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Conserved domains on  [gi|2778098841|ref|NP_001419024|]
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tetratricopeptide repeat protein 6 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1699-1867 1.06e-34

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 133.98  E-value: 1.06e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNS 1778
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1779 VLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDY 1858
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167


                   ....*....
gi 2778098841 1859 NQALDLEEY 1867
Cdd:COG0457    168 EKLEAAALA 176
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 898-1776 1.02e-31

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 135.21  E-value: 1.02e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  898 KKNPAFAYCR--RGAIYRKLGKLQSAMNDLQ-------ETIFVEPLFLnaywhrhFIYLFQDKINDALDDLnfiTKY--- 965
Cdd:TIGR02917   50 QKDPNDAEARflLGKIYLALGDYAAAEKELRkalslgyPKNQVLPLLA-------RAYLLQGKFQQVLDEL---PGKtll 119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  966 -NKNHAE--AYLSKAEIFREKNDitLAILNYSQAIKCRPKdaSLYFKRGEMYEK-TNKVL--AIDDFSKCIYYDPKRSDA 1039
Cdd:TIGR02917  120 dDEGAAEllALRGLAYLGLGQLE--LAQKSYEQALAIDPR--SLYAKLGLAQLAlAENRFdeARALIDEVLTADPGNVDA 195

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1040 LWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACL-FRKC 1118
Cdd:TIGR02917  196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKK 275

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1119 SPQRALQDYSVSVLINDGYdnLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWF 1198
Cdd:TIGR02917  276 NYEDARETLQDALKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATL 352

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1199 TEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMM--KSYDLAKLTifQVAEMNKgv 1276
Cdd:TIGR02917  353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQgdPSEAIADLE--TAAQLDP-- 428

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1277 iELSPIQEALIYSFCENH--DKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfSDKGPAATsv 1353
Cdd:TIGR02917  429 -ELGRADLLLILSYLRSGqfDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAA-- 503

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1354 sadclyNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAfyHRGLCKVKL---NKQHSILDFNRALTLNPEHYQAYLSRVA 1430
Cdd:TIGR02917  504 ------NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQ 575

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1431 YYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMAL 1510
Cdd:TIGR02917  576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1511 RDYGIVLLLQAGetialNTLVNRGLIYTELEQygfalEDFKEASMISETSVKLCQATAM-------CHHRIKEFQGAVEF 1583
Cdd:TIGR02917  656 TSLKRALELKPD-----NTEAQIGLAQLLLAA-----KRTESAKKIAKSLQKQHPKAALgfelegdLYLRQKDYPAAIQA 725

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1584 FTRAIKINPryLDAYIGRGNSYMEYEQNKAmiQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANP 1663
Cdd:TIGR02917  726 YRKALKRAP--SSQNAIKLHRALLASGNTA--EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1664 KNYLAYEGRAVVCLQMSNYFAamqdincaikinstaefltnrgvihEFMGQQQNAMADYQAAIsLDpnySLAYfnagnIY 1743
Cdd:TIGR02917  802 DNAVVLNNLAWLYLELKDPRA-------------------------LEYAERALKLAPNIPAI-LD---TLGW-----LL 847

                          890       900       910
                   ....*....|....*....|....*....|...
gi 2778098841 1744 LHHRQFSQATDYFSTALKLNPENECALMNRAVT 1776
Cdd:TIGR02917  848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
 387-663 1.38e-04

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.99  E-value: 1.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  387 PEDSGKPADTVLPTSDAKPTRRPTLDV-EPTGFMQIRGKEVKPTYKSTPAKPTKPRIPVRPEEDKkrIKKVPQPPSLPhl 465
Cdd:PTZ00449   588 PKDPEEPKKPKRPRSAQRPTRPKSPKLpELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK--IIKSPKPPKSP-- 663

