|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
156-465 |
6.31e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.63 E-value: 6.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 156 NYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKpfsllplrQAVRLNPDNGYIKVLLALKLQDEGQEAE 235
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQ--------KLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 236 GEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprgqnr 315
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ----------------- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 316 EKLDKmirsAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLcmkpvveetmqdihfhygrfqefqkKSD 395
Cdd:COG2956 158 GDYDE----AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERAL-------------------------EQD 208
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 396 VNAIIHYLKAIKIEQASLTRDKSINSLKKLvlrkLRRKALDLESLSLLGFVYKLEGNmNEALEYYERALR 465
Cdd:COG2956 209 PDYLPALPRLAELYEKLGDPEEALELLRKA----LELDPSDDLLLALADLLERKEGL-EAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
222-469 |
9.22e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.24 E-value: 9.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 222 LLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiq 301
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 302 ikeatkgqprgqnrEKLDKmirsAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPvveetmQDIH 381
Cdd:COG2956 90 --------------GLLDR----AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP------ENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 382 FHYGRFQEFQKKSDV-NAIIHYLKAIKIEQAS----------LTRDKSINSLKKLVLRKLRRKALDLESLSLLGFVYKLE 450
Cdd:COG2956 146 AYCELAELYLEQGDYdEAIEALEKALKLDPDCarallllaelYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
|
250
....*....|....*....
gi 116534937 451 GNMNEALEYYERALRLAAD 469
Cdd:COG2956 226 GDPEEALELLRKALELDPS 244
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
55-466 |
6.75e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.43 E-value: 6.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 55 HNLLAYVKHLKGQNEEALKSLKEAENLmqeeHDNQANVRSlvtwgNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRY 134
Cdd:TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIAL----RPNNIAVLL-----ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 135 RmecpeidceegwALLKCGGKNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNP 214
Cdd:TIGR02917 267 K------------ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY--------LNQILKYAP 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 215 DNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLC 294
Cdd:TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 295 YKAQmiqikeatkGQPRGqnrekldkmirsAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKA---EENFQKLLCMKP 371
Cdd:TIGR02917 407 KLSQ---------GDPSE------------AIADLETAAQLDPELGRADLLLILSYLRSGQFDKAlaaAKKLEKKQPDNA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 372 VVEETMQDIHfhygrfqeFQKKSDVNAIIHYLKAIKIEQASLT----------RDKSINSLKKLVLRKLRRKALDLESLS 441
Cdd:TIGR02917 466 SLHNLLGAIY--------LGKGDLAKAREAFEKALSIEPDFFPaaanlaridiQEGNPDDAIQRFEKVLTIDPKNLRAIL 537
|
410 420
....*....|....*....|....*
gi 116534937 442 LLGFVYKLEGNMNEALEYYERALRL 466
Cdd:TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAEL 562
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-469 |
1.16e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.42 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 210 VRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHH 289
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 290 QIGLCYKAQmiqikeatkgqprGQNREkldkmirsAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCM 369
Cdd:COG0457 81 NLGLALQAL-------------GRYEE--------ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 370 KPvveeTMQDIHFHYGRFQEFQKKSDvNAIIHYLKAIKIEQASLTRDKSINSLKKLVLRKLRRKALDLESLSLLGFVYKL 449
Cdd:COG0457 140 DP----DDADALYNLGIALEKLGRYE-EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
250 260
....*....|....*....|
gi 116534937 450 EGNMNEALEYYERALRLAAD 469
Cdd:COG0457 215 TLAALAELLLLALALLLALR 234
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
51-287 |
1.94e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.53 E-value: 1.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 51 SVGIHNLLAYVKHLKGQNEEALKSLkeaENLMQEEHDNQANVRSLvtwgnfAWMYYHMGRLAEAQTYLDKVENICKKLSN 130
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIH---QKLLERDPDRAEALLEL------AQDYLKAGLLDRAEELLEKLLELDPDDAE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 131 PFRYRMECPEIDceegwallkcggKNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAV 210
Cdd:COG2956 112 ALRLLAEIYEQE------------GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA--------LEKAL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116534937 211 RLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLL 287
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
146-477 |
5.56e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.27 E-value: 5.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 146 GWALLKCGgkNYERAKACFEKVLEVDPENpessagyAISAYRLDGFKLATKNHKPfSLLPLRQAVRLN------------ 213
Cdd:TIGR02917 370 GEAYLALG--DFEKAAEYLAKATELDPEN-------AAARTQLGISKLSQGDPSE-AIADLETAAQLDpelgradlllil 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 214 ----------------------PDNGYIKVLLALKLQDEGQEAEGEKYIEEAL----ANMSSQTYVFRYAAKfyrrKGSV 267
Cdd:TIGR02917 440 sylrsgqfdkalaaakklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALsiepDFFPAAANLARIDIQ----EGNP 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 268 DKALELLKKALQETPTSVLLHHQIGLCYKAQ------MIQIKEATKGQPRGQNREKL-------DKMIRSAIFHFESAVE 334
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTgneeeaVAWLEKAAELNPQEIEPALAlaqyylgKGQLKKALAILNEAAD 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 335 KKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPVVEEtmqdIHFHYGRFQEFQKKSDvNAIIHYLKAIKIE----- 409
