NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|5174607|ref|NP_005958|]
View 

NGFI-A-binding protein 2 isoform 1 [Homo sapiens]

Protein Classification

NCD1 and NCD2 domain-containing protein( domain architecture ID 10522666)

NCD1 and NCD2 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NCD2 pfam04905
NAB conserved region 2 (NCD2); Nab1 and Nab2 are co-repressors that specifically interact with ...
 236-364 9.46e-68

NAB conserved region 2 (NCD2); Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This family consists of NAB conserved region 2, near the C-terminus of the protein. It is necessary for transcriptional repression by the Nab proteins. It is also required for transcription activation by Nab proteins at Nab-activated promoters.


:

Pssm-ID: 461474  Cd Length: 125  Bit Score: 214.14  E-value: 9.46e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174607    236 RLEPEMVRMVVESVERIFRSFPRGDAgevtSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSIIYGRFDSKRREGKQL 315
Cdd:pfam04905   1 VLSEAQVQRVAECAERLVRTLPRLDP----KLLKNKKKLAKDVEHIMEMSEDDPRRMEEIRKYSAIYGRFDSKRRPEKPL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 5174607    316 SLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSLKGSR 364
Cdd:pfam04905  77 TLHEVTVNEAAAQLCMRDPALLTRRDELFPLARQVVRDAGYHYSKSHSR 125
NCD1 pfam04904
NAB conserved region 1 (NCD1); Nab1 and Nab2 are co-repressors that specifically interact with ...
 36-114 1.21e-49

NAB conserved region 1 (NCD1); Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This region consists of the N-terminal NAB conserved region 1, which interacts with the EGR1 inhibitory domain (R1). It may also mediate multimerization.


:

Pssm-ID: 461473  Cd Length: 79  Bit Score: 164.94  E-value: 1.21e-49
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174607     36 LPRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFS 114
Cdd:pfam04904   1 TPSTLSELQLYRVLQRANLLQYYDTFISQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWVTNPSAFQ 79
 
Name Accession Description Interval E-value
NCD2 pfam04905
NAB conserved region 2 (NCD2); Nab1 and Nab2 are co-repressors that specifically interact with ...
 236-364 9.46e-68

NAB conserved region 2 (NCD2); Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This family consists of NAB conserved region 2, near the C-terminus of the protein. It is necessary for transcriptional repression by the Nab proteins. It is also required for transcription activation by Nab proteins at Nab-activated promoters.


Pssm-ID: 461474  Cd Length: 125  Bit Score: 214.14  E-value: 9.46e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174607    236 RLEPEMVRMVVESVERIFRSFPRGDAgevtSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSIIYGRFDSKRREGKQL 315
Cdd:pfam04905   1 VLSEAQVQRVAECAERLVRTLPRLDP----KLLKNKKKLAKDVEHIMEMSEDDPRRMEEIRKYSAIYGRFDSKRRPEKPL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 5174607    316 SLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSLKGSR 364
Cdd:pfam04905  77 TLHEVTVNEAAAQLCMRDPALLTRRDELFPLARQVVRDAGYHYSKSHSR 125
NCD1 pfam04904
NAB conserved region 1 (NCD1); Nab1 and Nab2 are co-repressors that specifically interact with ...
 36-114 1.21e-49

NAB conserved region 1 (NCD1); Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This region consists of the N-terminal NAB conserved region 1, which interacts with the EGR1 inhibitory domain (R1). It may also mediate multimerization.


Pssm-ID: 461473  Cd Length: 79  Bit Score: 164.94  E-value: 1.21e-49
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174607     36 LPRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFS 114
Cdd:pfam04904   1 TPSTLSELQLYRVLQRANLLQYYDTFISQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWVTNPSAFQ 79
SAM_KIF24-like cd09541
SAM domain of KIF24-like subfamily; SAM (sterile alpha motif) domain of KIF24 subfamily is a ...
 44-72 3.83e-03

SAM domain of KIF24-like subfamily; SAM (sterile alpha motif) domain of KIF24 subfamily is a putative protein-protein interaction domain. This subfamily includes proteins related to human kinesin-like protein KIF24. SAM domain is located at the N-terminus followed by kinesin motor domain. Kinesins are proteins involved in a number of different cell processes including microtubule dynamics and axonal transport. Kinesins of this group belong to N-type; they drive microtubule plus end-directed transport. SAM apparently plays the role of adaptor or scaffold domain. In many cases SAM is known as a mediator of dimerization/oligomerization.


Pssm-ID: 188940  Cd Length: 60  Bit Score: 35.74  E-value: 3.83e-03
                        10        20
                ....*....|....*....|....*....
gi 5174607   44 QLYRVLQRANLLSYYETFIQQGGDDVQQL 72
Cdd:cd09541   2 VLYEWLEEAGLQHYYPAFAAGGVTSIEAL 30
 
Name Accession Description Interval E-value
NCD2 pfam04905
NAB conserved region 2 (NCD2); Nab1 and Nab2 are co-repressors that specifically interact with ...
 236-364 9.46e-68

NAB conserved region 2 (NCD2); Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This family consists of NAB conserved region 2, near the C-terminus of the protein. It is necessary for transcriptional repression by the Nab proteins. It is also required for transcription activation by Nab proteins at Nab-activated promoters.


Pssm-ID: 461474  Cd Length: 125  Bit Score: 214.14  E-value: 9.46e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5174607    236 RLEPEMVRMVVESVERIFRSFPRGDAgevtSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSIIYGRFDSKRREGKQL 315
Cdd:pfam04905   1 VLSEAQVQRVAECAERLVRTLPRLDP----KLLKNKKKLAKDVEHIMEMSEDDPRRMEEIRKYSAIYGRFDSKRRPEKPL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 5174607    316 SLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSLKGSR 364
Cdd:pfam04905  77 TLHEVTVNEAAAQLCMRDPALLTRRDELFPLARQVVRDAGYHYSKSHSR 125
NCD1 pfam04904
NAB conserved region 1 (NCD1); Nab1 and Nab2 are co-repressors that specifically interact with ...
 36-114 1.21e-49

NAB conserved region 1 (NCD1); Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This region consists of the N-terminal NAB conserved region 1, which interacts with the EGR1 inhibitory domain (R1). It may also mediate multimerization.


Pssm-ID: 461473  Cd Length: 79  Bit Score: 164.94  E-value: 1.21e-49
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 5174607     36 LPRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFS 114
Cdd:pfam04904   1 TPSTLSELQLYRVLQRANLLQYYDTFISQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWVTNPSAFQ 79
SAM_KIF24-like cd09541
SAM domain of KIF24-like subfamily; SAM (sterile alpha motif) domain of KIF24 subfamily is a ...
 44-72 3.83e-03

SAM domain of KIF24-like subfamily; SAM (sterile alpha motif) domain of KIF24 subfamily is a putative protein-protein interaction domain. This subfamily includes proteins related to human kinesin-like protein KIF24. SAM domain is located at the N-terminus followed by kinesin motor domain. Kinesins are proteins involved in a number of different cell processes including microtubule dynamics and axonal transport. Kinesins of this group belong to N-type; they drive microtubule plus end-directed transport. SAM apparently plays the role of adaptor or scaffold domain. In many cases SAM is known as a mediator of dimerization/oligomerization.


Pssm-ID: 188940  Cd Length: 60  Bit Score: 35.74  E-value: 3.83e-03
                        10        20
                ....*....|....*....|....*....
gi 5174607   44 QLYRVLQRANLLSYYETFIQQGGDDVQQL 72
Cdd:cd09541   2 VLYEWLEEAGLQHYYPAFAAGGVTSIEAL 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH