 115
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 116 LKQGKLDEAEDDFKKVLKSNPseneekeaqsqliksDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 195
Cdd:COG2956 121 EQEGDWEKAIEVLERLLKLGP---------------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 196 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLiESA 275
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL-EAA 264
|
....*.
gi 5453980 276 EELIRD 281
Cdd:COG2956 265 LALLER 270
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
100-394 |
1.87e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.03 E-value: 1.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 100 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPsenEEKEAQSQLIKSDEMQrlrsqalnafgsGDYTAAIAFLDK 179
Cdd:COG2956 3 LPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDP---ETVEAHLALGNLYRRR------------GEYDRAIRIHQK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 180 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHkrcf 259
Cdd:COG2956 68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 260 AHYkqvkklnkLIESAEELIRDGRYTDATSKYESVMKTEPSiaeyTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN 339
Cdd:COG2956 144 AHA--------YCELAELYLEQGDYDEAIEALEKALKLDPD----CARALLLLAELYLEQGDYEEAIAALERALEQDPDY 211
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5453980 340 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI---------REGLEKAQRLLKQSQKRD 394
Cdd:COG2956 212 LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLlaladllerKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
74-366 |
5.21e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 92.87 E-value: 5.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 74 YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPsenEEKEAQSQLiksde 153
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP---DRAEALLEL----- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 154 mqrlrsqALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 233
Cdd:COG2956 83 -------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 234 QLGDHELSLSEVRECLKLDQDHKRcfAHYKQvkklnkliesAEELIRDGRYTDATSKYESVMKTEPSIAEYtvrsKERIC 313
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCAR--ALLLL----------AELYLEQGDYEEAIAALERALEQDPDYLPA----LPRLA 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 5453980 314 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKdRAEAYLIEEMYDEAIQDYETA 366
Cdd:COG2956 220 ELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQ 271
|
|
| PRK14278 |
PRK14278 |
chaperone protein DnaJ; Provisional |
393-478 |
2.45e-20 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237654 [Multi-domain] Cd Length: 378 Bit Score: 92.81 E-value: 2.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLdaeSQQG 472
Cdd:PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPD----VNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPL---ESAG 75
|
....*.
gi 5453980 473 GGGNPF 478
Cdd:PRK14278 76 GGGGGF 81
|
|
| DnaJ_bact |
TIGR02349 |
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ... |
394-495 |
4.38e-19 |
|
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Pssm-ID: 274090 [Multi-domain] Cd Length: 354 Bit Score: 88.43 E-value: 4.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDplDAESQQG 472
Cdd:TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD----KEAEEKFKEINEAYEVLSDPEKRAQYDQfGHA--GFNGGGG 74
|
90 100
....*....|....*....|...
gi 5453980 473 GGGNPFhrswnSWQGFNPFSSGG 495
Cdd:TIGR02349 75 GGGGGF-----NGFDIGFFGDFG 92
|
|
| DnaJ |
pfam00226 |
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ... |
394-459 |
4.38e-19 |
|
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.
Pssm-ID: 395170 [Multi-domain] Cd Length: 63 Bit Score: 80.98 E-value: 4.38e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:pfam00226 1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDkNPGD----PEAEEKFKEINEAYEVLSDPEKRAIYD 63
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
36-214 |
1.08e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.44 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 115
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 116 LKQGKLDEAEDDFKKVLKSNPseneekeaqsqliksDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 195
Cdd:COG0457 87 QALGRYEEALEDYDKALELDP---------------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151
|
170
....*....|....*....
gi 5453980 196 ECFIKEGEPRKAISDLKAA 214
Cdd:COG0457 152 IALEKLGRYEEALELLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
67-255 |
1.84e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 84.67 E-value: 1.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 67 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPseneekeaqs 146
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDP---------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 147 qliksDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY 226
Cdd:COG0457 74 -----DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180
....*....|....*....|....*....
gi 5453980 227 KISTLYYQLGDHELSLSEVRECLKLDQDH 255
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| PRK14291 |
PRK14291 |
chaperone protein DnaJ; Provisional |
391-480 |
2.20e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237661 [Multi-domain] Cd Length: 382 Bit Score: 86.75 E-value: 2.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAES 469
Cdd:PRK14291 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN----PEAEEKFKEINEAYQVLSDPEKRKLYDQfGHAAFSGSG 76
|
90
....*....|.
gi 5453980 470 QQGGGGNPFHR 480
Cdd:PRK14291 77 QQQQGQEGFSD 87
|
|
| PRK14282 |
PRK14282 |
chaperone protein DnaJ; Provisional |
391-474 |
2.68e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184603 [Multi-domain] Cd Length: 369 Bit Score: 86.39 E-value: 2.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD----GEDPLD 466
Cdd:PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPD--RHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRfgyvGEQPPY 79
|
....*...
gi 5453980 467 AESQQGGG 474
Cdd:PRK14282 80 QETESGGG 87
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
40-252 |
1.20e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.85 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 119
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 120 KLDEAEDDFKKVLKSNPseneekeaqsqliKSDEMQRLRSQALNAfgSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 199
Cdd:COG2956 159 DYDEAIEALEKALKLDP-------------DCARALLLLAELYLE--QGDYEEAIAALERALEQDPDYLPALPRLAELYE 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 5453980 200 KEGEPRKAISDLKAASKLKNDNTEAFYkISTLYYQLGDHELSLSEVRECLKLD 252
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-182 |
1.55e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 85.82 E-value: 1.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 18 LLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 97
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 98 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPsenEEKEAQSQLIksdemqrlrsQALnaFGSGDYTAAIAFL 177
Cdd:COG3914 139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP---DNAEALNNLG----------NAL--QDLGRLEEAIAAY 203
|
....*
gi 5453980 178 DKILE 182
Cdd:COG3914 204 RRALE 208
|
|
| PRK14277 |
PRK14277 |
chaperone protein DnaJ; Provisional |
391-501 |
2.21e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184599 [Multi-domain] Cd Length: 386 Bit Score: 83.70 E-value: 2.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAE 468
Cdd:PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDlNPGD----KEAEQKFKEINEAYEILSDPQKRAQYDQfGHAAFDPG 78
|
90 100 110
....*....|....*....|....*....|...