Cdd:TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL----ALLLLADAYAVMKNYA-KAITSLKRALELKpdnte 670
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116534937 410 ----QASL-TRDKSINSLKKLVLRKLRRKALDLESLSLLGFVYKLEGNMNEALEYYERALRLAADFENSVRQG 477
Cdd:TIGR02917 671 aqigLAQLlLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
146-298 |
5.79e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.49 E-value: 5.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 146 GWALLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGYIKVLLAL 225
Cdd:COG0457 15 GLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALAD--------YEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116534937 226 KLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQ 298
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
155-392 |
1.04e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.22 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 155 KNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGYIKVLLALKLQDEGQEA 234
Cdd:COG2956 56 GEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEEL--------LEKLLELDPDDAEALRLLAEIYEQEGDWE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 235 EGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprgqn 314
Cdd:COG2956 128 KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ---------------- 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 315 rekldKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKP--VVEETMQDIHFHYGRFQEFQK 392
Cdd:COG2956 192 -----GDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPsdDLLLALADLLERKEGLEAALA 266
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
97-280 |
1.18e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.64 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 97 TWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRYRmecpeidceeGWALLKCGgkNYERAKACFEKVLEVDPENPE 176
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL----------GLAYLRLG--RYEEALADYEQALELDPDDAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 177 SSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRY 256
Cdd:COG0457 78 ALNNLGLALQALGRYEEALED--------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN 149
|
170 180
....*....|....*....|....
gi 116534937 257 AAKFYRRKGSVDKALELLKKALQE 280
Cdd:COG0457 150 LGIALEKLGRYEEALELLEKLEAA 173
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
69-353 |
1.35e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.94 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 69 EEALKSLKEAENLMQEEHDNQANVRSLVTWGNFAWMYYHMGRLA-----EAQTYLDKVENICKKLSNPF--RYRMECPEI 141
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLAllllaALAEAAAAALLALAAGEAAAaaAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 142 DCEEGWALLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLAtknhkpfsLLPLRQAVRLNPDNGYIKV 221
Cdd:COG3914 81 LELAALLLQALG--RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEA--------LAALRRALALNPDFAEAYL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 222 LLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIgLCYKAQMIQ 301
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL-LFALRQACD 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 116534937 302 IKEATKGQPRGQNREKLDKMIRSAIFHFESAVEkkptfEVAHLDLARMYIEA 353
Cdd:COG3914 230 WEVYDRFEELLAALARGPSELSPFALLYLPDDD-----PAELLALARAWAQL 276
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-367 |
1.57e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 64.75 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 64 LKGQNEEALKSLKEAENLmqeehdNQANVRSLVTWGNfawMYYHMGRLAEAQTYLDKVEnickklsnpfryrmecpEIDC 143
Cdd:COG2956 20 LNGQPDKAIDLLEEALEL------DPETVEAHLALGN---LYRRRGEYDRAIRIHQKLL-----------------ERDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 144 EEGWALLKCGG-----KNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGY 218
Cdd:COG2956 74 DRAEALLELAQdylkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV--------LERLLKLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 219 IKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQ 298
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116534937 299 miqikeatkgqprGQNREkldkmirsAIFHFESAVEKKPTfEVAHLDLARMYIEAGNHRKAEENFQKLL 367
Cdd:COG2956 226 -------------GDPEE--------ALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
256-470 |
2.80e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 2.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 256 YAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYkaqmiqikeatkgqprgQNREKLDKmirsAIFHFESAVEK 335
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLY-----------------RRRGEYDR----AIRIHQKLLER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 336 KPTFEVAHLDLARMYIEAGNHRKAEENFQKLLcmkpvvEETMQDIHFHYGRFQEFQKKSDvnaiihYLKAIKieqasltr 415
Cdd:COG2956 72 DPDRAEALLELAQDYLKAGLLDRAEELLEKLL------ELDPDDAEALRLLAEIYEQEGD------WEKAIE-------- 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116534937 416 dksinslkklVLRKLRRKALDLESLSL-LGFVYKLEGNMNEALEYYERALRLAADF 470
Cdd:COG2956 132 ----------VLERLLKLGPENAHAYCeLAELYLEQGDYDEAIEALEKALKLDPDC 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
55-245 |
3.40e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.49 E-value: 3.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 55 HNLLAYVKHLKGQNEEALKSLKEAENLMQEEHDnqanvrslvTWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRY 134
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE---------ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 135 RmecpeidceeGWALLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNP 214
Cdd:COG0457 82 L----------GLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEA--------YERALELDP 141
|
170 180 190
....*....|....*....|....*....|.
