|
Name |
Accession |
Description |
Interval |
E-value |
| Ndc80_HEC |
pfam03801 |
HEC/Ndc80p family; Members of this family are components of the mitotic spindle. It has been ... |
51-206 |
1.24e-69 |
|
HEC/Ndc80p family; Members of this family are components of the mitotic spindle. It has been shown that Ndc80/HEC from yeast is part of a complex called the Ndc80p complex. This complex is thought to bind to the microtubules of the spindle.
Pssm-ID: 461058 Cd Length: 159 Bit Score: 222.93 E-value: 1.24e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 51 ERKVSLFGKRtsGHGSRNSQLGIFSSSEKI----KDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFL 126
Cdd:pfam03801 1 QRRSSVYGGR--GGGPRSSHQSFFSSSPMPasvpRDPRPLRDKSFQQQCIQELLEYLTENNFEHPLSPKLLKSPTQKDFN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 127 KIFTFLYGFLCPSYELPDtKFEEEVPRIFKDLGYPFA--LSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPL 204
Cdd:pfam03801 79 SIFKFLYHRLDPSYEFQK-KIEEEVPMILKQLRYPFLdsISKSQLSAVGGPHTWPTFLGLLHWLVELAKFLEALEQNLYD 157
|
..
gi 5174457 205 FD 206
Cdd:pfam03801 158 DD 159
|
|
| DUF5595 |
pfam18077 |
Domain of unknown function (DUF5595); This domain is found in Nude C 80 (Ndc80) proteins which ... |
213-285 |
3.63e-27 |
|
Domain of unknown function (DUF5595); This domain is found in Nude C 80 (Ndc80) proteins which can be found in species such as Homo sapiens. Ndc80 protein complexes are a core component of the end-on attachment sites for kinetochore microtubules. Ndc80 is also known as Hec1, for highly expressed in cancer 1.
Pssm-ID: 465636 [Multi-domain] Cd Length: 73 Bit Score: 104.71 E-value: 3.63e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5174457 213 EETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQE 285
Cdd:pfam18077 1 EEIEDGIEYNKLFLDYTVKCYNKFMQGEDTFEEEDAELLSKLKELYNVDEALIESLEEEHKRLNEEIERLEKE 73
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-623 |
1.44e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 240 ADSFDEMNAELQSKLKDLFnvdAFKLESLEAKNRALNEQIARLEQEREkepnrleSLRKLKASLQGDVQKYQAYMSNLES 319
Cdd:TIGR02168 212 AERYKELKAELRELELALL---VLRLEELREELEELQEELKEAEEELE-------ELTAELQELEEKLEELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 320 HSAILDQKLNGLNEEIARVELECETIKQEntrlqniidnQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLwnEEL 399
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRER----------LANLERQLEELEAQLEELESKLDELAEELAELEEKL--EEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 400 KyaRGKEAIETQLAEYHKLARKLKLIPKGAEnskgydfeikfnpeaganclvkyraQVYVPLKELLNETEEEINKALNKK 479
Cdd:TIGR02168 350 K--EELESLEAELEELEAELEELESRLEELE-------------------------EQLETLRSKVAQLELQIASLNNEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 480 MGLEDTLEQLNAMITESKRSVRTLKEEVQKLD-DLYQQKIKEAEEEDEKCASELESLEKHKHLLEstvnQGLSEAMNELD 558
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELR----EELEEAEQALD 478
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5174457 559 AVQREYQLVVQttteeRRKVGNNLQRLLEMVATHVGSVEKHLEE---------QIAKVDREYEECMSEDLSENI 623
Cdd:TIGR02168 479 AAERELAQLQA-----RLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlsELISVDEGYEAAIEAALGGRL 547
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-563 |
3.12e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 3.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 244 DEMNAELQSKLKDLFNVDAfKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLK-------ASLQGDVQKYQAYMSN 316
Cdd:TIGR02168 722 EELSRQISALRKDLARLEA-EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELaeaeaeiEELEAQIEQLKEELKA 800
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 317 LESHSAILDQKLNGLNEEIARVELECET-------IKQENTRLQNIIDNQKysvADIERINHERNELQQTINKLTKDLEA 389
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESlerriaaTERRLEDLEEQIEELS---EDIESLAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 390 EQQklwneelKYARGKEAIETQLAEYHKLARKLklipKGAENSKGYdfeikfnpeaganclvkyraqvyvpLKELLNETE 469
Cdd:TIGR02168 878 LLN-------ERASLEEALALLRSELEELSEEL----RELESKRSE-------------------------LRRELEELR 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 470 EEINKALNKKMGLEDTLEQLNAMITES--------KRSVRTLKEEVQKLDD---LYQQKIKE-------AEEEDEKCASE 531
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEysltleeaEALENKIEDDEEEARRrlkRLENKIKElgpvnlaAIEEYEELKER 1001
|
330 340 350
....*....|....*....|....*....|..
gi 5174457 532 LESLEKHKHLLESTVNQgLSEAMNELDAVQRE 563
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKET-LEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-642 |
2.04e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 2.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQgdvqkyqaymsnleshsaildQKLNGLNEEIARVELECE 343
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS---------------------RQISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 344 TIKQENTRLQniidnqkysvADIERINHERNELQQTINKLT---KDLEAEQQKLwneELKYARGKEAIETQLAEYHKLAR 420
Cdd:TIGR02168 744 QLEERIAQLS----------KELTELEAEIEELEERLEEAEeelAEAEAEIEEL---EAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 421 KLKLIPKGAENskgydfeikfnpeaganclvkyRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSV 500
Cdd:TIGR02168 811 ELTLLNEEAAN----------------------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 501 RTLKEEVQKLDDLY---QQKIKEAEEEDEKCASELESLEKHKHLLEstvnQGLSEAMNELDAVQREYQLVVQTTTEERRK 577
Cdd:TIGR02168 869 EELESELEALLNERaslEEALALLRSELEELSEELRELESKRSELR----RELEELREKLAQLELRLEGLEVRIDNLQER 944
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 578 VGNNLQRLLEMVATHVGSVEKHLEEQIAKVDR-----------------EYEEcMSEDLSENIKEIRDKYEKKATLIKSS 640
Cdd:TIGR02168 945 LSEEYSLTLEEAEALENKIEDDEEEARRRLKRlenkikelgpvnlaaieEYEE-LKERYDFLTAQKEDLTEAKETLEEAI 1023
|
..