gi 5453980 469 SQQGGGgnpFhrswnSWQGFnpfsSGGPFRFKF 501
Cdd:PRK14277 79 GFGQGG---F-----GQGGF----GGGGFDFDF 99
|
|
| DnaJ |
COG0484 |
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ... |
394-471 |
4.86e-17 |
|
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440252 [Multi-domain] Cd Length: 139 Bit Score: 77.82 E-value: 4.86e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQ 471
Cdd:COG0484 1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG---DPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLAT 75
|
|
| PRK14290 |
PRK14290 |
chaperone protein DnaJ; Provisional |
393-492 |
7.88e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172778 [Multi-domain] Cd Length: 365 Bit Score: 81.90 E-value: 7.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDgedplDAESQQG 472
Cdd:PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPD--LHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ-----TGTVDFG 75
|
90 100
....*....|....*....|
gi 5453980 473 GGGNPFhrswnSWQGFNPFS 492
Cdd:PRK14290 76 AGGSNF-----NWDNFTHFS 90
|
|
| PRK14280 |
PRK14280 |
molecular chaperone DnaJ; |
392-499 |
8.72e-17 |
|
molecular chaperone DnaJ;
Pssm-ID: 237656 [Multi-domain] Cd Length: 376 Bit Score: 82.08 E-value: 8.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD--GEDPldaes 469
Cdd:PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPD----INKEEGADEKFKEISEAYEVLSDDQKRAQYDQfgHAGP----- 73
|
90 100 110
....*....|....*....|....*....|
gi 5453980 470 QQGGGGnpfhrswnswQGFNPFSSGGPFRF 499
Cdd:PRK14280 74 NQGFGG----------GGFGGGDFGGGFGF 93
|
|
| PRK10767 |
PRK10767 |
chaperone protein DnaJ; Provisional |
392-492 |
8.78e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 236757 [Multi-domain] Cd Length: 371 Bit Score: 81.73 E-value: 8.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDaesq 470
Cdd:PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG---DKEAEEKFKEIKEAYEVLSDPQKRAAYDQyGHAAFE---- 75
|
90 100
....*....|....*....|..
gi 5453980 471 QGGGGNPFhrswnswQGFNPFS 492
Cdd:PRK10767 76 QGGGGGGF-------GGGGGFG 90
|
|
| DnaJ |
smart00271 |
DnaJ molecular chaperone homology domain; |
393-453 |
2.47e-16 |
|
DnaJ molecular chaperone homology domain;
Pssm-ID: 197617 [Multi-domain] Cd Length: 60 Bit Score: 73.04 E-value: 2.47e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeEKKKAEKKFIDIAAAKEVLSDPE 453
Cdd:smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG--DKEEAEEKFKEINEAYEVLSDPE 59
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
40-182 |
9.39e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 76.49 E-value: 9.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 119
Cdd:COG4785 76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 120 KLDEAEDDFKKVLKSNPSENE----EKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILE 182
Cdd:COG4785 156 RYELAIADLEKALELDPNDPEralwLYLAERKLDPEKALALLLEDWATAYLLqGDTEEARELFKLALA 223
|
|
| PRK14283 |
PRK14283 |
chaperone protein DnaJ; Provisional |
390-498 |
2.66e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184604 [Multi-domain] Cd Length: 378 Bit Score: 77.56 E-value: 2.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAE 468
Cdd:PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD----VSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQfGHAGMDGF 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 5453980 469 SQQ----------------GGGGNPFhrswnSWQGFNPFSSGGPFR 498
Cdd:PRK14283 78 SQEdifnninfedifqgfgFGIGNIF-----DMFGFGGGSRHGPQR 118
|
|
| terminal_TopJ |
NF037946 |
terminal organelle assembly protein TopJ; |
390-466 |
3.15e-15 |
|
terminal organelle assembly protein TopJ;
Pssm-ID: 468284 [Multi-domain] Cd Length: 440 Bit Score: 77.55 E-value: 3.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD-------DGE 462
Cdd:NF037946 2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDR----NKAPDAAEIFAEINEAYEVLSNPEKRANYDkyghdgvDGE 77
|
....
gi 5453980 463 DPLD 466
Cdd:NF037946 78 GGFG 81
|
|
| PRK14294 |
PRK14294 |
chaperone protein DnaJ; Provisional |
390-475 |
3.68e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237664 [Multi-domain] Cd Length: 366 Bit Score: 77.11 E-value: 3.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDA 467
Cdd:PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDrNPGD----KEAEELFKEAAEAYEVLSDPKKRGIYDQyGHEGLSG 76
|
....*...
gi 5453980 468 ESQQGGGG 475
Cdd:PRK14294 77 TGFSGFSG 84
|
|
| PRK14281 |
PRK14281 |
chaperone protein DnaJ; Provisional |
392-478 |
4.97e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237657 [Multi-domain] Cd Length: 397 Bit Score: 76.77 E-value: 4.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQ 470
Cdd:PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDkNPDN----KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSA 77
|
....*...
gi 5453980 471 QGGGGNPF 478
Cdd:PRK14281 78 ASGGGPGY 85
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
98-284 |
5.48e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 74.66 E-value: 5.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 98 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPseneekeaqsqliksDEMQRLRSQALNAFGSGDYTAAIAFL 177
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP---------------DDAEALYNLGLAYLRLGRYEEALADY 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 178 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 257
Cdd:COG0457 66 EQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180
....*....|....*....|....*..
gi 5453980 258 CFAHYKQVKKLNKLIESAEELIRDGRY 284
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
35-136 |
6.33e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.76 E-value: 6.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 35 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 114
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100
....*....|....*....|..