gi 116534937 215 DNGYIKVLLALKLQDEGQEAEGEKYIEEALA 245
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
223-371 |
6.33e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 6.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 223 LALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqi 302
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA---- 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116534937 303 keatkgqprgqnrekldKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKP 371
Cdd:COG4783 86 -----------------GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
67-470 |
1.85e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.18 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 67 QNEEALKSLKEAENLmQEEHDNQANVRSLVtwgnfAWMYYHMGRLAEAQTYLDKVENIckklsNP--FRYRMECPEIDCE 144
Cdd:TIGR02917 443 RSGQFDKALAAAKKL-EKKQPDNASLHNLL-----GAIYLGKGDLAKAREAFEKALSI-----EPdfFPAAANLARIDIQ 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 145 EGwallkcggkNYERAKACFEKVLEVDPENPESSAGYAisayrldGFKLATkNHKPFSLLPLRQAVRLNPDNGYIKVLLA 224
Cdd:TIGR02917 512 EG---------NPDDAIQRFEKVLTIDPKNLRAILALA-------GLYLRT-GNEEEAVAWLEKAAELNPQEIEPALALA 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 225 LKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHhqiglcykaqmiqiKE 304
Cdd:TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL--------------LL 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 305 ATKGQPRGQNREKldkmirsAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKP---VVEETMQDIH 381
Cdd:TIGR02917 641 LADAYAVMKNYAK-------AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPkaaLGFELEGDLY 713
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 382 FHYGRFQEfqkksdvnAIIHYLKAIKIEQASLT---------RDKSINSLKKLVLRKLRRKALDLESLSLLGFVYKLEGN 452
Cdd:TIGR02917 714 LRQKDYPA--------AIQAYRKALKRAPSSQNaiklhrallASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785
|
410
....*....|....*...
gi 116534937 453 MNEALEYYERALRLAADF 470
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDN 803
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
269-471 |
2.14e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 2.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 269 KALELLKKALQETPTSVLLHHQIGLCYKAQMIQIKEATKGQPRGQNREKLDKmIRSAIFHFESAVEKKPTFEVAHLDLAR 348
Cdd:COG3914 42 GLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGR-YEEALALYRRALALNPDNAEALFNLGN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 349 MYIEAGNHRKAEENFQKLLCMKPvveeTMQDIHFHYGRFQEFQKKSDvNAIIHYLKAikieqasltrdksinslkklvlr 428
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNP----DFAEAYLNLGEALRRLGRLE-EAIAALRRA----------------------- 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 116534937 429 kLRRKALDLESLSLLGFVYKLEGNMNEALEYYERALRLAADFE 471
Cdd:COG3914 173 -LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
147-371 |
2.33e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.70 E-value: 2.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 147 WALLKCGGKNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLN-PDNGYIKVLLAL 225
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAlLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 226 KLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQMiQIKEA 305
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG-RLEEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116534937 306 TKgqprgqnrekldkmirsaifHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKP 371
Cdd:COG3914 166 IA--------------------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
159-284 |
7.79e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.94 E-value: 7.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 159 RAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEK 238
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAA--------YEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 116534937 239 YIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTS 284
Cdd:COG4235 73 LLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
261-476 |
8.52e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.25 E-value: 8.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 261 YRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprGQNREkldkmirsAIFHFESAVEKKPTFE 340
Cdd:COG0457 18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-------------GRYEE--------ALADYEQALELDPDDA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 341 VAHLDLARMYIEAGNHRKAEENFQKLLCMKPVVEEtmqdIHFHYGRFQEFQKKSDvNAIIHYLKAIKIEQAsltrdksin 420
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE----ALYNLGLALLELGRYD-EAIEAYERALELDPD--------- 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 116534937 421 slkklvlrklrrkalDLESLSLLGFVYKLEGNMNEALEYYERALRLAADFENSVRQ 476
Cdd:COG0457 143 ---------------DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
206-298 |
2.58e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 2.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 206 LRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSV 285
Cdd:COG4783 27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP 106
|
90
....*....|...