gi 5174457 641 EE 642
Cdd:TIGR02168 1024 EE 1025
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
238-576 |
3.70e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 3.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 238 SGADSFDEmnaELQSKLKDLFNVDAfKLESLEAKNRALNEQIARLEQEREKepnrLESLRKLKASLQ--------GDVQK 309
Cdd:TIGR02169 163 AGVAEFDR---KKEKALEELEEVEE-NIERLDLIIDEKRQQLERLRREREK----AERYQALLKEKReyegyellKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 310 YQAYMSNLESHSAILDQKLNGLNEEIARVELECE----TIKQENTRLQNIIDNQKYSV-ADIERINHERNELQQTI---N 381
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEeieqLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIaekE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 382 KLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKlaRKLKLIPKGAENSKGYDfEIKFNPEAGANCLVKYRAQVyVPL 461
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK--RRDKLTEEYAELKEELE-DLRAELEEVDKEFAETRDEL-KDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 462 KELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLY---QQKIKEAEEEDEKCASELESLEKH 538
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKedkALEIKKQEWKLEQLAADLSKYEQE 470
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 5174457 539 KHLLEST---VNQGLSEAMNELDAVQREYQLVVQTTTEERR 576
Cdd:TIGR02169 471 LYDLKEEydrVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
226-642 |
7.84e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 7.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 226 LDYTIKCYESFMSGADSFD----EMNAELQSKLKDLFNVDAfKLESLEAKNRALNEQIARLEQEREKepnrLESLRKLKA 301
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEelikEKEKELEEVLREINEISS-ELPELREELEKLEKEVKELEELKEE----IEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 302 SLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVElECETIKQENTRLQNIIDNQKYSVADIE----RINHERNELQ 377
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEkrlsRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 378 QTINKLTKDlEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSKGYdfeikfNPEAGANCLVKyraqv 457
Cdd:PRK03918 328 ERIKELEEK-EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL------TPEKLEKELEE----- 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 458 yvpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSV-------RTLKEEVQK-LDDLYQQKIKEAEEEDEKCA 529
Cdd:PRK03918 396 ---LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgRELTEEHRKeLLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 530 SELESLEKHKHLLESTVNQG---------------LSEAMN-----ELDAVQREYQLVV---------QTTTEERRKVGN 580
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKEseliklkelaeqlkeLEEKLKkynleELEKKAEEYEKLKekliklkgeIKSLKKELEKLE 552
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5174457 581 NLQRLLEMVATHVGSVEKHLEEQIAKVDREYEECMsEDLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:PRK03918 553 ELKKKLAELEKKLDELEEELAELLKELEELGFESV-EELEERLKELEPFYNEYLELKDAEKE 613
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
264-581 |
5.53e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 5.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECE 343
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 344 TIKQE----NTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLA 419
Cdd:COG1196 327 ELEEEleelEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 420 RKLKLIPKGAENSKGYDFEIKFNPEAganclvkyraqvyvpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRS 499
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAE---------------LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 500 VRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNELDAVQREYQLVVQTTTEERRKVG 579
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
..
gi 5174457 580 NN 581
Cdd:COG1196 552 VV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
249-566 |
7.53e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 7.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 249 ELQSKLKDLfnvdafKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKyqaymsnleshsaiLDQKL 328
Cdd:COG1196 217 ELKEELKEL------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE--------------LRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 329 NGLNEEIARVELECETIKQENTRLQNIIDNQKysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAI 408
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLE---ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 409 ETQLAEYHKLARKLKlipkgaenskgyDFEIKFNPEAGAnclvkyRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQ 488
Cdd:COG1196 354 EEAEAELAEAEEALL------------EAEAELAEAEEE------LEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 489 LNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLEST--VNQGLSEAMNELDAVQREYQL 566
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAalLEAALAELLEELAEAAARLLL 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
275-613 |
1.43e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 275 LNEQIARLEQEREKepnrLESLRKLKASLqgDVQKYQAYMSNLEShsaiLDQKLNGLNEEIARVELECETIKQENTRLQN 354
Cdd:COG1196 198 LERQLEPLERQAEK----AERYRELKEEL--KELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAELAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 355 IIDNQKysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLipkgaenskg 434
Cdd:COG1196 268 ELEELR---LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE---------- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 435 ydfeikfnpeaganclvkyraqvyvpLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLY 514
Cdd:COG1196 335 --------------------------LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 515 QQKIKEAEEEDEKCASELESLEKHKHLLESTVNQ--GLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQRLLEMVATH 592
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEEleELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
330 340
....*....|....*....|.
gi 5174457 593 vGSVEKHLEEQIAKVDREYEE 613
Cdd:COG1196 469 -LEEAALLEAALAELLEELAE 488
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
240-642 |
1.56e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 240 ADSFDEMNAELQSKLKDLFNVDAfKLESLEAKNRALNEQIARLEQ---EREKEPNRLESLRKLKASLQGDVQKYQ---AY 313
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEK-RLSRLEEEINGIEERIKELEEkeeRLEELKKKLKELEKRLEELEERHELYEeakAK 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 314 MSNLESHSAI--------LDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERI------------NHER 373
Cdd:PRK03918 371 KEELERLKKRltgltpekLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgreltEEHR 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 374 NELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKL---IPKGAENSKGYDFEikfnpeagancL 450
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeqLKELEEKLKKYNLE-----------E 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 451 VKYRAQVYVPLKELLNETEEEINkalnkkmGLEDTLEQLNAMITES---KRSVRTLKEEVQKLDDLYQQKIKEAEEEDEK 527
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIK-------SLKKELEKLEELKKKLaelEKKLDELEEELAELLKELEELGFESVEELEE 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 528 CASELESLekHKHLLEstvnqgLSEAMNELDAVQreyqlvvqtttEERRKVGNNLQRLLEMVATHVGSVEKhLEEQIAKV 607
Cdd:PRK03918 593 RLKELEPF--YNEYLE------LKDAEKELEREE-----------KELKKLEEELDKAFEELAETEKRLEE-LRKELEEL 652
|
410 420 430
....*....|....*....|....*....|....*
gi 5174457 608 DREYEECMSEDLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:PRK03918 653 EKKYSEEEYEELREEYLELSRELAGLRAELEELEK 687
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
274-530 |
1.61e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 274 ALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQ 353
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 354 NIIDNQKYSVADIERiNHERNELQQTINKLTKDLEAEQQKLWNEELKYArgKEAIETQLAEYHKLARKLKLIPKGAENSK 433
Cdd:COG4942 97 AELEAQKEELAELLR-ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYL--APARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 434 gydfeikfnpeaganclvkyraqvyVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDL 513
Cdd:COG4942 174 -------------------------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....*..
gi 5174457 514 YQQKIKEAEEEDEKCAS 530
Cdd:COG4942 229 IARLEAEAAAAAERTPA 245
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
264-576 |
3.09e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 3.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLE-------QEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIA 336
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIEnrldelsQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 337 RVELECETIKQENTRLQNIIDN--QKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAE 414
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEALNDleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 415 YHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQvYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMIT 494
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 495 ESKRSVRTLKEEVQKLDDLYQQKIKEAEEED--EKCASELESLEKHKHLLEStVNQGLSEAMNELDAVQREYQLVVQTTT 572
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEEIPEEELslEDVQAELQRVEEEIRALEP-VNMLAIQEYEEVLKRLDELKEKRAKLE 999
|
....