gi 5453980 115 LLKQGKLDEAEDDFKKVLKSNP 136
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDP 103
|
|
| DnaJ |
cd06257 |
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ... |
394-451 |
7.20e-15 |
|
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Pssm-ID: 99751 [Multi-domain] Cd Length: 55 Bit Score: 68.73 E-value: 7.20e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSD 451
Cdd:cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD---DPEAEEKFKEINEAYEVLSD 55
|
|
| PRK14301 |
PRK14301 |
chaperone protein DnaJ; Provisional |
392-498 |
8.93e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237668 [Multi-domain] Cd Length: 373 Bit Score: 75.93 E-value: 8.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLdaes 469
Cdd:PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDrNPDN----PEAEQKFKEAAEAYEVLRDAEKRARYDRfGHAGV---- 74
|
90 100 110
....*....|....*....|....*....|....*.
gi 5453980 470 QQGGGGNPFHRSWNSWQGFNP-------FSSGGPFR 498
Cdd:PRK14301 75 NGNGGFGGFSSAEDIFSHFSDifgdlfgFSGGGSRR 110
|
|
| PRK14293 |
PRK14293 |
molecular chaperone DnaJ; |
393-459 |
1.61e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237663 [Multi-domain] Cd Length: 374 Bit Score: 75.03 E-value: 1.61e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPD----VNKEPGAEDRFKEINRAYEVLSDPETRARYD 65
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
31-394 |
1.85e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.28 E-value: 1.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 31 CGVNaDVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 110
Cdd:TIGR02917 17 CGDQ-SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 111 RGHLLLKQGKLDEAEDDF-KKVLKSNPSENEEKEAQS----QLIKSDEMQRLRSQALNA--------FGS-------GDY 170
Cdd:TIGR02917 96 LARAYLLQGKFQQVLDELpGKTLLDDEGAAELLALRGlaylGLGQLELAQKSYEQALAIdprslyakLGLaqlalaeNRF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 171 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 250
Cdd:TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 251 LDQDHKrcFAHYkqvkkLNKLIEsaeelIRDGRYTDATSKYESVMKTEPS---------IAEYTVRSKERICHCFSKdek 321
Cdd:TIGR02917 256 KAPNSP--LAHY-----LKALVD-----FQKKNYEDARETLQDALKSAPEylpalllagASEYQLGNLEQAYQYLNQ--- 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 322 pveairvcseVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL----------EKAQRLLKQSQ 391
Cdd:TIGR02917 321 ----------ILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLgeaylalgdfEKAAEYLAKAT 390
|
...
gi 5453980 392 KRD 394
Cdd:TIGR02917 391 ELD 393
|
|
| PRK14298 |
PRK14298 |
chaperone protein DnaJ; Provisional |
390-459 |
3.03e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184612 [Multi-domain] Cd Length: 377 Bit Score: 74.11 E-value: 3.03e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDK----NKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67
|
|
| PRK14289 |
PRK14289 |
molecular chaperone DnaJ; |
390-501 |
3.25e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237660 [Multi-domain] Cd Length: 386 Bit Score: 74.10 E-value: 3.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAES 469
Cdd:PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPD---KNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGA 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 5453980 470 QQGGG---------------GNPFHRSWNSWQGFNPFSSGGPFRFKF 501
Cdd:PRK14289 79 AGGGGfsgegmsmedifsmfGDIFGGHGGGFGGFGGFGGGGSQQRVF 125
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
41-427 |
4.28e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.12 E-value: 4.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 41 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 120
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 121 LDEAE----------------------------------DDFKKVLKSNPSE--------------NEEKEAQSQL---- 148
Cdd:TIGR02917 243 FEEAEkhadallkkapnsplahylkalvdfqkknyedarETLQDALKSAPEYlpalllagaseyqlGNLEQAYQYLnqil 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 149 -IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 227
Cdd:TIGR02917 323 kYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 228 ISTLYYQLGDHELSLSEVRECLKLDQDHKRC----FAHYKQVKKLNKLIESAEELIR------------------DGRYT 285
Cdd:TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPELGRAdlllILSYLRSGQFDKALAAAKKLEKkqpdnaslhnllgaiylgKGDLA 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 286 DATSKYESVMKTEPsiAEYTVRSKERICHcfSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 365
Cdd:TIGR02917 483 KAREAFEKALSIEP--DFFPAAANLARID--IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5453980 366 AQEHNENDQQIREGLEKAQRLLKQSQK------------RD---YYKILG--VKRNAKKQEIIKAYRKLALQwHPDNFQ 427
Cdd:TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKalailneaadaaPDspeAWLMLGraQLAAGDLNKAVSSFKKLLAL-QPDSAL 636
|
|
| PRK14295 |
PRK14295 |
molecular chaperone DnaJ; |
392-496 |
4.48e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237665 [Multi-domain] Cd Length: 389 Bit Score: 73.73 E-value: 4.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDdgedplDAESQ 470
Cdd:PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDaNKGD----AKAEERFKEISEAYDVLSDEKKRKEYD------EARSL 77
|
90 100
....*....|....*....|....*.
gi 5453980 471 QGGGgnpfhrswnswqGFNPFSSGGP 496
Cdd:PRK14295 78 FGNG------------GFRPGPGGGG 91
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
35-149 |
5.37e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.64 E-value: 5.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 35 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 114
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
|
90 100 110
....*....|....*....|....*....|....*
gi 5453980 115 LLKQGKLDEAEDDFKKVLKSNPSENeekEAQSQLI 149
Cdd:COG3914 190 LQDLGRLEEAIAAYRRALELDPDNA---DAHSNLL 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
36-148 |
1.18e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 67.72 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 115
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|...
gi 5453980 116 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 148
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| PRK14297 |
PRK14297 |
molecular chaperone DnaJ; |
392-495 |
1.81e-13 |
|
molecular chaperone DnaJ;
Pssm-ID: 184611 [Multi-domain] Cd Length: 380 Bit Score: 71.74 E-value: 1.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDD--GEDPLDAES 469
Cdd:PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG---NKEAEEKFKEINEAYQVLSDPQKKAQYDQfgTADFNGAGG 79
|
90 100
....*....|....*....|....*...