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  466 hglctivpamELPVDLRLASRVYHTPDRKGHKAvlgllgSSLLGDHCIDEQRERLLFGVPAMSEMQKYTGVTPASAEgLP 545
Cdd:PTZ00449   664 ----------KPPFDPKFKEKFYDDYLDAAAKS------KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPK-LP 726

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  546 GSEQ-TNQREANKANLQLSGEEVSAYPGTSKMFWNLTAPKFAIP---------ESTMRETLYPK---------------- 599
Cdd:PTZ00449   727 RDEEfPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPdilaeefkeEDIHAETGEPDeamkrpdspsehedkp 806

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778098841  600 ---YESVQTSRLLTEKLSESQSEiiLESYTKR-----SFKNLIIKKSASCEDIQKYSSVPYTRLKRSKSTVE 663
Cdd:PTZ00449   807 pgdHPSLPKKRHRLDGLALSTTD--LESDAGRiakdaSGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVD 876
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1699-1867 1.06e-34

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 133.98  E-value: 1.06e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNS 1778
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1779 VLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDY 1858
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167


                   ....*....
gi 2778098841 1859 NQALDLEEY 1867
Cdd:COG0457    168 EKLEAAALA 176
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 898-1776 1.02e-31

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 135.21  E-value: 1.02e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  898 KKNPAFAYCR--RGAIYRKLGKLQSAMNDLQ-------ETIFVEPLFLnaywhrhFIYLFQDKINDALDDLnfiTKY--- 965
Cdd:TIGR02917   50 QKDPNDAEARflLGKIYLALGDYAAAEKELRkalslgyPKNQVLPLLA-------RAYLLQGKFQQVLDEL---PGKtll 119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  966 -NKNHAE--AYLSKAEIFREKNDitLAILNYSQAIKCRPKdaSLYFKRGEMYEK-TNKVL--AIDDFSKCIYYDPKRSDA 1039
Cdd:TIGR02917  120 dDEGAAEllALRGLAYLGLGQLE--LAQKSYEQALAIDPR--SLYAKLGLAQLAlAENRFdeARALIDEVLTADPGNVDA 195

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1040 LWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACL-FRKC 1118
Cdd:TIGR02917  196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKK 275

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1119 SPQRALQDYSVSVLINDGYdnLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWF 1198
Cdd:TIGR02917  276 NYEDARETLQDALKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATL 352

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1199 TEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMM--KSYDLAKLTifQVAEMNKgv 1276
Cdd:TIGR02917  353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQgdPSEAIADLE--TAAQLDP-- 428

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1277 iELSPIQEALIYSFCENH--DKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfSDKGPAATsv 1353
Cdd:TIGR02917  429 -ELGRADLLLILSYLRSGqfDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAA-- 503

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1354 sadclyNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAfyHRGLCKVKL---NKQHSILDFNRALTLNPEHYQAYLSRVA 1430
Cdd:TIGR02917  504 ------NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQ 575

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1431 YYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMAL 1510
Cdd:TIGR02917  576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1511 RDYGIVLLLQAGetialNTLVNRGLIYTELEQygfalEDFKEASMISETSVKLCQATAM-------CHHRIKEFQGAVEF 1583
Cdd:TIGR02917  656 TSLKRALELKPD-----NTEAQIGLAQLLLAA-----KRTESAKKIAKSLQKQHPKAALgfelegdLYLRQKDYPAAIQA 725

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1584 FTRAIKINPryLDAYIGRGNSYMEYEQNKAmiQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANP 1663
Cdd:TIGR02917  726 YRKALKRAP--SSQNAIKLHRALLASGNTA--EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1664 KNYLAYEGRAVVCLQMSNYFAamqdincaikinstaefltnrgvihEFMGQQQNAMADYQAAIsLDpnySLAYfnagnIY 1743
Cdd:TIGR02917  802 DNAVVLNNLAWLYLELKDPRA-------------------------LEYAERALKLAPNIPAI-LD---TLGW-----LL 847