gi 5174457 573 EERR 576
Cdd:TIGR02169 1000 EERK 1003
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
237-589 |
1.88e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 51.06 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 237 MSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSN 316
Cdd:PLN02939 102 MQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 317 L----------ESHSAILDQKLNGLNEEIAR-----------VELECETIKQENTRLQNiidnqkysvaDIERINHERNE 375
Cdd:PLN02939 182 TdariklaaqeKIHVEILEEQLEKLRNELLIrgateglcvhsLSKELDVLKEENMLLKD----------DIQFLKAELIE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 376 LQQTINKLTKdLEAEQQKLwneelkyargkeaiETQLAEYhklarKLKLIPKGAENSKGYDFEIKFNPEAGANclvkyra 455
Cdd:PLN02939 252 VAETEERVFK-LEKERSLL--------------DASLREL-----ESKFIVAQEDVSKLSPLQYDCWWEKVEN------- 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 456 qvyvpLKELLNETEEEINKA---LNKKMGLEDTLEQLNAMITESKRSvrtlKEEVQKLdDLYQQKIKEAEEEDEKCASEL 532
Cdd:PLN02939 305 -----LQDLLDRATNQVEKAalvLDQNQDLRDKVDKLEASLKEANVS----KFSSYKV-ELLQQKLKLLEERLQASDHEI 374
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 533 --------ESLEKHKHLLESTVNQGLSEAMNE-LDAVQREY----QLVVQTTTEERRKVGNNLQRLLEMV 589
Cdd:PLN02939 375 hsyiqlyqESIKEFQDTLSKLKEESKKRSLEHpADDMPSEFwsriLLLIDGWLLEKKISNNDAKLLREMV 444
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
264-614 |
2.94e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLEQEREKEPNRLES----LRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLN------E 333
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESsertVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegD 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 334 EIARVELECETIKQENTRLQNIIDNQKYSVADIERI--NHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKE----- 406
Cdd:pfam15921 542 HLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKdakir 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 407 AIETQLAEYHklARKLKLIPKGAEnskgydfeikfnpeaganclvKYRAqvyvpLKELLNETEEEINKALNKKMGLEDTL 486
Cdd:pfam15921 622 ELEARVSDLE--LEKVKLVNAGSE---------------------RLRA-----VKDIKQERDQLLNEVKTSRNELNSLS 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 487 EQLNAMitesKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLE---KHKHLLESTVNQGLSEAMNELDAVQRE 563
Cdd:pfam15921 674 EDYEVL----KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdGHAMKVAMGMQKQITAKRGQIDALQSK 749
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5174457 564 YQLVVQTTTEERRKV------GNNLQRLLEMVATH----------VGSVEKHLEEQIA-------KVDREYEEC 614
Cdd:pfam15921 750 IQFLEEAMTNANKEKhflkeeKNKLSQELSTVATEknkmagelevLRSQERRLKEKVAnmevaldKASLQFAEC 823
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
248-628 |
4.21e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 248 AELQSKLKDLFN-------VDAFKLESLEAKNRAL---NEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAY---- 313
Cdd:COG4717 49 ERLEKEADELFKpqgrkpeLNLKELKELEEELKEAeekEEEYAELQEELEELEEELEELEAELEELREELEKLEKLlqll 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 314 -----MSNLESHSAILDQKLNGLN---EEIARVELECETIKQENTRLQNIIDNQKYSV-----ADIERINHERNELQQTI 380
Cdd:COG4717 129 plyqeLEALEAELAELPERLEELEerlEELRELEEELEELEAELAELQEELEELLEQLslateEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 381 NKLTKDLEAEQQKLWN--EELKYARGKEAIETQLAEYHKLARKLKLIPKGAE-NSKGYDFEIKFNPEAGANCLV------ 451
Cdd:COG4717 209 AELEEELEEAQEELEEleEELEQLENELEAAALEERLKEARLLLLIAAALLAlLGLGGSLLSLILTIAGVLFLVlgllal 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 452 --KYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQkIKEAEEEdekca 529
Cdd:COG4717 289 lfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE-AEELEEE----- 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 530 SELESLEKHKHLLESTVNQGLSEAMNELDAVQREYqlvvQTTTEERRKVGNNLQRLL-EMVATHVGSVEKHLEEQIAKVD 608
Cdd:COG4717 363 LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEY----QELKEELEELEEQLEELLgELEELLEALDEEELEEELEELE 438
|
410 420
....*....|....*....|
gi 5174457 609 REYEECmSEDLSENIKEIRD 628
Cdd:COG4717 439 EELEEL-EEELEELREELAE 457
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
248-421 |
9.37e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 9.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 248 AELQSKLKDLfnvdAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAY-------------- 313
Cdd:COG4942 58 AALERRIAAL----ARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplalllspedfld 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 314 ----MSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKysvADIERINHERNELQQTINKLTKDLEA 389
Cdd:COG4942 134 avrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE---EERAALEALKAERQKLLARLEKELAE 210
|
170 180 190
....*....|....*....|....*....|..
gi 5174457 390 EQQKLWNEELKYARGKEAIETQLAEYHKLARK 421
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
244-430 |
1.08e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 244 DEMNAELQSKLKDLFNVDAfKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAI 323
Cdd:COG3883 26 SELQAELEAAQAELDALQA-ELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 324 LDQKLNG--LNEEIARVELecetIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKY 401
Cdd:COG3883 105 LDVLLGSesFSDFLDRLSA----LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180
....*....|....*....|....*....
gi 5174457 402 ARGKEAIETQLAEYHKLARKLKLIPKGAE 430
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
264-642 |
1.25e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLEQEREKEPNRLESL---RKLKASLQGDV---QKYQAYMSNLESHSAILDQKLNGLNeeiar 337
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTImpeEESAKVCLTDVtimERFQMELKDVERKIAQQAAKLQGSD----- 819
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 338 VELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHK 417
Cdd:TIGR00606 820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 418 LARKLKlipkgaenskgyDFEIKFNPEAGAnclvkyraqvyvpLKELLNETEEEINKALNKKMGLEDtleQLNAMITESK 497
Cdd:TIGR00606 900 LIREIK------------DAKEQDSPLETF-------------LEKDQQEKEELISSKETSNKKAQD---KVNDIKEKVK 951
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 498 RSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKhlleSTVNQGLSEAMNELDAV-QREYQLVVQTTteeRR 576
Cdd:TIGR00606 952 NIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQ----EKINEDMRLMRQDIDTQkIQERWLQDNLT---LR 1024
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5174457 577 KVGNNLQRLLEMVATHVGSVEkhlEEQIAKVDREYEEcmsedLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:TIGR00606 1025 KRENELKEVEEELKQHLKEMG---QMQVLQMKQEHQK-----LEENIDLIKRNHVLALGRQKGYEK 1082
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
265-540 |
1.61e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 265 LESLEAKNRALNEQIA-------RLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSA-----ILDQKLNGLN 332
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEeleedlsSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLE 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 333 EEIARVELECETIKQENTRLQniidnqkysvADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKyargKEAIETQL 412
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLT----------LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK----KEELEEEL 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 413 AEYHK----LARKLKLIPKGAEN--SKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKalNKKMGLED-- 484
Cdd:TIGR02169 871 EELEAalrdLESRLGDLKKERDEleAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED--PKGEDEEIpe 948
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174457 485 ---TLEQLNAMITESKRSVRTLK----------EEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKH 540
Cdd:TIGR02169 949 eelSLEDVQAELQRVEEEIRALEpvnmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
260-524 |
2.51e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 260 VDAFKLESLEAKNRALNEQIARLEQerekepnRLESLRKLKASLQGDVQKYQA--YMSNLESHSAILDQKLNGLNEEIAR 337
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEE-------QLPELRKELEEAEAALEEFRQknGLVDLSEEAKLLLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 338 VELECETIKQENTRLQNIIDNQKYSVADIERiNHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHK 417
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 418 LARKLklipkgaenskgydfeikfnpeagancLVKYRAQVyvplkELLNETEEEINKALNKkmgLEDTLEQLNAMITEsk 497
Cdd:COG3206 310 EAQRI---------------------------LASLEAEL-----EALQAREASLQAQLAQ---LEARLAELPELEAE-- 352
|
250 260 270
....*....|....*....|....*....|
gi 5174457 498 rsVRTLKEEVQKLDDLYQ---QKIKEAEEE 524
Cdd:COG3206 353 --LRRLEREVEVARELYEsllQRLEEARLA 380
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
253-642 |
3.66e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 253 KLKDLFNVDAFKLE----SLEAKNRALNEQIARLEQER---EKEPNRLES---------------LRKLKA------SLQ 304