gi 5453980 470 QQGGGGNPFHRSWNSWQG--FNPFSSGG 495
Cdd:PRK14297 80 FGSGGFGGFDFSDMGGFGdiFDSFFGGG 107
|
|
| PRK14300 |
PRK14300 |
chaperone protein DnaJ; Provisional |
393-495 |
1.90e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172788 [Multi-domain] Cd Length: 372 Bit Score: 71.58 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAESQQ 471
Cdd:PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDT----TDAKDAEKKFKEINAAYDVLKDEQKRAAYDRfGHDAFQNQQSR 78
|
90 100
....*....|....*....|....*...
gi 5453980 472 GGGGNP--FHRSWNSWQG--FNPFSSGG 495
Cdd:PRK14300 79 GGGGNHggFHPDINDIFGdfFSDFMGGS 106
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
43-425 |
1.97e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.81 E-value: 1.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 43 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 122
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFD 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 123 EAEDDFKKVLKS---NPS-----------ENEEKEAQSQLIKSDEMQR-----LRSQALNAFGSGDYTAAIAFLDKIL-- 181
Cdd:TIGR02917 449 KALAAAKKLEKKqpdNASlhnllgaiylgKGDLAKAREAFEKALSIEPdffpaAANLARIDIQEGNPDDAIQRFEKVLti 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 182 ----------------------EVCVW----------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 229
Cdd:TIGR02917 529 dpknlrailalaglylrtgneeEAVAWlekaaelnpqEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 230 TLYYQLGDHELSLSEVRECLKLDQD----HKRCFAHYKQVKKLNKLIESAEE-LIRDGRYTDA----TSKYESVMKTEPS 300
Cdd:TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDsalaLLLLADAYAVMKNYAKAITSLKRaLELKPDNTEAqiglAQLLLAAKRTESA 688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 301 IAEYTVRSKERICHCF---------SKDEKPVEAIRVCSEVLQMEPDNVNALKdRAEAYLIEEMYDEAIQDYETAQEHNE 371
Cdd:TIGR02917 689 KKIAKSLQKQHPKAALgfelegdlyLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHP 767
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 5453980 372 NDQQIREGLekAQRLLKQSQKRdyykilgvkrnakkqEIIKAYRKLaLQWHPDN 425
Cdd:TIGR02917 768 NDAVLRTAL--AELYLAQKDYD---------------KAIKHYQTV-VKKAPDN 803
|
|
| PRK14276 |
PRK14276 |
chaperone protein DnaJ; Provisional |
392-497 |
2.01e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237653 [Multi-domain] Cd Length: 380 Bit Score: 71.66 E-value: 2.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GedPLDAESQ 470
Cdd:PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPD----INKEPGAEEKYKEVQEAYETLSDPQKRAAYDQyG--AAGANGG 76
|
90 100
....*....|....*....|....*..
gi 5453980 471 QGGGGNPFhrswnswQGFNPFSSGGPF 497
Cdd:PRK14276 77 FGGGAGGF-------GGFDGSGGFGGF 96
|
|
| PRK14299 |
PRK14299 |
chaperone protein DnaJ; Provisional |
392-459 |
2.69e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237667 [Multi-domain] Cd Length: 291 Bit Score: 70.35 E-value: 2.69e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPD----VNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66
|
|
| SEC63 |
COG5407 |
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ... |
394-457 |
3.25e-13 |
|
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 444165 [Multi-domain] Cd Length: 61 Bit Score: 64.25 E-value: 3.25e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKK 457
Cdd:COG5407 1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDrNKGD----PKAEERFKEINEAYELLSDAEKRAR 61
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
55-196 |
3.33e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.57 E-value: 3.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 55 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 134
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5453980 135 NPsenEEKEAQSQLiksdemqrlrsqALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 196
Cdd:COG4235 81 DP---DNPEALYLL------------GLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
36-182 |
5.01e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.88 E-value: 5.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 115
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5453980 116 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 182
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
36-138 |
8.22e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.60 E-value: 8.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 115
Cdd:COG4783 37 NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY 116
|
90 100
....*....|....*....|...
gi 5453980 116 LKQGKLDEAEDDFKKVLKSNPSE 138
Cdd:COG4783 117 RALGRPDEAIAALEKALELDPDD 139
|
|
| PRK14284 |
PRK14284 |
chaperone protein DnaJ; Provisional |
394-475 |
1.67e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237658 [Multi-domain] Cd Length: 391 Bit Score: 69.10 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GED-PLDAESQQ 471
Cdd:PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPD---KNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRyGKDgPFAGAGGF 78
|
....
gi 5453980 472 GGGG 475
Cdd:PRK14284 79 GGAG 82
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
68-224 |
1.98e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.48 E-value: 1.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 68 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPseneekeaqsq 147
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDP----------- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 148 liksDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAElRELRAECFIKEGEPRKAISDLKA----ASKLKNDNTE 223
Cdd:COG4785 139 ----DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE-RALWLYLAERKLDPEKALALLLEdwatAYLLQGDTEE 213
|
.