                          890       900       910
                   ....*....|....*....|....*....|...
gi 2778098841 1744 LHHRQFSQATDYFSTALKLNPENECALMNRAVT 1776
Cdd:TIGR02917  848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1355-1553 2.16e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.87  E-value: 2.16e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYG 1433
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1434 LKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDY 1513
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 2778098841 1514 GIVLLLQAGETIALNTLVNRGLIYTELEQYGFALEDFKEA 1553
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1541-1871 1.11e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 79.64  E-value: 1.11e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1541 EQYGFALEDFKEASMISETSVKLCQATAmCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSY--------------- 1605
Cdd:TIGR00990  141 KDFNKAIKLYSKAIECKPDPVYYSNRAA-CHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYdglgkyadalldlta 219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1606 ------MEYEQNKAMI------QAQKDFLRALHLDPSNLKARISLGYNLQA-QGKFQKAWQHFTIGIEANPKNYLAYEG- 1671
Cdd:TIGR00990  220 sciidgFRNEQSAQAVerllkkFAESKAKEILETKPENLPSVTFVGNYLQSfRPKPRPAGLEDSNELDEETGNGQLQLGl 299

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1672 RAVVCLQMSNYFAAMQDINCAIKINSTAEFLT----NRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHR 1747
Cdd:TIGR00990  300 KSPESKADESYEEAARAFEKALDLGKLGEKEAialnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG 379

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1748 QFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRA 1827
Cdd:TIGR00990  380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 2778098841 1828 LSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLEEYSKAM 1871
Cdd:TIGR00990  460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 1699-1834 1.32e-06

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 52.20  E-value: 1.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVtns 1778
Cdd:PRK11189    64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI--- 140

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1779 vlkkyeeaekdfshamelcphwaALYfnrasfyvYLKKYELAEEDLDRALSLKPDD 1834
Cdd:PRK11189   141 -----------------------ALY--------YGGRYELAQDDLLAFYQDDPND 165
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1355-1388 3.65e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 45.13  E-value: 3.65e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2778098841  1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDF 1388
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1546-1656 3.76e-06

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 49.68  E-value: 3.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1546 ALEDFKEASMISETSVKLCQATAMCHHR-------IKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAq 1618
Cdd:NF040959    83 KTGQYDRAIKVLEKVLSLAPDHVKAAYRkgvallkIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEA- 161

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2778098841 1619 kdFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFT 1656
Cdd:NF040959   162 --FQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFK 197
TPR_1 pfam00515
Tetratricopeptide repeat;
1355-1388 6.50e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 6.50e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2778098841 1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDF 1388
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 1004-1108 2.52e-05

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 48.35  E-value: 2.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1004 ASLYFKRGEMYEKTN-KVLAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYF 1082
Cdd:PRK11189    64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2778098841 1083 KRNLFKQATEDFSAAIHSDPNN-----WLAL 1108
Cdd:PRK11189   144 YGGRYELAQDDLLAFYQDDPNDpyralWLYL 174
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 387-663 1.38e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.99  E-value: 1.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  387 PEDSGKPADTVLPTSDAKPTRRPTLDV-EPTGFMQIRGKEVKPTYKSTPAKPTKPRIPVRPEEDKkrIKKVPQPPSLPhl 465
Cdd:PTZ00449   588 PKDPEEPKKPKRPRSAQRPTRPKSPKLpELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK--IIKSPKPPKSP-- 663

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  466 hglctivpamELPVDLRLASRVYHTPDRKGHKAvlgllgSSLLGDHCIDEQRERLLFGVPAMSEMQKYTGVTPASAEgLP 545
Cdd:PTZ00449   664 ----------KPPFDPKFKEKFYDDYLDAAAKS------KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPK-LP 726

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  546 GSEQ-TNQREANKANLQLSGEEVSAYPGTSKMFWNLTAPKFAIP---------ESTMRETLYPK---------------- 599
Cdd:PTZ00449   727 RDEEfPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPdilaeefkeEDIHAETGEPDeamkrpdspsehedkp 806