Cdd:TIGR04523 138 KNIDKFLTEIKKKEkeleKLNNKYNDLKKQKEELENELnllEKEKLNIQKnidkiknkllklellLSNLKKkiqknkSLE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 305 GDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLT 384
Cdd:TIGR04523 218 SQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEI 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 385 KDLEAEQQKLWNEELK-----YARGKEAIETQLAEYHK----LARKLKLIPKGAENSKGYDFEIkfnpeaganclvkyra 455
Cdd:TIGR04523 298 SDLNNQKEQDWNKELKselknQEKKLEEIQNQISQNNKiisqLNEQISQLKKELTNSESENSEK---------------- 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 456 qvyvplKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLD----------DLYQQKIKEAEEED 525
Cdd:TIGR04523 362 ------QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDeqikklqqekELLEKEIERLKETI 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 526 EKCASELESLEKHKHLLESTVN---QGLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQRLLEMVathvgSVEKHLEE 602
Cdd:TIGR04523 436 IKNNSEIKDLTNQDSVKELIIKnldNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLN-----EEKKELEE 510
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 5174457 603 QIAKVDREYEECMS--EDLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:TIGR04523 511 KVKDLTKKISSLKEkiEKLESEKKEKESKISDLEDELNKDDF 552
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
264-427 |
3.81e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDvqkyqaymsnleshsaildqKLNGLNEEIARVELECE 343
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD--------------------RLEQLEREIERLERELE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 344 TIKQENTRLQNIIDNQKYSV-ADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKL 422
Cdd:COG4913 356 ERERRRARLEALLAALGLPLpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
....*
gi 5174457 423 KLIPK 427
Cdd:COG4913 436 SNIPA 440
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
254-524 |
4.44e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 254 LKDLFNVDAF-KLESLEAKN-----RALNEQIARL---EQEREKEPNRLESLRKLKAslqgDVQKYQAYMSNLESHSAIL 324
Cdd:COG4913 203 FKPIGDLDDFvREYMLEEPDtfeaaDALVEHFDDLeraHEALEDAREQIELLEPIRE----LAERYAAARERLAELEYLR 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 325 D--------QKLNGLNEEIARVELECETIKQENTRLQNIIDNQKysvADIERINHERNELQ-QTINKLTKDLEAEQQKLw 395
Cdd:COG4913 279 AalrlwfaqRRLELLEAELEELRAELARLEAELERLEARLDALR---EELDELEAQIRGNGgDRLEQLEREIERLEREL- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 396 neelkyargkEAIETQLAEYHKLARKLKL-IPKGAEnskgyDFEikfnpeAGANCLVKYRAQvyvpLKELLNETEEEINK 474
Cdd:COG4913 355 ----------EERERRRARLEALLAALGLpLPASAE-----EFA------ALRAEAAALLEA----LEEELEALEEALAE 409
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 5174457 475 ALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEE 524
Cdd:COG4913 410 AEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAE 459
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
241-425 |
4.63e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 4.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 241 DSFDEMNAELQSKLKDLFNVDAfKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESH 320
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQ-DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 321 SAILDQKLNGLNEEIARVELECETIKQE-----------NTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEA 389
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEEllealraaaelAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
170 180 190
....*....|....*....|....*....|....*.
gi 5174457 390 EQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLI 425
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
345-537 |
5.62e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 345 IKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKl 424
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 425 ipkgaENSKGYDF-EIKFNPEAGANCL--VKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITE---SKR 498
Cdd:COG3883 97 -----RSGGSVSYlDVLLGSESFSDFLdrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEleaAKA 171
|
170 180 190
....*....|....*....|....*....|....*....
gi 5174457 499 SVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEK 537
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
230-409 |
9.79e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 9.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 230 IKCYESFMsgaDSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQK 309
Cdd:PHA02562 197 IKTYNKNI---EEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 310 YQAYMSNLESHSaILDQKLNGLNEEIARVelecETIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEA 389
Cdd:PHA02562 274 FQKVIKMYEKGG-VCPTCTQQISEGPDRI----TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348
|
170 180
....*....|....*....|
gi 5174457 390 EQQKLWNEELKYARGKEAIE 409
Cdd:PHA02562 349 NKQSLITLVDKAKKVKAAIE 368
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-642 |
1.19e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 364 ADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLklipkgaenskgydfeikfnp 443
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL--------------------- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 444 eaganclvkyraqvyvplkellNETEEEINKALNKKMGLEDTLEQLNAMITEskrsvrtLKEEVQKLddlyQQKIKEAEE 523
Cdd:COG1196 298 ----------------------ARLEQDIARLEERRRELEERLEELEEELAE-------LEEELEEL----EEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 524 EDEKCASELESLEKHKHLLESTVNQGLSEAMNELDAVQREYQLVVQTTTEERRKVgNNLQRLLEMVATHVGSVEKHLEEQ 603
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA-AQLEELEEAEEALLERLERLEEEL 423
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 5174457 604 IAKVDREYEECMSED-----LSENIKEIRDKYEKKATLIKSSEE 642
Cdd:COG1196 424 EELEEALAELEEEEEeeeeaLEEAAEEEAELEEEEEALLELLAE 467
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
244-508 |
1.39e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 244 DEMNAELQSKLKDLfnvdAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAI 323
Cdd:TIGR02169 286 EEEQLRVKEKIGEL----EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 324 LDQKLNGLNEEIARVELECETIKQENTRLQNiidnqkysvaDIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYAR 403
Cdd:TIGR02169 362 LKEELEDLRAELEEVDKEFAETRDELKDYRE----------KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 404 GKEAIETQLAEYHKLARKLKlipkgaenskgydfEIKFNPEAGANCLVKYRAQVYvPLKELLNETEEEINKALNKKMGLE 483
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIK--------------KQEWKLEQLAADLSKYEQELY-DLKEEYDRVEKELSKLQRELAEAE 496
|
250 260
....*....|....*....|....*
gi 5174457 484 DTLEQLNAMITESKRSVRTLKEEVQ 508
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQ 521
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
281-577 |
2.17e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 281 RLEQEREKEPNRLESLRKLKASlqgdvqkYQAYMSNLESHSAILDQKlnglnEEIA-RVELECETIKQENTRLQNIIDNQ 359
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEA-------EKARQAEMDRQAAIYAEQ-----ERMAmERERELERIRQEERKRELERIRQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 360 KYSVADIERINH-ERNEL--QQTINKLTKDLE-AEQQKLWNEELKYARGKEAIET-QLAEYHKLARKLKLipKGAENSKG 434
Cdd:pfam17380 368 EEIAMEISRMRElERLQMerQQKNERVRQELEaARKVKILEEERQRKIQQQKVEMeQIRAEQEEARQREV--RRLEEERA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 435 YDFE-IKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKAL---NKKMGLEDTLEQLNAMITESKRSVRTLKEEVQ-K 509
Cdd:pfam17380 446 REMErVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRaeeQRRKILEKELEERKQAMIEEERKRKLLEKEMEeR 525
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5174457 510 LDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTvnqglSEAMNELDAVQREYQLVVQTTTEERRK 577
Cdd:pfam17380 526 QKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKA-----TEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
252-588 |
2.33e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 252 SKLKDLFNVDAFKLESLEAKNRALNEQIarleqeREKEpNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGL 331
Cdd:pfam10174 383 RDLKDMLDVKERKINVLQKKIENLQEQL------RDKD-KQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERL 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 332 NEEIARVEL----ECETIKQENTRLQNIIDNQKYSVADIERinhERNELQQTINKLTKDLEAEQQKLWNEELKYARGKE- 406
Cdd:pfam10174 456 KEQREREDRerleELESLKKENKDLKEKVSALQPELTEKES---SLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEe 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 407 --AIETQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGAnclvkyRAQVYVP-LKELLNETEEEINkalnkkmgle 483
Cdd:pfam10174 533 csKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESG------KAQAEVErLLGILREVENEKN---------- 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 484 DTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESL-EKHKHLLESTVNQGLSEAMNELDAVQR 562
Cdd:pfam10174 597 DKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLaDNSQQLQLEELMGALEKTRQELDATKA 676
|
330 340 350
....*....|....*....|....*....|....*.