gi 116534937 286 LLHHQIGLCYKAQ 298
Cdd:COG4783 107 EAYLRLARAYRAL 119
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
146-245 |
2.63e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 2.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 146 GWALLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGYIKVLLAL 225
Cdd:COG4235 24 GRAYLRLG--RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL--------LERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|
gi 116534937 226 KLQDEGQEAEGEKYIEEALA 245
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLA 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
155-246 |
2.18e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 155 KNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLAtknhkpfslLPLRQAVRLNPDNGYIKVLLALKLQDEGQEA 234
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA---------IALEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|..
gi 116534937 235 EGEKYIEEALAN 246
Cdd:COG3063 77 EALAYLERALEL 88
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
325-467 |
3.16e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 3.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 325 AIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPvveeTMQDIHFHYGRFQEFQKKSDvnaiihylK 404
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP----DNADALLDLAEALLAAGDTE--------E 69
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116534937 405 AIKIEQASLTRDKSinslkklvlrklrrkalDLESLSLLGFVYKLEGNMNEALEYYERALRLA 467
Cdd:COG4235 70 AEELLERALALDPD-----------------NPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
146-470 |
4.32e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.86 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 146 GWALLKCGGKNYERAKACFEKVLEVDPENpessagyaISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDNGYIKVLLAL 225
Cdd:TIGR02917 164 GLAQLALAENRFDEARALIDEVLTADPGN--------VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 226 KLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETP---TSVLL----HHQIGLCYKAQ 298
Cdd:TIGR02917 236 ILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPeylPALLLagasEYQLGNLEQAY 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 299 ---------------------MIQIKE--ATKGQPRGQNREKLD-----------------KMIRSAIFHFESAVEKKPT 338
Cdd:TIGR02917 316 qylnqilkyapnshqarrllaSIQLRLgrVDEAIATLSPALGLDpddpaalsllgeaylalGDFEKAAEYLAKATELDPE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 339 FEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPVVeetmqdihfhygrfqefqKKSDVNAIIHYLKAIKIeqasltrDKS 418
Cdd:TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL------------------GRADLLLILSYLRSGQF-------DKA 450
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 116534937 419 INSLKKLvLRKLRRKALdleSLSLLGFVYKLEGNMNEALEYYERALRLAADF 470
Cdd:TIGR02917 451 LAAAKKL-EKKQPDNAS---LHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
51-408 |
5.18e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 5.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 51 SVGIHNLLAYVKHLKGQNEEALKSLKEAenlMQEEHDNQANVRSLVTWgnfawmYYHMGRLAEAQTYLDKVENICKKlsn 130
Cdd:TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKA---AELNPQEIEPALALAQY------YLGKGQLKKALAILNEAADAAPD--- 599
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 131 pfryrmeCPEIDCEEGWALLKcgGKNYERAKACFEKVLEVDPENPEssagyaisAYRLDGFKLATKNHKPFSLLPLRQAV 210
Cdd:TIGR02917 600 -------SPEAWLMLGRAQLA--AGDLNKAVSSFKKLLALQPDSAL--------ALLLLADAYAVMKNYAKAITSLKRAL 662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 211 RLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTS---VLL 287
Cdd:TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSqnaIKL 742
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 288 HHQIGLCYKAQmiqikEATKGQPRGQNREKLDKMIRS--------------AIFHFESAVEKKPTFEVAHLDLARMYIEA 353
Cdd:TIGR02917 743 HRALLASGNTA-----EAVKTLEAWLKTHPNDAVLRTalaelylaqkdydkAIKHYQTVVKKAPDNAVVLNNLAWLYLEL 817
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 116534937 354 GNHRkAEENFQKLLCMKP---VVEETMQDIHFHYGRFQEfqkksdvnAIIHYLKAIKI 408
Cdd:TIGR02917 818 KDPR-ALEYAERALKLAPnipAILDTLGWLLVEKGEADR--------ALPLLRKAVNI 866
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
58-216 |
8.28e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 8.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 58 LAYVKHLKGQNEEALKSLKEAenLMQEEHDNQAnvrslvtWGNFAWMYYHMGRLAEAQTYLDKVENIckklsNPfryrmE 137
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKA--LELDPDNPEA-------FALLGEILLQLGDLDEAIVLLHEALEL-----DP-----D 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116534937 138 CPEIDCEEGWALLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDN 216
Cdd:COG4783 71 EPEARLNLGLALLKAG--DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA--------LEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
50-280 |
4.07e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.27 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 50 YSVGIHNLLAYVKHLKGQNEEALKSLKEAENLMQEEhdnqanvrslvtwgnfAWMYYHMGRLAEAQtyldkvenickkls 129
Cdd:COG2956 108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN----------------AHAYCELAELYLEQ-------------- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 130 npfryrmecpeidceegwallkcggKNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQA 209