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778098841  600 ---YESVQTSRLLTEKLSESQSEiiLESYTKR-----SFKNLIIKKSASCEDIQKYSSVPYTRLKRSKSTVE 663
Cdd:PTZ00449   807 pgdHPSLPKKRHRLDGLALSTTD--LESDAGRiakdaSGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVD 876
TPR_1 pfam00515
Tetratricopeptide repeat;
1801-1834 2.73e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 2.73e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2778098841 1801 AALYFNRASFYVYLKKYELAEEDLDRALSLKPDD 1834
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1735-1766 3.79e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 3.79e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2778098841  1735 AYFNAGNIYLHHRQFSQATDYFSTALKLNPEN 1766
Cdd:smart00028    3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1712-1768 4.45e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.46  E-value: 4.45e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2778098841 1712 MGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENEC 1768
Cdd:cd24142     13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGY 69
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1315-1387 7.67e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.69  E-value: 7.67e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841 1315 ALLAKAQMK--AKRIKESVRLFKKALELYtfsdkgpaATSVSAdcLYNLGLCYMEEGNFQMAYESFTKAVRANPD 1387
Cdd:cd24142      2 ELLEKAEELldQGNFELALKFLQRALELE--------PNNVEA--LELLGEILLELGDVEEAREVLLRAIELDPD 66
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1699-1867 1.06e-34

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 133.98  E-value: 1.06e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNS 1778
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1779 VLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDY 1858
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167


                   ....*....
gi 2778098841 1859 NQALDLEEY 1867
Cdd:COG0457    168 EKLEAAALA 176
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1659-1867 3.65e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 126.66  E-value: 3.65e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1659 IEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYF 1737
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1738 NAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKY 1817
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1818 ELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLEEY 1867
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 898-1776 1.02e-31

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 135.21  E-value: 1.02e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  898 KKNPAFAYCR--RGAIYRKLGKLQSAMNDLQ-------ETIFVEPLFLnaywhrhFIYLFQDKINDALDDLnfiTKY--- 965
Cdd:TIGR02917   50 QKDPNDAEARflLGKIYLALGDYAAAEKELRkalslgyPKNQVLPLLA-------RAYLLQGKFQQVLDEL---PGKtll 119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  966 -NKNHAE--AYLSKAEIFREKNDitLAILNYSQAIKCRPKdaSLYFKRGEMYEK-TNKVL--AIDDFSKCIYYDPKRSDA 1039
Cdd:TIGR02917  120 dDEGAAEllALRGLAYLGLGQLE--LAQKSYEQALAIDPR--SLYAKLGLAQLAlAENRFdeARALIDEVLTADPGNVDA 195

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1040 LWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACL-FRKC 1118
Cdd:TIGR02917  196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKK 275

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1119 SPQRALQDYSVSVLINDGYdnLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWF 1198
Cdd:TIGR02917  276 NYEDARETLQDALKSAPEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATL 352

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1199 TEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMM--KSYDLAKLTifQVAEMNKgv 1276
Cdd:TIGR02917  353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQgdPSEAIADLE--TAAQLDP-- 428

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1277 iELSPIQEALIYSFCENH--DKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfSDKGPAATsv 1353
Cdd:TIGR02917  429 -ELGRADLLLILSYLRSGqfDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAA-- 503

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1354 sadclyNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAfyHRGLCKVKL---NKQHSILDFNRALTLNPEHYQAYLSRVA 1430
Cdd:TIGR02917  504 ------NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQ 575

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1431 YYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMAL 1510
Cdd:TIGR02917  576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1511 RDYGIVLLLQAGetialNTLVNRGLIYTELEQygfalEDFKEASMISETSVKLCQATAM-------CHHRIKEFQGAVEF 1583
Cdd:TIGR02917  656 TSLKRALELKPD-----NTEAQIGLAQLLLAA-----KRTESAKKIAKSLQKQHPKAALgfelegdLYLRQKDYPAAIQA 725

