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Conserved domains on  [gi|19913432|ref|NP_004682|]
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V-type proton ATPase subunit d 1 [Homo sapiens]

Protein Classification

V0D/AC39 family V-type ATPase subunit( domain architecture ID 10488051)

V0D/AC39 family V-type ATPase subunit such as Deinococcus radiodurans V-type ATPase subunit C, and eukaryotic V-type proton ATPase subunit d that is part of the integral membrane V0 proton pore complex of vacuolar ATPase, which is responsible for acidifying a variety of intracellular compartments in cells and providing the energy required for transport in the vacuolar system

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
vATP-synt_AC39 pfam01992
ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP ...
16-344 9.25e-105

ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae.


:

Pssm-ID: 426553  Cd Length: 333  Bit Score: 310.74  E-value: 9.25e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    16 LEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLAS 95
Cdd:pfam01992   1 LNARVRAMESKLLTEEDYERLLQCESLEEAVRYLKETGYGDFLADEESPLHRGDIEKALRRELAKTFEKLRRFAPGLSRE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    96 FLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNAILvDTPLAAFFQDCISEQDl 173
Cdd:pfam01992  81 FLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLGTLsaLDLDKLIEAKDVEELVEALL-GTPYAEALEEALDELE- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   174 DEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFG-TELSKEDRAKLFPHCGRLYPEGL 252
Cdd:pfam01992 159 ETGDLQLIENALDKAYYEDLYKFCKKLGGKTAEILREYLGFEIDLRNIKIILRSKKyGKLSPEDIYKLLIPGGSLSPEEL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   253 AQLARADDYEQVKNVADYYPeYKLLFEGAGSNPGD--KTLEDRFFEHEVKLNK-LAFLNQFHFGVFYAFVKLKEQECRNI 329
Cdd:pfam01992 239 KALAEAEDVEEVLAALEGTP-YGELLSEALEELTGslSALERALDNYLLELAKkLARYQPFSIGPVLAYLKLKEQEIRNL 317
                         330
                  ....*....|....*.
gi 19913432   330 VWIAECIAQR-HRAKI 344
Cdd:pfam01992 318 RIIAEGKRYGlPPEEI 333
 
Name Accession Description Interval E-value
vATP-synt_AC39 pfam01992
ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP ...
16-344 9.25e-105

ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae.


Pssm-ID: 426553  Cd Length: 333  Bit Score: 310.74  E-value: 9.25e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    16 LEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLAS 95
Cdd:pfam01992   1 LNARVRAMESKLLTEEDYERLLQCESLEEAVRYLKETGYGDFLADEESPLHRGDIEKALRRELAKTFEKLRRFAPGLSRE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    96 FLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNAILvDTPLAAFFQDCISEQDl 173
Cdd:pfam01992  81 FLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLGTLsaLDLDKLIEAKDVEELVEALL-GTPYAEALEEALDELE- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   174 DEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFG-TELSKEDRAKLFPHCGRLYPEGL 252
Cdd:pfam01992 159 ETGDLQLIENALDKAYYEDLYKFCKKLGGKTAEILREYLGFEIDLRNIKIILRSKKyGKLSPEDIYKLLIPGGSLSPEEL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   253 AQLARADDYEQVKNVADYYPeYKLLFEGAGSNPGD--KTLEDRFFEHEVKLNK-LAFLNQFHFGVFYAFVKLKEQECRNI 329
Cdd:pfam01992 239 KALAEAEDVEEVLAALEGTP-YGELLSEALEELTGslSALERALDNYLLELAKkLARYQPFSIGPVLAYLKLKEQEIRNL 317
                         330
                  ....*....|....*.
gi 19913432   330 VWIAECIAQR-HRAKI 344
Cdd:pfam01992 318 RIIAEGKRYGlPPEEI 333
NtpC COG1527
Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]; Archaeal ...
12-337 1.41e-18

Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 is part of the Pathway/BioSystem: A/V-type ATP synthase