gi 5453980 224 A 224
Cdd:COG4785 214 A 214
|
|
| CbpA |
COG2214 |
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; |
393-459 |
2.13e-12 |
|
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
Pssm-ID: 441816 [Multi-domain] Cd Length: 91 Bit Score: 62.81 E-value: 2.13e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:COG2214 5 KDHYAVLGVPPDASLEEIRQAYRRLAKLLHPD--RGGELKALAEELFQRLNEAYEVLSDPERRAEYD 69
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
47-137 |
2.18e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.88 E-value: 2.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 47 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALpDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 126
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 5453980 127 DFKKVLKSNPS 137
Cdd:COG3063 81 YLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
17-426 |
2.36e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 69.73 E-value: 2.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 17 FLLVLVDLQ---YEGAECGVNADVEKHLE-LGKKLLAA------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK 86
Cdd:TIGR02917 265 YLKALVDFQkknYEDARETLQDALKSAPEyLPALLLAGaseyqlGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 87 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--------------SENEEKEAQSQLIKSD 152
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPenaaartqlgisklSQGDPSEAIADLETAA 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 153 EM--QRLRSQALNAFG---SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 227
Cdd:TIGR02917 425 QLdpELGRADLLLILSylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 228 ISTLYYQLGDHELSLSEVRECLKLDQDHkrcfahykqVKKLNKLiesAEELIRDGRYTDATSKYESVMKTEP-------S 300
Cdd:TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKN---------LRAILAL---AGLYLRTGNEEEAVAWLEKAAELNPqeiepalA 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 301 IAEYTVRSKErichcfskdekPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 380
Cdd:TIGR02917 573 LAQYYLGKGQ-----------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 5453980 381 EKAQRllkqsqkrdyykilgVKRNAKKqeIIKAYRKlALQWHPDNF 426
Cdd:TIGR02917 642 ADAYA---------------VMKNYAK--AITSLKR-ALELKPDNT 669
|
|
| termin_org_DnaJ |
TIGR03835 |
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ... |
392-468 |
2.39e-12 |
|
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274808 [Multi-domain] Cd Length: 871 Bit Score: 69.46 E-value: 2.39e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAE 468
Cdd:TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDR----NKAPDAASIFAEINEANDVLSNPKKRANYDKyGHDGVDRE 74
|
|
| PRK14279 |
PRK14279 |
molecular chaperone DnaJ; |
393-499 |
3.65e-12 |
|
molecular chaperone DnaJ;
Pssm-ID: 237655 [Multi-domain] Cd Length: 392 Bit Score: 67.84 E-value: 3.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDDgedpLDAESQQ 471
Cdd:PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDaNPGD----PAAEERFKAVSEAHDVLSDPAKRKEYDE----TRRLFAG 80
|
90 100
....*....|....*....|....*...
gi 5453980 472 GGGGNPFHRSWNSWQGFNPFSSGGPFRF 499
Cdd:PRK14279 81 GGFGGRRFDGGGGFGGFGTGGDGAEFNL 108
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
106-255 |
5.01e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.29 E-value: 5.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 106 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPsenEEKEAQSQLiksdemqrlrsqALNAFGSGDYTAAIAFLDKILEVCV 185
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALL------------GEILLQLGDLDEAIVLLHEALELDP 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 186 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 255
Cdd:COG4783 70 DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PRK14285 |
PRK14285 |
chaperone protein DnaJ; Provisional |
392-494 |
7.50e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172773 [Multi-domain] Cd Length: 365 Bit Score: 66.94 E-value: 7.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDDgedpLDAESQQ 471
Cdd:PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG---NKEAESIFKEATEAYEVLIDDNKRAQYDR----FGHTAFE 74
|
90 100
....*....|....*....|...
gi 5453980 472 GGGgnpfhrswnswqGFNPFSSG 494
Cdd:PRK14285 75 GGG------------GFEGFSGG 85
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
35-262 |
7.74e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 67.71 E-value: 7.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 35 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 114
Cdd:COG3914 8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 115 LLKQGKLDEAEDDFKKVLKSNPsenEEKEAQSQLiksdemqrlrsqALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 194
Cdd:COG3914 88 LQALGRYEEALALYRRALALNP---DNAEALFNL------------GNLLLALGRLEEALAALRRALALNPDFAEAYLNL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 195 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 262
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PTZ00037 |
PTZ00037 |
DnaJ_C chaperone protein; Provisional |
395-477 |
1.15e-11 |
|
DnaJ_C chaperone protein; Provisional
Pssm-ID: 240236 [Multi-domain] Cd Length: 421 Bit Score: 66.38 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 395 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeekkkaEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAesqQGG 473
Cdd:PTZ00037 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-------PEKFKEISRAYEVLSDPEKRKIYDEyGEEGLEG---GEQ 99
|
....
gi 5453980 474 GGNP 477
Cdd:PTZ00037 100 PADA 103
|
|
| PRK14287 |
PRK14287 |
chaperone protein DnaJ; Provisional |
392-475 |
3.58e-11 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237659 [Multi-domain] Cd Length: 371 Bit Score: 64.65 E-value: 3.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD--GEDPldaes 469
Cdd:PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPD----VNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQfgHTDP----- 73
|
....*.
gi 5453980 470 QQGGGG 475
Cdd:PRK14287 74 NQGFGG 79
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
47-136 |
3.73e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.51 E-value: 3.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 47 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 126
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 5453980 127 DFKKVLKSNP 136
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| PRK14296 |
PRK14296 |
chaperone protein DnaJ; Provisional |
391-474 |
4.46e-11 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237666 [Multi-domain] Cd Length: 372 Bit Score: 64.58 E-value: 4.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAES 469
Cdd:PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPD----LNKSPDAHDKMVEINEAADVLLDKDKRKQYDQfGHAAFDGSS 77
|
....*
gi 5453980 470 QQGGG 474
Cdd:PRK14296 78 GFSSN 82
|
|
| PRK14292 |
PRK14292 |
chaperone protein DnaJ; Provisional |
394-490 |
9.70e-11 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237662 [Multi-domain] Cd Length: 371 Bit Score: 63.37 E-value: 9.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEdpldAESQQG 472
Cdd:PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDR----NKEKGAAEKFAQINEAYAVLSDAEKRAHYDRfGT----APGAGM 74
|
90
....*....|....*...
gi 5453980 473 GGGNPFhrswnSWQGFNP 490
Cdd:PRK14292 75 PGGDPF-----GGMGFDP 87
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
41-150 |
3.09e-10 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 59.87 E-value: 3.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 41 LELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLqRGHLLLK 117
Cdd:COG2976 94 LLLAKAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKYDEALATLDAVKPEAFAALYAEL-RGDILLA 172
|
90 100 110
....*....|....*....|....*....|...