gi 5174457 563 EYQLVVQTTTE----------ERRKvgnNLQRLLEM 588
Cdd:pfam10174 677 RLSSTQQSLAEkdghltnlraERRK---QLEEILEM 709
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
264-394 |
3.85e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQgDVQKYQAYmsnleshsailDQKLNGLNEEIARVELECE 343
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWD-----------EIDVASAEREIAELEAELE 678
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 5174457 344 TIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKL 394
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL 729
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
252-642 |
4.77e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.50 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 252 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQ--EREKEPNRLESLR-KLKASLQGD-----VQKYQAYMSNLESHSAI 323
Cdd:TIGR01612 1358 NKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKliKKIKDDINLEECKsKIESTLDDKdidecIKKIKELKNHILSEESN 1437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 324 LDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINheRNELQQTINKLTK-DLEAEQQKLWNEELK-- 400
Cdd:TIGR01612 1438 IDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFN--INELKEHIDKSKGcKDEADKNAKAIEKNKel 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 401 YARGKEAIETQLAEYHKLARKLKlIPKGAENSKGYDFEIK-----FNPEAGanclvkyraqvyvplkellnETEEEINKA 475
Cdd:TIGR01612 1516 FEQYKKDVTELLNKYSALAIKNK-FAKTKKDSEIIIKEIKdahkkFILEAE--------------------KSEQKIKEI 1574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 476 LNKKMGLEDTLEQLNamitESKRSVRTLKEEVQKLDDLYQqKIKEAEEEDEKCASELESLEKHKHLLE-STVNQGLSEAM 554
Cdd:TIGR01612 1575 KKEKFRIEDDAAKND----KSNKAAIDIQLSLENFENKFL-KISDIKKKINDCLKETESIEKKISSFSiDSQDTELKENG 1649
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 555 NELDAVQReyqlVVQTTTEERRKVGNNLQRLLEmvathVGSVEKHLEEQIAKVDREYEECMSEDLSENIKEIRDKYEKKA 634
Cdd:TIGR01612 1650 DNLNSLQE----FLESLKDQKKNIEDKKKELDE-----LDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESIK 1720
|
....*...
gi 5174457 635 TLIKSSEE 642
Cdd:TIGR01612 1721 ELIEPTIE 1728
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
234-642 |
5.83e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 234 ESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNE----------QIARLEQEREKEPNRLES-------- 295
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEktteisntqtQLNQLKDEQNKIKKQLSEkqkeleqn 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 296 ----------LRKLKASLQ---------------GDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENT 350
Cdd:TIGR04523 280 nkkikelekqLNQLKSEISdlnnqkeqdwnkelkSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 351 RLQNIIdNQKYSvaDIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAE 430
Cdd:TIGR04523 360 EKQREL-EEKQN--EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETII 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 431 ---------NSKGYDFEIKFNPeagancLVKYRAQVYVPLKEL-----------------LNETEEEINKALNKKMGLED 484
Cdd:TIGR04523 437 knnseikdlTNQDSVKELIIKN------LDNTRESLETQLKVLsrsinkikqnleqkqkeLKSKEKELKKLNEEKKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 485 TLEQLNAMITESKRSVRTLKEEVQKLDdlyqQKIKEAEEEDEKCASEL--ESLEKHKHLLESTVNQgLSEAMNELDAVQR 562
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKE----SKISDLEDELNKDDFELkkENLEKEIDEKNKEIEE-LKQTQKSLKKKQE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 563 EYQLVVQTTTEERRKVGNNLQRLLEMVAThvgsvekhLEEQIAKVDREYEEcmsedLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISS--------LEKELEKAKKENEK-----LSSIIKNIKSKKNKLKQEVKQIKE 652
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
461-641 |
7.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 7.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 461 LKELLNETEEEINKAlnkkmGLEDTLEQLNAMITESKRS---VRTLKEEVQKLddlyQQKIKEAEEEDEKCASELESLEK 537
Cdd:COG4913 650 LQRLAEYSWDEIDVA-----SAEREIAELEAELERLDASsddLAALEEQLEEL----EAELEELEEELDELKGEIGRLEK 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 538 HKHLLEstvnQGLSEAMNELDAVQREYQLVVQTTTEER----------RKVGNNLQRLLEMVATHVGSVEKHLEEQIAKV 607
Cdd:COG4913 721 ELEQAE----EELDELQDRLEAAEDLARLELRALLEERfaaalgdaveRELRENLEERIDALRARLNRAEEELERAMRAF 796
|
170 180 190
....*....|....*....|....*....|....
gi 5174457 608 DREYEECMSeDLSENIKEIRDkYEKKATLIKSSE 641
Cdd:COG4913 797 NREWPAETA-DLDADLESLPE-YLALLDRLEEDG 828
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
285-559 |
8.92e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 8.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 285 EREKEPNRLESLRKLKASLQGDVQKYQAYMSnleshsaildqKLNGLNEEIARVELEC--ETIKQENTRLQNIIDnqkys 362
Cdd:PRK05771 37 KEELSNERLRKLRSLLTKLSEALDKLRSYLP-----------KLNPLREEKKKVSVKSleELIKDVEEELEKIEK----- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 363 vaDIERINHERNELQQTINKLTKDLEA-EQQKLWNEELKYARGKEAIETQLAEYHK-LARKLKLIPkgaenSKGYDFEIK 440
Cdd:PRK05771 101 --EIKELEEEISELENEIKELEQEIERlEPWGNFDLDLSLLLGFKYVSVFVGTVPEdKLEELKLES-----DVENVEYIS 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 441 FNPEaganclvkYRAQVYVPLKELLNETEEEINKALNKKMGLEDTleqlnamiteskrsvRTLKEEVQKlddlYQQKIKE 520
Cdd:PRK05771 174 TDKG--------YVYVVVVVLKELSDEVEEELKKLGFERLELEEE---------------GTPSELIRE----IKEELEE 226
|
250 260 270
....*....|....*....|....*....|....*....