Cdd:COG2956 158 -------------------------GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAA--------LERA 204
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116534937 210 VRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYaAKFYRRKGSVDKALELLKKALQE 280
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRR 274
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
203-372 |
4.82e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 4.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 203 LLPLRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETP 282
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 283 TSVLLHHQIGLCYKAQmiqikeatkgqprGQNREkldkmirsAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEEN 362
Cdd:COG5010 86 NNPELYYNLALLYSRS-------------GDKDE--------AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144
|
170
....*....|
gi 116534937 363 FQKLLCMKPV 372
Cdd:COG5010 145 LQRALGTSPL 154
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
155-246 |
5.20e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 5.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 155 KNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGYIKVLLALKLQDEGQEA 234
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEY--------YEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|..
gi 116534937 235 EGEKYIEEALAN 246
Cdd:COG5010 140 EAKAALQRALGT 151
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
248-409 |
6.19e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.65 E-value: 6.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 248 SSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYkaqmiqikeatkgqprgQNREKLDKmirsAIF 327
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIL-----------------LQLGDLDE----AIV 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 328 HFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPvveeTMQDIHFHYGRFQEFQKKSDvNAIIHYLKAIK 407
Cdd:COG4783 60 LLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP----EHPEAYLRLARAYRALGRPD-EAIAALEKALE 134
|
..
gi 116534937 408 IE 409
Cdd:COG4783 135 LD 136
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
261-371 |
8.06e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 8.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 261 YRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprgqnrEKLDKMIRsaifhFESAVEKKPTFE 340
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-----------------GRYDEAIA-----LEKALKLDPNNA 59
|
90 100 110
....*....|....*....|....*....|.
gi 116534937 341 VAHLDLARMYIEAGNHRKAEENFQKLLCMKP 371
Cdd:COG3063 60 EALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
50-367 |
3.31e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 50 YSVGIHNLLAYVKHLKGQNEEALKSLKEAenLMQEEHDNQANVRslvtwgnfawmyyhMGRLAEAQTYLDKVENICKKLS 129
Cdd:TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRA--LELKPDNTEAQIG--------------LAQLLLAAKRTESAKKIAKSLQ 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 130 NPfryRMECPEIDCEEGWALLKcgGKNYERAKACFEKVLEVDPenpesSAGYAIsayRLDGFKLATKNhKPFSLLPLRQA 209
Cdd:TIGR02917 697 KQ---HPKAALGFELEGDLYLR--QKDYPAAIQAYRKALKRAP-----SSQNAI---KLHRALLASGN-TAEAVKTLEAW 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 210 VRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRrKGSVDKALELLKKALQETPTSvllhH 289
Cdd:TIGR02917 763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNI----P 837
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116534937 290 QIGLCYKAQMIQIKEAtkgqprgqnrekldkmiRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLL 367
Cdd:TIGR02917 838 AILDTLGWLLVEKGEA-----------------DRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
333-470 |
3.75e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 3.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 333 VEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPVVEETMQ---DIHFHYGRFQEfqkksdvnAIIHYLKAIKIE 409
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYnlgLAYLRLGRYEE--------ALADYEQALELD 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116534937 410 QAsltrdksinslkklvlrklrrkalDLESLSLLGFVYKLEGNMNEALEYYERALRLAADF 470
Cdd:COG0457 73 PD------------------------DAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
67-279 |
5.03e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.60 E-value: 5.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 67 QNEEALKSLKEAENLMQEEHDN-QANVRSLVTWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRYRmecpeidcee 145
Cdd:COG4785 44 LALALAAAALAAAALAAERIDRaLALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNR---------- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 146 GWALLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNhkpfsllpLRQAVRLNPDNGYIKVLLAL 225
Cdd:COG4785 114 GLAYLLLG--DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIAD--------LEKALELDPNDPERALWLYL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 116534937 226 klqdegqeAEGEKYIEEALANMSSQTyvfryaAKFYRRKGSVDKALELLKKALQ 279
Cdd:COG4785 184 --------AERKLDPEKALALLLEDW------ATAYLLQGDTEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
206-325 |
5.31e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 206 LRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSV 285
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 116534937 286 LLHHQIGLCYKAQ------MIQIKEATKGQPRGQNREKLDKMIRSA 325