gi 5453980 118 QGKLDEAEDDFKKVLKSNPSENEekeaQSQLIK 150
Cdd:COG2976 173 QGDKAEARAAYQKALAALPEDAP----LRQLLQ 201
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
216-422 |
3.10e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.41 E-value: 3.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 216 KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCfahykqvkkLNKLIESAEELirdGRYTDATSKYESVM 295
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA---------LYNLGLAYLRL---GRYEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 296 KTEPSIAEytvrSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 375
Cdd:COG0457 70 ELDPDDAE----ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 5453980 376 IREGLEKAQRLLKQSQK--RDYYKILGVKRNAKKQEIIKAYRKLALQWH 422
Cdd:COG0457 146 ALYNLGIALEKLGRYEEalELLEKLEAAALAALLAAALGEAALALAAAE 194
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
151-280 |
4.74e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 4.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 151 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 230
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 5453980 231 LYYQLGDHELSLSEVRECLKLDQDHKRCFAH----YKQVKKLNKLIESAEELIR 280
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRlaraYRALGRPDEAIAALEKALE 134
|
|
| PRK14286 |
PRK14286 |
chaperone protein DnaJ; Provisional |
393-459 |
5.48e-10 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172774 [Multi-domain] Cd Length: 372 Bit Score: 61.16 E-value: 5.48e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG---NKESEEKFKEATEAYEILRDPKKRQAYD 67
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
43-237 |
6.04e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.02 E-value: 6.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 43 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 122
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 123 EAEDDFKKVLKSNPSEN-----------EEKEAQSQLIKSDEMQRLRSQALNAFG-------SGDYTAAIAFLDKILEVC 184
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAAlgfelegdlylRQKDYPAAIQAYRKALKRAPSSQNAIKlhrallaSGNTAEAVKTLEAWLKTH 766
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 5453980 185 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 237
Cdd:TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD 819
|
|
| PRK10266 |
PRK10266 |
curved DNA-binding protein; |
393-478 |
6.34e-09 |
|
curved DNA-binding protein;
Pssm-ID: 182347 [Multi-domain] Cd Length: 306 Bit Score: 57.14 E-value: 6.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD----GEDPLDAE 468
Cdd:PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD----VSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQlwqhRNDPQFNR 79
|
90
....*....|
gi 5453980 469 SQQGGGGNPF 478
Cdd:PRK10266 80 QFQHGDGQSF 89
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
2-351 |
8.40e-09 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 58.17 E-value: 8.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 2 VAPGSVTSRLGSVfpfllvLVDLQYEgaecgvnaDVEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRra 78
Cdd:PRK11447 91 LAPDSNAYRSSRT------TMLLSTP--------EGRQALQQARLLATTGRTEEALASYDKLFNGAPpelDLAVEYWR-- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 79 TVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSeneeKEAQSQLiksdEMQRLR 158
Cdd:PRK11447 155 LVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG----RDAAAQL----WYGQIK 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 159 SQ--------ALNA----FGSGDY-TAAIAFLD---KILEVCVWDAELRELRAecfIKEGEPRKAISDLKAASKLKNDNT 222
Cdd:PRK11447 227 DMpvsdasvaALQKylqvFSDGDSvAAARSQLAeqqKQLADPAFRARAQGLAA---VDSGQGGKAIPELQQAVRANPKDS 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 223 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRcFAHYKQVKKLNK---LIESAEELIRDGRYTDATSKYESVMKTEP 299
Cdd:PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRywlLIQQGDAALKANNLAQAERLYQQARQVDN 382
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 300 S-------IAEYTVRSKErichcfskdekPVEAIRVCSEVLQMEPDNVNALK-----------DRAEAYL 351
Cdd:PRK11447 383 TdsyavlgLGDVAMARKD-----------YAAAERYYQQALRMDPGNTNAVRglanlyrqqspEKALAFI 441
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
37-165 |
1.71e-08 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 55.27 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 37 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAarlQRGHLL 115
Cdd:COG4700 89 VQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKS---SDAHLL 165
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 116 L-----KQGKLDEAEDDFKKVLKSNPSE-------------NEEKEAQSQLiksDEMQRlRSQALNAF 165
Cdd:COG4700 166 YaraleALGDLEAAEAELEALARRYSGPearyryakflarqGRTAEAKELL---EEILD-EAKHMPKH 229
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
23-402 |
3.62e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.15 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 23 DLQYEGAECGVNADVEK---HLELGKKLL---AAGQLADALSQFHAAVD-GD--PDNYIAYYRRATVFLAMGKSKAALPD 93
Cdd:TIGR00990 274 KPRPAGLEDSNELDEETgngQLQLGLKSPeskADESYEEAARAFEKALDlGKlgEKEAIALNLRGTFKCLKGKHLEALAD 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 94 LTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLiksdemqrlrsqalnafgsgdytaa 173
Cdd:TIGR00990 354 LSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL------------------------- 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 174 iafldkilevcvwdaelrelraeCFIKeGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 253
Cdd:TIGR00990 409 -----------------------HFIK-GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 254 DHKRCFAHYkqvkklnkliesAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC---FSKDEKPVEAIRVCS 330
Cdd:TIGR00990 465 EAPDVYNYY------------GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAlalFQWKQDFIEAENLCE 532
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5453980 331 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 402
Cdd:TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQEDYPVLASK 604
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
36-125 |
1.35e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.23 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 115
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
90
....*....|
gi 5453980 116 LKQGKLDEAE 125
Cdd:COG3914 225 RQACDWEVYD 234
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
82-304 |
2.22e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.46 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 82 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEddfkKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 161
Cdd:COG3914 12 LAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAA----AAALLALAAGEAAAAAAALLLLAALLELAALL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 162 LNAfgSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 241
Cdd:COG3914 88 LQA--LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5453980 242 LSEVRECLKLDQDHKRCFAHYKQVkklnkliesaeeLIRDGRYTDATSKYESVMKTEPSIAEY 304
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNA------------LQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
168-252 |
2.76e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 2.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 168 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 247
Cdd:COG4235 31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110
|
....*
gi 5453980 248 CLKLD 252
Cdd:COG4235 111 LLALL 115
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
45-148 |
4.55e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 4.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 45 KKLLAAGQLADALSQFHAAVDGDPDNYI---AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT---AARLQRGHLLLKQ 118
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|
gi 5453980 119 GKLDEAEDDFKKVLKSNPSENEEKEAQSQL 148
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
106-252 |
7.11e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 7.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 106 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALnAFGSGDYTAAIAFLDKILEVCV 185
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNL-YNKLGDFEESLALLEQALQLDP 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5453980 186 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 252
Cdd:COG5010 86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
271-392 |
7.91e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.26 E-value: 7.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 271 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTvrskERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 350
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAF----ALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 5453980 351 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 392
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
237-459 |
8.81e-07 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 51.71 E-value: 8.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 237 DHELSlsevrECLKLDQDhkRCFAHYKQvKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV-RSKERICHC 315
Cdd:PTZ00341 402 DDDSS-----DALYTDED--LLFDLEKQ-KYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNAdDSGEQQSDD 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 316 FSKDEKPVEAI------------RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-NENDQQIREGLEK 382
Cdd:PTZ00341 474 ESGEHQSVNEIveeqsvnehveePTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHvEEEISTAEEHIEE 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 383 AQRLLKQSQKRD---------YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQneeeKKKAEKKFIDIAAAKEVLSDPE 453
Cdd:PTZ00341 554 PASDVQQDSEAAptieipdtlFYDILGVGVNADMKEISERYFKLAENYYPPKRS----GNEGFHKFKKINEAYQILGDID 629
|
....*.