gi 5174457 521 AEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNELDA 559
Cdd:PRK05771 227 IEKERESLLEELKELAKKYLEELLALYEYLEIELERAEA 265
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-642 |
9.37e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 270 AKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILD----QKLNGLNEEIARVELECETI 345
Cdd:pfam02463 622 AKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEiqelQEKAESELAKEEILRRQLEI 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 346 KQENTR---------LQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLwNEELKYARGKEAIETQLAEYH 416
Cdd:pfam02463 702 KKKEQRekeelkklkLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK-EEKEEEKSELSLKEKELAEER 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 417 KLARKLKLIPKGAENSKGYDFEIKFNPEAganclVKYRAQVY---VPLKELLNETEEEINKALNKKMGLEDTLEQLNAMI 493
Cdd:pfam02463 781 EKTEKLKVEEEKEEKLKAQEEELRALEEE-----LKEEAELLeeeQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE 855
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 494 TESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNELD---AVQREYQLVVQT 570
Cdd:pfam02463 856 LERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEeriKEEAEILLKYEE 935
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174457 571 TTEERRKVGNNLQRLLEM-------VATHVGSVEKHLEEQIAKVDREYEECMSEDLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:pfam02463 936 EPEELLLEEADEKEKEENnkeeeeeRNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
248-439 |
1.01e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 248 AELQSKLKDLFN-VDAFKLE----SLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSA 322
Cdd:COG3206 185 PELRKELEEAEAaLEEFRQKnglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 323 I--LDQKLNGLNEEIAR------------VELEcETIKQENTRLQNIIDNQKYSV-ADIERINHERNELQQTINKLTKDL 387
Cdd:COG3206 265 IqqLRAQLAELEAELAElsarytpnhpdvIALR-AQIAALRAQLQQEAQRILASLeAELEALQAREASLQAQLAQLEARL 343
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 5174457 388 EAEQQKlwneELKYARGKEAIETQLAEYHKLARKLKLIpKGAENSKGYDFEI 439
Cdd:COG3206 344 AELPEL----EAELRRLEREVEVARELYESLLQRLEEA-RLAEALTVGNVRV 390
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
247-527 |
1.10e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 247 NAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQ 326
Cdd:COG4372 22 TGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 327 KLNGLNEEIARVELECETIKQENTRLQniiDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKE 406
Cdd:COG4372 102 ELESLQEEAEELQEELEELQKERQDLE---QQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 407 A-IETQLAEYHKLA-RKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKALNKKMGLED 484
Cdd:COG4372 179 AeAEQALDELLKEAnRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILK 258
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 5174457 485 TLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEK 527
Cdd:COG4372 259 EIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALL 301
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
249-629 |
1.11e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 249 ELQSKLKDLfnVDAFKLESLEAKnrALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKL 328
Cdd:PRK02224 290 ELEEERDDL--LAEAGLDDADAE--AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 329 NGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADI-----------ERINHERNELQQTINKLTKDLEAEQQKLWNE 397
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDApvdlgnaedflEELREERDELREREAELEATLRTARERVEEA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 398 ELKYARGK--------------EAIETQLAEYHKLARKLKLIPKGAEnskgyDFEIKFNpeaganclvkyRAqvyvplkE 463
Cdd:PRK02224 446 EALLEAGKcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVE-----EVEERLE-----------RA-------E 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 464 LLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIK---EAEEEDEKCASELESLEKHKH 540
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREaaaEAEEEAEEAREEVAELNSKLA 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 541 LLES------TVNQGLSEAMNELDAVQ--REYQLVVQTTTEERRKvgnNLQRLLEMVATHVGSV-EKHLEEqiAKVDREY 611
Cdd:PRK02224 583 ELKEriesleRIRTLLAAIADAEDEIErlREKREALAELNDERRE---RLAEKRERKRELEAEFdEARIEE--AREDKER 657
|
410
....*....|....*...
gi 5174457 612 EECMSEDLSENIKEIRDK 629
Cdd:PRK02224 658 AEEYLEQVEEKLDELREE 675
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
278-423 |
1.21e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 278 QIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAymsnleshsaildqKLNGLNEEIARVELECET----IKQENTRLQ 353
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKT--------------ELEDLEKEIKRLELEIEEvearIKKYEEQLG 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174457 354 NIIDNQKYSV---------ADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLK 423
Cdd:COG1579 84 NVRNNKEYEAlqkeieslkRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELE 162
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
260-642 |
2.29e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 260 VDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVE 339
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 340 LECETIKQENTRLQniidnQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLA 419
Cdd:pfam02463 633 ELTKLKESAKAKES-----GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 420 RKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQvyvplkelLNETEEEINKALNKKMGLEDTLEQLNAMitESKRS 499
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQK--------IDEEEEEEEKSRLKKEEKEEEKSELSLK--EKELA 777
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 500 VRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLseamNELDAVQREYQLVVQTTTEERRKVG 579
Cdd:pfam02463 778 EEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE----KIKEEELEELALELKEEQKLEKLAE 853
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5174457 580 NNLQRLLEMVATHVGSVEKHLEEQIAKVDREYEECMS-EDLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESkEEKEKEEKKELEEESQKLNLLEEKEN 917
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
461-642 |
2.39e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 461 LKELLNETEEEINKALNKKMGLEDTLEQLNAMIT---ESKRSVRTLKEEVQKLddlyQQKIKEAEEEDEKCASELESLEK 537
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDL----RETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 538 HKHLLESTVNQGLSEAmnELDAVQREYQLVVQTTTEERRkvgNNLQRLLEMVATHVGSVEKHLEEQIAKVDREYEEcmSE 617
Cdd:PRK02224 287 RLEELEEERDDLLAEA--GLDDADAEAVEARREELEDRD---EELRDRLEECRVAAQAHNEEAESLREDADDLEER--AE 359
|
170 180
....*....|....*....|....*
gi 5174457 618 DLSENIKEIRDKYEKKATLIKSSEE 642
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRRE 384
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
461-628 |
2.60e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 461 LKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLyQQKIKEAEEEDEKCASELESLEKHKH 540
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 541 LLESTvnQGLSEAMNELDAVQREYQLVvqtttEERRKVGNNLQRLLEmvathvgsvekHLEEQIAKVDREYEECMSEDLS 620
Cdd:COG4717 127 LLPLY--QELEALEAELAELPERLEEL-----EERLEELRELEEELE-----------ELEAELAELQEELEELLEQLSL 188
|
....*...
gi 5174457 621 ENIKEIRD 628
Cdd:COG4717 189 ATEEELQD 196
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
312-540 |
2.76e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 312 AYMSNLESHSAILDQKLNGLNEEIA----RVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDL 387
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKtynkNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 388 EAEQQKLWNeelKYARGKEAIEtQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAqvyvpLKELLNE 467
Cdd:PHA02562 254 SAALNKLNT---AAAKIKSKIE-QFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEK-----LDTAIDE 324
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174457 468 TEE---EINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDD---LYQQKIKEAEEEDEKCASELESLEKHKH 540
Cdd:PHA02562 325 LEEimdEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAefvDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
242-642 |
3.01e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 242 SFDEMNAELQSKL-KDLFNvdafKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLkaslqgdVQKYQAYMSNLESh 320
Cdd:PRK02224 188 SLDQLKAQIEEKEeKDLHE----RLNGLESELAELDEEIERYEEQREQARETRDEADEV-------LEEHEERREELET- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 321 saiLDQKLNGLNEEIARVELECETIKQE-----------NTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEA 389
Cdd:PRK02224 256 ---LEAEIEDLRETIAETEREREELAEEvrdlrerleelEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 390 E--QQKLWNEELKYARGK-EAIETQLAEYHKLARKLKlipKGAENSKGydfeikfNPEAGANCLVKYRAQVYvPLKELLN 466
Cdd:PRK02224 333 CrvAAQAHNEEAESLREDaDDLEERAEELREEAAELE---SELEEARE-------AVEDRREEIEELEEEIE-ELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 467 ETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQ-----------------KIKEAEEEDEKCA 529
Cdd:PRK02224 402 DAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphveTIEEDRERVEELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 530 SELESLEKHKHLLESTVNQG--LSEAMNELDAVQREYQLVVQ------TTTEERRKvgnNLQRLLEMVATHVGSVEKHlE 601
Cdd:PRK02224 482 AELEDLEEEVEEVEERLERAedLVEAEDRIERLEERREDLEEliaerrETIEEKRE---RAEELRERAAELEAEAEEK-R 557
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 5174457 602 EQIAKVDREYEECMSE------DLSENiKEIRDKYEKKATLIKSSEE 642
Cdd:PRK02224 558 EAAAEAEEEAEEAREEvaelnsKLAEL-KERIESLERIRTLLAAIAD 603
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
264-579 |
3.12e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARLEQEREKEP------NRLESLRKLKASLQG-DVQKYQAYMSNLEShsaiLDQKLNGLNEEIA 336
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESeliklkELAEQLKELEEKLKKyNLEELEKKAEEYEK----LKEKLIKLKGEIK 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 337 RVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQ-QTINKLTKDLEaEQQKLWNEELKYARGKEAIETQLAEY 415
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLK-ELEPFYNEYLELKDAEKELEREEKEL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 416 HKLARKLKLIPKGAENSKGYDFEIKFNPEAganCLVKYRAQVYVPLKELLNETEEEINkalnkkmGLEDTLEQLNAMITE 495
Cdd:PRK03918 622 KKLEEELDKAFEELAETEKRLEELRKELEE---LEKKYSEEEYEELREEYLELSRELA-------GLRAELEELEKRREE 691
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 496 SKRSVRTLKEEVQKLDDlYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNEL--DAVQREYQLVVQTTTE 573
Cdd:PRK03918 692 IKKTLEKLKEELEEREK-AKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIfeELTEGKYSGVRVKAEE 770
|
....*.