Pssm-ID: 441136  Cd Length: 348  Bit Score: 85.39  E-value: 1.41e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  12 DNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASP-LTVSVIDDRLKEKMVVEFRHMRNHAY 90
Cdd:COG1527   6 NYAYINARIRAMESKLLKEEDYERLLEAESLEEIARFLKETGYGEELDELAEReSGRDLLEKALNRNLAKTYRKLLEFAP 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  91 EPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNAiLVDTPLAAFFQDCI 168
Cdd:COG1527  86 GELKEFVKLYLLRYDIHNLKVILRGKYSGEDLEEIRELLIPAGELseEDLKKLLEAKSVEELVEA-LEGTPYYEALEEAL 164
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432 169 SEQDlDEMNIEIIRNTLYKAYLESFYKFcTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLF-PHCGRL 247
Cdd:COG1527 165 EEYE-ETGDLFPIENALDRAYYENLLEL-AKKKGKDRKLLLEYLGTEIDLLNLRTILRLKRYGLSPEEIEAYLiPGGYRI 242
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432 248 YPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEdrfFEHEV------KLNKLAFLNQFHFGVFYAFVKL 321
Cdd:COG1527 243 SEKELKELAEAEDVEELLEALEGTPYGKLLSELEELEETGSLSE---FERALdrylleYAKKLSKYYPFSIGPVLAYLLA 319
                       330
                ....*....|....*.
gi 19913432 322 KEQECRNIVWIAECIA 337
Cdd:COG1527 320 KENEVKNLRIIAEGKR 335
AhaC TIGR02923
ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, ...
15-333 1.49e-11

ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG), which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.


Pssm-ID: 274352  Cd Length: 343  Bit Score: 64.77  E-value: 1.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    15 YLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLT-VSVIDDRLKEKMVVEFRHMRNHAYEPL 93
Cdd:TIGR02923   7 YPNARVRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYgVDLIEHALDANLAKTYEKLFRISPGAS 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    94 ASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNAiLVDTPLAAFFQDCISEQ 171
Cdd:TIGR02923  87 RDLIRLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFleKRIKELAEAKTIEEIVEA-LEGTPYYGPLQEALAGN 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   172 DldemNIEIIRNTLYKAYLESFYKfctLLGGTTADAMCPILEF---EADRRAFIITINSFGTELSKEDRAKLF-PHCGRL 247
Cdd:TIGR02923 166 G----DLSPIENELDRMYYEKLLK---YVGSPSDDETKLFTEFiktEVDIRNLKTLLRLKAAGLSPDEIMPYTiPGGYEL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   248 YPEGLAQLARADDYEQVKNVADYYpEYKLLFEGAGSNPGDK--TLEDRFFEHEVKL-NKLAFLNQFHFGVFYAFVKLKEQ 324
Cdd:TIGR02923 239 DEEKLAPLAHIESIDEVVSALDGT-KYGEDISEVLSEEEKSvaVFERALDEYLIKMaTKLSLRYPLSVGPVLGYILKKER 317

                  ....*....
gi 19913432   325 ECRNIVWIA 333
Cdd:TIGR02923 318 EVRNLRAIA 326
PRK01198 PRK01198
V-type ATP synthase subunit C; Provisional
20-346 1.40e-09