gi 5453980 454 MRKKFD 459
Cdd:PTZ00341 630 KKKMYN 635
|
|
| DjlA |
COG1076 |
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones]; |
391-426 |
1.40e-06 |
|
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440694 [Multi-domain] Cd Length: 75 Bit Score: 45.94 E-value: 1.40e-06
10 20 30
....*....|....*....|....*....|....*.
gi 5453980 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 426
Cdd:COG1076 2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDRL 37
|
|
| TPR_21 |
pfam09976 |
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat. |
41-132 |
1.87e-06 |
|
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
Pssm-ID: 430959 [Multi-domain] Cd Length: 194 Bit Score: 48.35 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 41 LELGKKLLAAGQLADALSQFHAAVDGDPDNY---IAYYRRATVFLAMGKSKAALPDLTKVIQlkMDFTAARLQ-RGHLLL 116
Cdd:pfam09976 80 LLLAKAAVEAGDLAAAKAQLEWVADNAKDEAlkaLARLRLARVLLAQGKYDEALKTLDAVTP--AAFAALYAElRGDILV 157
|
90
....*....|....*.
gi 5453980 117 KQGKLDEAEDDFKKVL 132
Cdd:pfam09976 158 AQGKTDEARAAYQAAL 173
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
99-255 |
3.63e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.99 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 99 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG-----SGDYTAA 173
Cdd:COG4785 13 ALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGvaydsLGDYDLA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 174 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 253
Cdd:COG4785 93 IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP 172
|
..
gi 5453980 254 DH 255
Cdd:COG4785 173 ND 174
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
138-377 |
3.66e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.61 E-value: 3.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 138 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 217
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 218 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRcfAHYKQVKKLNKLiesaeelirdGRYTdatskyesvmkt 297
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE--AYLNLGEALRRL----------GRLE------------ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 298 epsiaeytvrskerichcfskdekpvEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 377
Cdd:COG3914 164 --------------------------EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
80-182 |
6.83e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 6.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 80 VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEdDFKKVLKSNPsenEEKEAQSQLiksdemqrlrs 159
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDP---NNAEALLNL----------- 65
|
90 100
....*....|....*....|...
gi 5453980 160 qALNAFGSGDYTAAIAFLDKILE 182
Cdd:COG3063 66 -AELLLELGDYDEALAYLERALE 87
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
315-389 |
7.09e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 7.09e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5453980 315 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 389
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
47-253 |
1.29e-05 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 46.22 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 47 LLAAGQ-LADALSQFHAAVDGDPDNYIAYYR-RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 124
Cdd:NF040959 11 LLVSGRiLNNMVNGYNRLFSLSDRDRAKMYRnKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 125 EDDFKKVLKSNPSEneekeAQSQLIKSDEMQRLRsqalnafgsgDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 204
Cdd:NF040959 91 IKVLEKVLSLAPDH-----VKAAYRKGVALLKIK----------DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQY 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 5453980 205 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 253
Cdd:NF040959 156 DKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELEE 204
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
18-182 |
1.49e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 18 LLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 97
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 98 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPsenEEKEAQSQLiksdemqrlrsqALNAFGSGDYTAAIAFL 177
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP---DNPNAYSNL------------AALLLSLGQDDEAKAAL 145
|
....*
gi 5453980 178 DKILE 182
Cdd:COG5010 146 QRALG 150
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
172-299 |
2.61e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 172 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 251
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 5453980 252 DQDHKRcfAHYkqvkklnkliESAEELIRDGRYTDATSKYESVMKTEP 299
Cdd:COG4235 81 DPDNPE--ALY----------LLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| djlA |
PRK09430 |
co-chaperone DjlA; |
394-424 |
2.84e-05 |
|
co-chaperone DjlA;
Pssm-ID: 236512 [Multi-domain] Cd Length: 267 Bit Score: 45.57 E-value: 2.84e-05
10 20 30
....*....|....*....|....*....|.
gi 5453980 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD 424
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
275-383 |
3.59e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 275 AEELIRDGRYTDATSKYESVMKTEPSIAEYtvrsKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 354
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADA----LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100 110
....*....|....*....|....*....|..
gi 5453980 355 MYDEAIQDYETAQEHNEND---QQIREGLEKA 383
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
201-427 |
4.41e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.14 E-value: 4.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 201 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK----RCFAHYKQVKKLNKLIESAE 276
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALaageAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 277 ELIRDGRYTDATSKYESVMKTEPSIAEytvrSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 356
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5453980 357 DEAIQDYETAQEHNENDQQIREGLekAQRLlkQSQKRDyykilgvkrnakkQEIIKAYRKlALQWHPDNFQ 427
Cdd:COG3914 163 EEAIAALRRALELDPDNAEALNNL--GNAL--QDLGRL-------------EEAIAAYRR-ALELDPDNAD 215
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
324-394 |
1.00e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 324 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL----------EKAQRLLKQSQKR 393
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLaeallaagdtEEAEELLERALAL 80
|
.