gi 5174457 574 ERRKVG 579
Cdd:PRK03918 771 NKVKLF 776
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
247-565 |
3.39e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 247 NAELQSKLKDLFNVDAfKLESLEAKNRALNEQIARLEQEREKEPNRLEsLRKLKASLQGDVQKYQAYMSNLESHSAiLDQ 326
Cdd:COG4717 87 EEEYAELQEELEELEE-ELEELEAELEELREELEKLEKLLQLLPLYQE-LEALEAELAELPERLEELEERLEELRE-LEE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 327 KLNGLNEEIARVELECETIKQENT-----RLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELK- 400
Cdd:COG4717 164 ELEELEAELAELQEELEELLEQLSlateeELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEe 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 401 -------------------------------------------------YARGKEAIETQLAEYHKLARKLKLIPKG-AE 430
Cdd:COG4717 244 rlkearlllliaaallallglggsllsliltiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEElEE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 431 NSKGYDFEIKFNPEAGANCLVKYR------------------AQVYVPLKELLN----ETEEEINKAL---NKKMGLEDT 485
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEelqellreaeeleeelqlEELEQEIAALLAeagvEDEEELRAALeqaEEYQELKEE 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 486 LEQLNAMITESKRSVRTL-----KEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLEStvNQGLSEAMNELDAV 560
Cdd:COG4717 404 LEELEEQLEELLGELEELlealdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE--DGELAELLQELEEL 481
|
....*
gi 5174457 561 QREYQ 565
Cdd:COG4717 482 KAELR 486
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
252-414 |
5.22e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.91 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 252 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQER---EKEPNRLESLR-------------------------KLKASL 303
Cdd:PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIkelEQEIERLEPWGnfdldlslllgfkyvsvfvgtvpedKLEELK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 304 QGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQEntrlqniIDNQKYSVADIERINHERNELQQTINKL 383
Cdd:PRK05771 162 LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLE-------LEEEGTPSELIREIKEELEEIEKERESL 234
|
170 180 190
....*....|....*....|....*....|.
gi 5174457 384 TKDLEAEQQKlWNEELKYARGKEAIETQLAE 414
Cdd:PRK05771 235 LEELKELAKK-YLEELLALYEYLEIELERAE 264
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
249-642 |
5.59e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 249 ELQSKLKDLFNVDAfKLESLEAKNRALnEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLEShsaildqkl 328
Cdd:PRK01156 306 DIENKKQILSNIDA-EINKYHAIIKKL-SVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIES--------- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 329 ngLNEEIARVELECETIKQENTRLQNIidnqkySVADIERINHERNELQQTINKLTKDLEAEQQKlwneelkyargKEAI 408
Cdd:PRK01156 375 --LKKKIEEYSKNIERMSAFISEILKI------QEIDPDAIKKELNEINVKLQDISSKVSSLNQR-----------IRAL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 409 ETQLAEYHKLARKLKliPKGAENSKGYDFEikfnpEAGANCLVKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQ 488
Cdd:PRK01156 436 RENLDELSRNMEMLN--GQSVCPVCGTTLG-----EEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 489 LNAM-ITESKRSVRTLKEEVQKLDDLYQQ--KIKEAEEEDEKCASELESLekHKHLLESTvNQGLSEAMNELDAVQREyq 565
Cdd:PRK01156 509 LESEeINKSINEYNKIESARADLEDIKIKinELKDKHDKYEEIKNRYKSL--KLEDLDSK-RTSWLNALAVISLIDIE-- 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 566 lVVQTTTEERRKVGNNLQRLLEMVATHVGSVEKHLEEQIAKVDREYE------------ECMSEDLSENIKEIRDKYEKK 633
Cdd:PRK01156 584 -TNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANnlnnkyneiqenKILIEKLRGKIDNYKKQIAEI 662
|
....*....
gi 5174457 634 ATLIKSSEE 642
Cdd:PRK01156 663 DSIIPDLKE 671
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
266-411 |
5.71e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.06 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 266 ESLEAKNRALNEQIARLEQEREKepNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETI 345
Cdd:COG5022 917 SDLIENLEFKTELIARLKKLLNN--IDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSEL 994
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174457 346 KQENTRLQNIIDNQK---YSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQ 411
Cdd:COG5022 995 KNFKKELAELSKQYGalqESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQ 1063
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
474-562 |
5.87e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 38.65 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 474 KALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLddlyQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEA 553
Cdd:COG1842 88 EALERKAELEAQAEALEAQLAQLEEQVEKLKEALRQL----ESKLEELKAKKDTLKARAKAAKAQEKVNEALSGIDSDDA 163
|
....*....