V-type ATP synthase subunit C; Provisional


Pssm-ID: 234917  Cd Length: 352  Bit Score: 58.73  E-value: 1.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   20 VRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLT-VSVIDDRLKEKMVVEFRHMRNHAYEPLASFLD 98
Cdd:PRK01198  18 VRVREAKLLDREKYERLLEMKSLEEIIRFLEETEYKEEIDELGSRYSgPDLIEKALNRNLAKTYELLLEISPGRLKELVD 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   99 FITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNaILVDT----PLAAFFQDCISEQD 172
Cdd:PRK01198  98 VYLRKWDIHNIKTLLRGKILGLDAEEIEELLIPAGELdlEKLKELLEAKSVEEIVK-ILEGTeyyeVLEEALEDYEETGD 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  173 LDEMNIEiirntLYKAYLESFYKFCTLLGGTTAdamcPILEF---EADRRAFIITINSFGTELSKEDRAKLFPHCGRLYP 249
Cdd:PRK01198 177 LQPIENA-----LDKYYYENLLEIASPKDIDEK----LLLEYvrtEIDITNIKTLLRLKAQGLSADFIEKVLIPGGSLDE 247
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  250 EGLAQLArADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDrfFEHEVK---LNKLAFLNQFH-FGV--FYAFVKLKE 323
Cdd:PRK01198 248 EKLKELL-AEDIEELVSALEGTKYGDVLSEALEEYEETGSLSV--FEKALDnylLEYMKKLSKRYpFSVepILGYILAKE 324
                        330       340
                 ....*....|....*....|...
gi 19913432  324 QECRNIVWIAeciaqrhRAKIDN 346
Cdd:PRK01198 325 REVKNLRIIA-------RGKENG 340
 
Name Accession Description Interval E-value
vATP-synt_AC39 pfam01992
ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP ...
16-344 9.25e-105

ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae.


Pssm-ID: 426553  Cd Length: 333  Bit Score: 310.74  E-value: 9.25e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    16 LEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLAS 95
Cdd:pfam01992   1 LNARVRAMESKLLTEEDYERLLQCESLEEAVRYLKETGYGDFLADEESPLHRGDIEKALRRELAKTFEKLRRFAPGLSRE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    96 FLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNAILvDTPLAAFFQDCISEQDl 173
Cdd:pfam01992  81 FLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLGTLsaLDLDKLIEAKDVEELVEALL-GTPYAEALEEALDELE- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   174 DEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFG-TELSKEDRAKLFPHCGRLYPEGL 252
Cdd:pfam01992 159 ETGDLQLIENALDKAYYEDLYKFCKKLGGKTAEILREYLGFEIDLRNIKIILRSKKyGKLSPEDIYKLLIPGGSLSPEEL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   253 AQLARADDYEQVKNVADYYPeYKLLFEGAGSNPGD--KTLEDRFFEHEVKLNK-LAFLNQFHFGVFYAFVKLKEQECRNI 329
Cdd:pfam01992 239 KALAEAEDVEEVLAALEGTP-YGELLSEALEELTGslSALERALDNYLLELAKkLARYQPFSIGPVLAYLKLKEQEIRNL 317
                         330
                  ....*....|....*.
gi 19913432   330 VWIAECIAQR-HRAKI 344
Cdd:pfam01992 318 RIIAEGKRYGlPPEEI 333
NtpC COG1527
Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]; Archaeal ...
12-337 1.41e-18

Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 is part of the Pathway/BioSystem: A/V-type ATP synthase


Pssm-ID: 441136  Cd Length: 348  Bit Score: 85.39  E-value: 1.41e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  12 DNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASP-LTVSVIDDRLKEKMVVEFRHMRNHAY 90
Cdd:COG1527   6 NYAYINARIRAMESKLLKEEDYERLLEAESLEEIARFLKETGYGEELDELAEReSGRDLLEKALNRNLAKTYRKLLEFAP 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  91 EPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNAiLVDTPLAAFFQDCI 168
Cdd:COG1527  86 GELKEFVKLYLLRYDIHNLKVILRGKYSGEDLEEIRELLIPAGELseEDLKKLLEAKSVEELVEA-LEGTPYYEALEEAL 164
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432 169 SEQDlDEMNIEIIRNTLYKAYLESFYKFcTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLF-PHCGRL 247
Cdd:COG1527 165 EEYE-ETGDLFPIENALDRAYYENLLEL-AKKKGKDRKLLLEYLGTEIDLLNLRTILRLKRYGLSPEEIEAYLiPGGYRI 242
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432 248 YPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEdrfFEHEV------KLNKLAFLNQFHFGVFYAFVKL 321
Cdd:COG1527 243 SEKELKELAEAEDVEELLEALEGTPYGKLLSELEELEETGSLSE---FERALdrylleYAKKLSKYYPFSIGPVLAYLLA 319
                       330
                ....*....|....*.
gi 19913432 322 KEQECRNIVWIAECIA 337
Cdd:COG1527 320 KENEVKNLRIIAEGKR 335
AhaC TIGR02923
ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, ...
15-333 1.49e-11

ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG), which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.