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1584 FTRAIKINPryLDAYIGRGNSYMEYEQNKAmiQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANP 1663
Cdd:TIGR02917  726 YRKALKRAP--SSQNAIKLHRALLASGNTA--EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1664 KNYLAYEGRAVVCLQMSNYFAamqdincaikinstaefltnrgvihEFMGQQQNAMADYQAAIsLDpnySLAYfnagnIY 1743
Cdd:TIGR02917  802 DNAVVLNNLAWLYLELKDPRA-------------------------LEYAERALKLAPNIPAI-LD---TLGW-----LL 847

                          890       900       910
                   ....*....|....*....|....*....|...
gi 2778098841 1744 LHHRQFSQATDYFSTALKLNPENECALMNRAVT 1776
Cdd:TIGR02917  848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1625-1870 1.10e-30

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 122.42  E-value: 1.10e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1625 LHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLT 1703
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDpDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1704 NRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKY 1783
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1784 EEAEKDFSHAmeLCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALD 1863
Cdd:COG0457    161 EEALELLEKL--EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238


                   ....*..
gi 2778098841 1864 LEEYSKA 1870
Cdd:COG0457    239 ALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1355-1553 2.16e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.87  E-value: 2.16e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYG 1433
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1434 LKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDY 1513
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 2778098841 1514 GIVLLLQAGETIALNTLVNRGLIYTELEQYGFALEDFKEA 1553
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1598-1862 1.91e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 114.06  E-value: 1.91e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1598 YIGRGNSYMEYEQNKamiQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCL 1677
Cdd:COG2956     11 WYFKGLNYLLNGQPD---KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1678 QMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYF 1756
Cdd:COG2956     88 KAGLLDRAEELLEKLLELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1757 STALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAI 1836
Cdd:COG2956    168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                          250       260
                   ....*....|....*....|....*.
gi 2778098841 1837 MYNLrAQVRGKIGLIEEAMCDYNQAL 1862
Cdd:COG2956    248 LLAL-ADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1382-1553 5.86e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 108.56  E-value: 5.86e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1382 VRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYI 1460
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRyEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1461 CRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALNtlvNRGLIYTEL 1540
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---NLGIALEKL 157

                          170
                   ....*....|...
gi 2778098841 1541 EQYGFALEDFKEA 1553
Cdd:COG0457    158 GRYEEALELLEKL 170
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1568-1744 6.14e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 105.86  E-value: 6.14e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1568 AMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKamiQAQKDFLRALHLDPSNLKARISLGYNLQAQGK 1647
Cdd:COG0457     15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNLGLALQALGR 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1648 FQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQNAMADYQAAI 1726
Cdd:COG0457     92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRYEEALELLEKLE 171

                          170
                   ....*....|....*...
gi 2778098841 1727 SLDPNYSLAYFNAGNIYL 1744
Cdd:COG0457    172 AAALAALLAAALGEAALA 189
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1282-1553 1.76e-24

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 105.20  E-value: 1.76e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1282 IQEALIYSFCENHDKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpaaTSVSADCLYN 1360
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPEtVEAHLALGNLYRRRGEYDRAIRIHQKLLER----------DPDRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1361 LGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYS 1439
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1440 KAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLL 1519
Cdd:COG2956    162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241

                          250       260       270
                   ....*....|....*....|....*....|....
gi 2778098841 1520 QAGETIALntlvNRGLIYTELEQYGFALEDFKEA 1553
Cdd:COG2956    242 DPSDDLLL----ALADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1449-1685 6.94e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 102.78  E-value: 6.94e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1449 IRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALN 1528
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1529 tlvNRGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEY 1608
Cdd:COG0457     81 ---NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2778098841 1609 EQ-NKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAA 1685
Cdd:COG0457    158 GRyEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1038-1840 8.84e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 109.79  E-value: 8.84e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1038 DALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIH--SDPNNWLALYYRACLF 1115
Cdd:TIGR02917   23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSlgYPKNQVLPLLARAYLL 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1116 RKcSPQRALqDYSVSVLINDGYDNLNCFLHRGILYTELKFWMLAVCDFETvvTLERTATLAYINIGLIYLQHLDN-YTEA 1194
Cdd:TIGR02917  103 QG-KFQQVL-DELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ--ALAIDPRSLYAKLGLAQLALAENrFDEA 178