gi 5174457 554 MNELDAVQR 562
Cdd:COG1842 164 TSALERMEE 172
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
472-587 |
7.23e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.42 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 472 INKAlnKKMGLEDTlEQLNAMITESKRSVRTLKEEVQKLddlyQQKIKEAEEEDEKCASELESLEKHKHLL----ESTVN 547
Cdd:PRK00409 504 IEEA--KKLIGEDK-EKLNELIASLEELERELEQKAEEA----EALLKEAEKLKEELEEKKEKLQEEEDKLleeaEKEAQ 576
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 5174457 548 QGLSEAMNELDAVQREY---------QLVVQTTTEERRKVGNNLQRLLE 587
Cdd:PRK00409 577 QAIKEAKKEADEIIKELrqlqkggyaSVKAHELIEARKRLNKANEKKEK 625
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
266-612 |
7.82e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.32 E-value: 7.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 266 ESLEAKNRALNEQIARLEQEREKEpnrLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETI 345
Cdd:pfam05483 313 KALEEDLQIATKTICQLTEEKEAQ---MEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 346 KQENTRLQNIIDNQKYSVADIERINHERNEL---QQTINKLTKDLEAEQQKLWNeeLKYARGKE---------AIETQLA 413
Cdd:pfam05483 390 SSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIAEELKGKEQELIF--LLQAREKEihdleiqltAIKTSEE 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 414 EYHKLARKLKlipKGAENSKGYDFEIKFNPEAGA---NCLVKYRAQVYVPLKEllneTEEEINKALNKKMGLEDTLEQLN 490
Cdd:pfam05483 468 HYLKEVEDLK---TELEKEKLKNIELTAHCDKLLlenKELTQEASDMTLELKK----HQEDIINCKKQEERMLKQIENLE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 491 AMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNE---LDAVQREYQLV 567
Cdd:pfam05483 541 EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKnknIEELHQENKAL 620
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 5174457 568 VQTTTEERRKVgNNLQRLLEMVATHVGSVEKHLEEQIAKVDREYE 612
Cdd:pfam05483 621 KKKGSAENKQL-NAYEIKVNKLELELASAKQKFEEIIDNYQKEIE 664
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
213-585 |
8.11e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.25 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 213 EETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDL--------FNVDAFK--LESLEAKNRALNEQIARL 282
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELeseleearEAVEDRReeIEELEEEIEELRERFGDA 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 283 EQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLE-------------------------SHSAILDQKlnglNEEIAR 337
Cdd:PRK02224 404 PVDLGNAEDFLEELREERDELREREAELEATLRTARerveeaealleagkcpecgqpvegsPHVETIEED----RERVEE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 338 VELECETIKQENTRLQNIIDNQKYSV---ADIERINHERNELQQTINKLTKDLEAEQQKLwnEELKYArgKEAIETQLAE 414
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVeaeDRIERLEERREDLEELIAERRETIEEKRERA--EELRER--AAELEAEAEE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 415 YHKLARKLklipkgAENSKGYDFEIK-FNPEAGANCLVKYRAQVYVPLKELLNETEEEINKalnkkmgLEDTLEQLNAMI 493
Cdd:PRK02224 556 KREAAAEA------EEEAEEAREEVAeLNSKLAELKERIESLERIRTLLAAIADAEDEIER-------LREKREALAELN 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 494 TESKRSVRTLKEEVQKLDDLY--------QQKIKEAEEEDEKCASELESLEKHKHLLESTVNqGLSEAMNELDAVQreyq 565
Cdd:PRK02224 623 DERRERLAEKRERKRELEAEFdearieeaREDKERAEEYLEQVEEKLDELREERDDLQAEIG-AVENELEELEELR---- 697
|
410 420
....*....|....*....|
gi 5174457 566 lvvqtttEERRKVGNNLQRL 585
Cdd:PRK02224 698 -------ERREALENRVEAL 710
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
241-420 |
8.23e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 38.90 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 241 DSFDEMNAELQSKLKDLFNVDAfKLESLEAKNRALNEQIarLEQEREKEPNRLE------SLRKLKASLQGDVQKYQAym 314
Cdd:pfam19220 62 AAYGKLRRELAGLTRRLSAAEG-ELEELVARLAKLEAAL--REAEAAKEELRIElrdktaQAEALERQLAAETEQNRA-- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 315 snLESHSAILDQKLNGLNEEIARVELECETIK-------QENTRLQNIIDNQKYSVADIERINherNELQQTINKLTKDL 387
Cdd:pfam19220 137 --LEEENKALREEAQAAEKALQRAEGELATARerlalleQENRRLQALSEEQAAELAELTRRL---AELETQLDATRARL 211
|
170 180 190
....*....|....*....|....*....|...
gi 5174457 388 EAEQQKLWNEELKYARGKEAIETQLaEYHKLAR 420
Cdd:pfam19220 212 RALEGQLAAEQAERERAEAQLEEAV-EAHRAER 243
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
264-421 |
8.27e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 39.29 E-value: 8.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 264 KLESLEAKNRALNEQIARL---------------EQER-EKEPNRLESLRKLKASLQgdvqkyQAYmsnleshsAILDQK 327
Cdd:COG0497 173 ELEELRADEAERARELDLLrfqleeleaaalqpgEEEElEEERRRLSNAEKLREALQ------EAL--------EALSGG 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 328 LNGLNEEIARVELECETIKQENTRLQNIIDNqkysvadIERINHERNELQQTINKLTKDLEAEQQKLwneelkyargkEA 407
Cdd:COG0497 239 EGGALDLLGQALRALERLAEYDPSLAELAER-------LESALIELEEAASELRRYLDSLEFDPERL-----------EE 300
|
170
....*....|....
gi 5174457 408 IETQLAEYHKLARK 421
Cdd:COG0497 301 VEERLALLRRLARK 314
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
329-638 |
8.77e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.28 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 329 NGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLE----------------AEQQ 392
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEklekevkeleelkeeiEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 393 KLWNEELKYARGKEA----IETQLAEYHKLARKLKLIPKGAENSKGYDFE-IKFNPEAGANCLVKYRAQVYVP-LKELLN 466
Cdd:PRK03918 245 KELESLEGSKRKLEEkireLEERIEELKKEIEELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSrLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 467 ETEEEINKALNKKMGLEDT---LEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLE 543
Cdd:PRK03918 325 GIEERIKELEEKEERLEELkkkLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 544 STVNQ-------------GLSEAMNELDAVQREYQLVVQTTTEERRKvgnnlqRLLEMVATHVGSVEKHLEEQIAKVdre 610
Cdd:PRK03918 405 EEISKitarigelkkeikELKKAIEELKKAKGKCPVCGRELTEEHRK------ELLEEYTAELKRIEKELKEIEEKE--- 475
|
330 340
....*....|....*....|....*...
gi 5174457 611 yeecmsEDLSENIKEIRDKYEKKATLIK 638
Cdd:PRK03918 476 ------RKLRKELRELEKVLKKESELIK 497
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
241-629 |
9.36e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.32 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 241 DSFDEMNAELQSKLKDLFNVDAFKLE---SLEAKNRALNEQIARLEQEREKEpNRLESLRKLKASLQGDVQKYQAYMSNL 317
Cdd:pfam05483 377 DQLKIITMELQKKSSELEEMTKFKNNkevELEELKKILAEDEKLLDEKKQFE-KIAEELKGKEQELIFLLQAREKEIHDL 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 318 ESHSAILDQKLNGLNEEIARVELECETIKQENTRLqniidnqkysVADIERINHERNELQQTINKLTKDLEAEQQKLWNE 397
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIEL----------TAHCDKLLLENKELTQEASDMTLELKKHQEDIINC 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 398 ELKYARGKEAIETQLAEYHKLARKLKLI---------------PKGAENSKGYDFEIKFNPEAGANCLVK---YRAQVYV 459
Cdd:pfam05483 526 KKQEERMLKQIENLEEKEMNLRDELESVreefiqkgdevkcklDKSEENARSIEYEVLKKEKQMKILENKcnnLKKQIEN 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 460 PLKELlnETEEEINKALNKKMGLEDtlEQLNAM---ITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLE 536
Cdd:pfam05483 606 KNKNI--EELHQENKALKKKGSAEN--KQLNAYeikVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAK 681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174457 537 -------KHKHLLESTVNQGLSEAMNELDAVQREYQLVVQ----------TTTEERRKVGNNLQRLLEMVATHVGSVEKH 599
Cdd:pfam05483 682 aiadeavKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEerdselglykNKEQEQSSAKAALEIELSNIKAELLSLKKQ 761
|
410 420 430
....*....|....*....|....*....|
gi 5174457 600 LEeqiakVDREYEECMSEDLSENIKEIRDK 629
Cdd:pfam05483 762 LE-----IEKEEKEKLKMEAKENTAILKDK 786
|
|
| |