Pssm-ID: 274352  Cd Length: 343  Bit Score: 64.77  E-value: 1.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    15 YLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLT-VSVIDDRLKEKMVVEFRHMRNHAYEPL 93
Cdd:TIGR02923   7 YPNARVRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYgVDLIEHALDANLAKTYEKLFRISPGAS 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432    94 ASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNAiLVDTPLAAFFQDCISEQ 171
Cdd:TIGR02923  87 RDLIRLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFleKRIKELAEAKTIEEIVEA-LEGTPYYGPLQEALAGN 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   172 DldemNIEIIRNTLYKAYLESFYKfctLLGGTTADAMCPILEF---EADRRAFIITINSFGTELSKEDRAKLF-PHCGRL 247
Cdd:TIGR02923 166 G----DLSPIENELDRMYYEKLLK---YVGSPSDDETKLFTEFiktEVDIRNLKTLLRLKAAGLSPDEIMPYTiPGGYEL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   248 YPEGLAQLARADDYEQVKNVADYYpEYKLLFEGAGSNPGDK--TLEDRFFEHEVKL-NKLAFLNQFHFGVFYAFVKLKEQ 324
Cdd:TIGR02923 239 DEEKLAPLAHIESIDEVVSALDGT-KYGEDISEVLSEEEKSvaVFERALDEYLIKMaTKLSLRYPLSVGPVLGYILKKER 317

                  ....*....
gi 19913432   325 ECRNIVWIA 333
Cdd:TIGR02923 318 EVRNLRAIA 326
PRK01198 PRK01198
V-type ATP synthase subunit C; Provisional
20-346 1.40e-09

V-type ATP synthase subunit C; Provisional


Pssm-ID: 234917  Cd Length: 352  Bit Score: 58.73  E-value: 1.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   20 VRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLT-VSVIDDRLKEKMVVEFRHMRNHAYEPLASFLD 98
Cdd:PRK01198  18 VRVREAKLLDREKYERLLEMKSLEEIIRFLEETEYKEEIDELGSRYSgPDLIEKALNRNLAKTYELLLEISPGRLKELVD 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432   99 FITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSF--EQMEAVNIAQTPAELYNaILVDT----PLAAFFQDCISEQD 172
Cdd:PRK01198  98 VYLRKWDIHNIKTLLRGKILGLDAEEIEELLIPAGELdlEKLKELLEAKSVEEIVK-ILEGTeyyeVLEEALEDYEETGD 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  173 LDEMNIEiirntLYKAYLESFYKFCTLLGGTTAdamcPILEF---EADRRAFIITINSFGTELSKEDRAKLFPHCGRLYP 249
Cdd:PRK01198 177 LQPIENA-----LDKYYYENLLEIASPKDIDEK----LLLEYvrtEIDITNIKTLLRLKAQGLSADFIEKVLIPGGSLDE 247
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19913432  250 EGLAQLArADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDrfFEHEVK---LNKLAFLNQFH-FGV--FYAFVKLKE 323
Cdd:PRK01198 248 EKLKELL-AEDIEELVSALEGTKYGDVLSEALEEYEETGSLSV--FEKALDnylLEYMKKLSKRYpFSVepILGYILAKE 324
                        330       340
                 ....*....|....*....|...
gi 19913432  324 QECRNIVWIAeciaqrhRAKIDN 346
Cdd:PRK01198 325 REVKNLRIIA-------RGKENG 340
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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