gi 5453980 394 D 394
Cdd:COG4235 81 D 81
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
36-165 |
3.11e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.30 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 115
Cdd:COG0457 109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 5453980 116 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 165
Cdd:COG0457 189 ALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
197-303 |
5.05e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 197 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLsEVRECLKLDQDHKRCFAHYkqvkklnkliesAE 276
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNL------------AE 67
|
90 100
....*....|....*....|....*..
gi 5453980 277 ELIRDGRYTDATSKYESVMKTEPSIAE 303
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
324-377 |
6.21e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 6.21e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 5453980 324 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 377
Cdd:COG4785 91 LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
315-394 |
7.54e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 315 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQdYETAQEHNENDQQIREGL----------EKAQ 384
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLaelllelgdyDEAL 79
|
90
....*....|
gi 5453980 385 RLLKQSQKRD 394
Cdd:COG3063 80 AYLERALELD 89
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
107-137 |
7.70e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 7.70e-04
10 20 30
....*....|....*....|....*....|.
gi 5453980 107 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 137
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
47-254 |
8.02e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.43 E-value: 8.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 47 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALpDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA-- 124
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL-ELLPALRKHKALSAEEAQALERRAYLGLLRQAar 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 125 -EDDFKKVLKSNPSE------------------NEEKEAQSQLIKSDEmQRLRSQALNAFG---SGDYTAAIAFLDKILE 182
Cdd:COG3071 174 dAEALKALWKALPRAerrdpelaaayaralialGDHDEAERLLREALK-RQWDPRLVRLYGrlqGGDPAKQLKRAEKWLK 252
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5453980 183 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDnTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 254
Cdd:COG3071 253 KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
144-280 |
1.08e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 144 AQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 223
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 5453980 224 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 280
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
340-373 |
1.28e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 1.28e-03
10 20 30
....*....|....*....|....*....|....
gi 5453980 340 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 373
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
43-238 |
1.36e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.61 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 43 LGKKLLAAGQLADALSQFHAAVD---GDPDNYIAYyrraTVFLA-MGKSKAALPDLTKVIQLK----MDFTAARLQRGHL 114
Cdd:PRK11447 501 LAQDLRQAGQRSQADALMRRLAQqkpNDPEQVYAY----GLYLSgSDRDRAALAHLNTLPRAQwnsnIQELAQRLQSDQV 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 115 LLKQGKLDEAEDdfkkvlksnpseneEKEAQSQLIKSDEMQR-LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 193
Cdd:PRK11447 577 LETANRLRDSGK--------------EAEAEALLRQQPPSTRiDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLG 642
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 5453980 194 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 238
Cdd:PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
109-182 |
1.43e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.32 E-value: 1.43e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5453980 109 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAqsqliksdemqrLRSQALNAFGSGDYTAAIAFLDKILE 182
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESPDAAAA------------LLLLGLAALRQGRLAEAAAAYRAALR 62
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
107-137 |
1.55e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.55e-03
10 20 30
....*....|....*....|....*....|.
gi 5453980 107 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 137
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| ZUO1 |
COG5269 |
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ... |
388-482 |
1.58e-03 |
|
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227594 [Multi-domain] Cd Length: 379 Bit Score: 40.79 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 388 KQSQKRDYYKILGVKR---NAKKQEIIKAYRKLALQWHPDNfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDP 464
Cdd:COG5269 38 KNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDK-TAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116
|
90
....*....|....*...
gi 5453980 465 LDAESQQGGGGNPFHRSW 482
Cdd:COG5269 117 ADVPPPRIYTPDEFFEVW 134
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
340-373 |
1.66e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 1.66e-03
10 20 30
....*....|....*....|....*....|....
gi 5453980 340 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 373
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
320-387 |
1.86e-03 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 40.19 E-value: 1.86e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5453980 320 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ---IREGLEKAQRLL 387
Cdd:COG2912 193 KDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCPEDPDaelIKEQLEELRRKL 263
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
36-100 |
2.38e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 2.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5453980 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 100
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| PRK14288 |
PRK14288 |
molecular chaperone DnaJ; |
395-459 |
2.40e-03 |
|
molecular chaperone DnaJ;
Pssm-ID: 172776 [Multi-domain] Cd Length: 369 Bit Score: 40.06 E-value: 2.40e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5453980 395 YYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPD---RNAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
40-114 |
2.54e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 2.54e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5453980 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYI---AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 114
Cdd:COG1729 33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
319-382 |
2.56e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 2.56e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5453980 319 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 382
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
115-224 |
3.71e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 115 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLiksdemqrlrsqALNAFGSGDYTAAIAFLDKILEV---CVWDAELR 191
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWL------------GEAYYALGDYDEAAEAFEKLLKRypdSPKAPDAL 70
|
90 100 110
....*....|....*....|....*....|...
gi 5453980 192 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 224
Cdd:COG1729 71 LKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
85-148 |
5.14e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 5.14e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5453980 85 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 148
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
269-389 |
6.34e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 38.30 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 269 NKLIESAEELIRDGRYTDATSKYESVMKTEPSiAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAlkDRAE 348
Cdd:TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA--DYAY 110
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 5453980 349 aYLIEEMYDEAIQDYETAQEHnendqqIREGLEKAQRLLKQ 389
Cdd:TIGR03302 111 -YLRGLSNYNQIDRVDRDQTA------AREAFEAFQELIRR 144
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
40-100 |
6.47e-03 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 36.89 E-value: 6.47e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5453980 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 100
Cdd:TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
162-239 |
6.63e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5453980 162 LNAFGSGDYTAAIAFLDKILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT---EAFYKISTLYYQL 235
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYpnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
....
gi 5453980 236 GDHE 239
Cdd:COG1729 81 GDYD 84
|
|
| |