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1195 FWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQV----- 1269
Cdd:TIGR02917  179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALlkkap 258

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1270 ----AEMNKGVIE---------LSPIQEAL---------------IYSFCENHDKAIHVLEGVIANKPDiSTYA--LLAK 1319
Cdd:TIGR02917  259 nsplAHYLKALVDfqkknyedaRETLQDALksapeylpalllagaSEYQLGNLEQAYQYLNQILKYAPN-SHQArrLLAS 337

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1320 AQMKAKRIKESVRLFKKALELytfsdkgpaaTSVSADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCK 1399
Cdd:TIGR02917  338 IQLRLGRVDEAIATLSPALGL----------DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1400 VKLNK-QHSILDFNRALTLNPEHYQA----------------------------------YLSRVAYYGLKGRYSKAILN 1444
Cdd:TIGR02917  408 LSQGDpSEAIADLETAAQLDPELGRAdlllilsylrsgqfdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREA 487

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1445 CNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRdygivLLLQAGE- 1523
Cdd:TIGR02917  488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA-----WLEKAAEl 562

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1524 -TIALNTLVNRGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPR-----YLDA 1597
Cdd:TIGR02917  563 nPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDsalalLLLA 642

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1598 YIgrgnsymeYEQNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCL 1677
Cdd:TIGR02917  643 DA--------YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1678 QMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFS 1757
Cdd:TIGR02917  715 RQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1758 TALKLNPENECALMNRA---VTNSVLKKYEEAEKdfshAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDD 1834
Cdd:TIGR02917  795 TVVKKAPDNAVVLNNLAwlyLELKDPRALEYAER----ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870


                   ....*..
gi 2778098841 1835 A-IMYNL 1840
Cdd:TIGR02917  871 AaIRYHL 877
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1415-1653 3.25e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.85  E-value: 3.25e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1415 LTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFY 1494
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1495 NRALCYTKIKKHEMALRDYGIVLLLQAGETIALNtlvNRGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRI 1574
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2778098841 1575 KEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQ 1653
Cdd:COG0457    158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1622-1871 3.69e-23

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 107.00  E-value: 3.69e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1622 LRALHLDPSNLKARISLGYNLQAQGkfQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMsnyfAAMQDINCAIKINSTAEF 1701
Cdd:COG3914      7 LALAALAAAALLAAAAAAELALAAE--LEAAALAAALGLALLLLAALAEAAAAALLAL----AAGEAAAAAAALLLLAAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1702 LTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLK 1781
Cdd:COG3914     81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1782 KYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQA 1861
Cdd:COG3914    161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240

                          250
                   ....*....|
gi 2778098841 1862 LDLEEYSKAM 1871
Cdd:COG3914    241 AALARGPSEL 250
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1632-1842 5.10e-23

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 99.60  E-value: 5.10e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1632 LKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEF 1711
Cdd:COG4785      6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1712 MGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFS 1791
Cdd:COG4785     86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2778098841 1792 HAMELCPHWAALYFNRAsFYVYLKKYELAEEDLDRA------LSLKPDDAIMYNLRA 1842
Cdd:COG4785    166 KALELDPNDPERALWLY-LAERKLDPEKALALLLEDwataylLQGDTEEARELFKLA 221
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1586-1809 2.34e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 104.30  E-value: 2.34e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1586 RAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKN 1665
Cdd:COG3914     32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDN 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1666 YLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYL 1744
Cdd:COG3914    112 AEALFNLGNLLLALGRLEEALAALRRALALNpDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2778098841 1745 HHRQFSQATDYFSTALKLNPENECALMN------RAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRAS 1809
Cdd:COG3914    192 DLGRLEEAIAAYRRALELDPDNADAHSNllfalrQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDD 262
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
964-1127 2.48e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.16  E-value: 2.48e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  964 KYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWK 1042
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1043 RGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCS-PQ 1121
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGrYE 161