Cdd:COG4235 86 EALYLLGLAAFQQgdyaeaIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
206-282 |
6.57e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 6.57e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116534937 206 LRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYiEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETP 282
Cdd:COG3063 15 YEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
54-127 |
6.86e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 6.86e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116534937 54 IHNLLAYVKHLKGQNEEALKSLKEAENLMQEEHDNQaNVRSLVTWGNFAWMYYHMGRLAEAQTYLDKVENICKK 127
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPD-HPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
269-412 |
1.35e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 269 KALELLKKALQETPTSVLLHHQIGLCYKAQmiqikeatkgqprGQNREkldkmirsAIFHFESAVEKKPTFEVAHLDLAR 348
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRL-------------GRYDE--------ALAAYEKALRLDPDNADALLDLAE 59
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116534937 349 MYIEAGNHRKAEENFQKLLCMKPvveeTMQDIHFHYGRFQEFQKKSDvNAIIHYLKAIKIEQAS 412
Cdd:COG4235 60 ALLAAGDTEEAEELLERALALDP----DNPEALYLLGLAAFQQGDYA-EAIAAWQKLLALLPAD 118
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
67-306 |
1.46e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 47.67 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 67 QNEEALKSL--KEAENLMQEE-HDNQANVRSLVTWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRYRMECPeidc 143
Cdd:TIGR00990 230 QSAQAVERLlkKFAESKAKEIlETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESK---- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 144 eegwallkcGGKNYERAKACFEKVLEVDPENPessagYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNP--DNGYIKv 221
Cdd:TIGR00990 306 ---------ADESYEEAARAFEKALDLGKLGE-----KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPrvTQSYIK- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 222 lLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIG-LCYKAQMI 300
Cdd:TIGR00990 371 -RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGvTQYKEGSI 449
|
....*.
gi 116534937 301 QIKEAT 306
Cdd:TIGR00990 450 ASSMAT 455
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
323-470 |
4.00e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.64 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 323 RSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPvvEETmqDIHFHYGRFQEFQKKSDvNAIIHY 402
Cdd:COG4783 21 DEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP--DEP--EARLNLGLALLKAGDYD-EALALL 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116534937 403 LKAIKIEQAsltrdksinslkklvlrklrrkalDLESLSLLGFVYKLEGNMNEALEYYERALRLAADF 470
Cdd:COG4783 96 EKALKLDPE------------------------HPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
232-465 |
5.26e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.52 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 232 QEAEGEKYIEEALANMSSQTYVFRYAAkfYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYkaqmiqikeatkgqpr 311
Cdd:COG4785 56 AALAAERIDRALALPDLAQLYYERGVA--YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAY---------------- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 312 gQNREKLDKmirsAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKllcmkpvveetmqdihfhygrFQEFQ 391
Cdd:COG4785 118 -LLLGDYDA----ALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK---------------------ALELD 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116534937 392 KKSDVNAIIHYlkaikieqasltrdksinslkkLVLRKLRRKALDLESLSLLGFVYKLEGNMNEALEYYERALR 465
Cdd:COG4785 172 PNDPERALWLY----------------------LAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
164-467 |
8.24e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.07 E-value: 8.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 164 FEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEA 243
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 244 LANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHhqiglcYKAQMIQIKEatkgqprgQNREKLDKmir 323
Cdd:TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL------LALATILIEA--------GEFEEAEK--- 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 324 saifHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPVVEETMQ---DIHFHYGRFQefQKKSDVNAII 400
Cdd:TIGR02917 249 ----HADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLlagASEYQLGNLE--QAYQYLNQIL 322
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116534937 401 HYL----KAIKIEQASLTRDKSINSLKKLVLRKLRRKALDLESLSLLGFVYKLEGNMNEALEYYERALRLA 467
Cdd:TIGR02917 323 KYApnshQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
51-174 |
6.86e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.79 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 51 SVGIHNLLAYVKHLKGQNEEALKSLKEAENLMQEEHDnqanvrslvTWGNFAWMYYHMGRLAEAQTYLDKVenickklsn 130
Cdd:COG4783 37 NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE---------ARLNLGLALLKAGDYDEALALLEKA--------- 98
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 116534937 131 pFRYRMECPEIDCEEGWALLKCGgkNYERAKACFEKVLEVDPEN 174
Cdd:COG4783 99 -LKLDPEHPEAYLRLARAYRALG--RPDEAIAALEKALELDPDD 139
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
438-470 |
1.08e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.08e-03
10 20 30
....*....|....*....|....*....|...
gi 116534937 438 ESLSLLGFVYKLEGNMNEALEYYERALRLAADF 470
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
342-470 |
1.50e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.02 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 342 AHLDLARMYIEAGNHRKAEENFQKLLCMKPVVEETMQ---DIHFHYGRFQEfqkksdvnAIIHYLKAIKIEQAsltrdks 418
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFAllgEILLQLGDLDE--------AIVLLHEALELDPD------- 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 116534937 419 inslkklvlrklrrkalDLESLSLLGFVYKLEGNMNEALEYYERALRLAADF 470
Cdd:COG4783 71 -----------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEH 105
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
350-469 |
1.51e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 350 YIEAGNHRKAEENFQKLLCMKPvveeTMQDIHFHYGRFQEFQKKSDvnaiihylKAIKIEQAsltrdksinslkklvlrk 429
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDP----DNADALNNLGLLLLEQGRYD--------EAIALEKA------------------ 51
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 116534937 430 LRRKALDLESLSLLGFVYKLEGNMNEALEYYERALRLAAD 469
Cdd:COG3063 52 LKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
438-470 |
1.58e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 1.58e-03
10 20 30
....*....|....*....|....*....|...
gi 116534937 438 ESLSLLGFVYKLEGNMNEALEYYERALRLAADF 470
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
54-242 |
1.95e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 54 IHNLLAYVKHLKGQNEEALKSLKEAENLMQEEHDnqanvrslvTWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFR 133
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAE---------ALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 134 YRmecpeidceeGWALLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLN 213
Cdd:COG0457 149 NL----------GIALEKLG--RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
170 180
....*....|....*....|....*....
gi 116534937 214 PDNGYIKVLLALKLQDEGQEAEGEKYIEE 242
Cdd:COG0457 217 AALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
69-194 |
2.46e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 69 EEALKSLKEAENLMQEEHDNQANVRSLVTWGNFAWMYYHMGRLAEAQTYLDKVENIckklsNPfryrmECPEIDCEEGWA 148
Cdd:COG5010 28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-----DP-----NNPELYYNLALL 97
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 116534937 149 LLKCGgkNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLA 194
Cdd:COG5010 98 YSRSG--DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
95-173 |
4.90e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.83 E-value: 4.90e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116534937 95 LVTWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRYRmecpEIDCEEGWALLKCGGKNYERAKACFEKVLEVDPE 173
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPL----TATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
319-361 |
7.88e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 34.87 E-value: 7.88e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 116534937 319 DKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEE 361
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
261-367 |
9.74e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 9.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116534937 261 YRRKGSVDKALELLKKALQETPTSVLL---HHQIGLCYKAQmiqikeatkgqprgqnrekldKMIRSAIFHFESAVEKKP 337
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYAL---------------------GDYDEAAEAFEKLLKRYP 61
|
90 100 110
....*....|....*....|....*....|...
gi 116534937 338 TFEV---AHLDLARMYIEAGNHRKAEENFQKLL 367
Cdd:COG1729 62 DSPKapdALLKLGLSYLELGDYDKARATLEELI 94
|
|
| |