                   ....*.
gi 2778098841 1122 RALQDY 1127
Cdd:COG0457    162 EALELL 167
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1285-1454 3.99e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 3.99e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1285 ALIYSFCENHDKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpaaTSVSADCLYNLGL 1363
Cdd:COG0457     15 GLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALEL----------DPDDAEALNNLGL 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1364 CYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAI 1442
Cdd:COG0457     85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRyDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                          170
                   ....*....|..
gi 2778098841 1443 LNCNEAIRLYPE 1454
Cdd:COG0457    165 ELLEKLEAAALA 176
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1184-1870 4.69e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 104.01  E-value: 4.69e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1184 YLQHLDnYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPD--AIHLYIIRGqYLLMMKSYDL 1261
Cdd:TIGR02917   32 YLQKNK-YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPknQVLPLLARA-YLLQGKFQQV 109

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1262 AKLTIFQVAEMNKGVIELSPIQeALIYSFCENHDKAIHVLEGVIANKPDiSTYALLAKAQMKA--KRIKESVRLFKKALE 1339
Cdd:TIGR02917  110 LDELPGKTLLDDEGAAELLALR-GLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALaeNRFDEARALIDEVLT 187

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1340 LY-TFSDkgpaATSVSADCLYNLglcymeeGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTL 1417
Cdd:TIGR02917  188 ADpGNVD----ALLLKGDLLLSL-------GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEfEEAEKHADALLKK 256

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1418 NPEHYQA-YLSRVAYYGlKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNR 1496
Cdd:TIGR02917  257 APNSPLAhYLKALVDFQ-KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL 335

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1497 ALCYTKIKKHEMALRDYGIVLLLQAGETIALNTLvnrGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKE 1576
Cdd:TIGR02917  336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLL---GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1577 FQGAVEFFTRAIKINPRYLDA-------YIGRGN---------SYMEYEQNKAMIQ---------------AQKDFLRAL 1625
Cdd:TIGR02917  413 PSEAIADLETAAQLDPELGRAdlllilsYLRSGQfdkalaaakKLEKKQPDNASLHnllgaiylgkgdlakAREAFEKAL 492

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1626 HLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTA-EFLTN 1704
Cdd:TIGR02917  493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEiEPALA 572

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1705 RGVIHEFMGQQQNAMA---DYQAAISLDPNYSLAYfnaGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLK 1781
Cdd:TIGR02917  573 LAQYYLGKGQLKKALAilnEAADAAPDSPEAWLML---GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK 649

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1782 KYEEAEKDFSHAMELCPHWAALYFNRASFYvylkkyeLAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQA 1861
Cdd:TIGR02917  650 NYAKAITSLKRALELKPDNTEAQIGLAQLL-------LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722


                   ....*....
gi 2778098841 1862 LDleEYSKA 1870
Cdd:TIGR02917  723 IQ--AYRKA 729
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1454-1865 6.88e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 103.62  E-value: 6.88e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1454 ESVRAYICRGVlKYYNRN-YKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALNTLVN 1532
Cdd:TIGR02917   20 QSPEELIEAAK-SYLQKNkYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1533 rglIYTELEQYGFALEDFKEASMIS-ETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQN 1611
Cdd:TIGR02917   99 ---AYLLQGKFQQVLDELPGKTLLDdEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1612 KamiQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINC 1691
Cdd:TIGR02917  176 D---EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1692 AIKI---NSTAEFLtnRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENEC 1768
Cdd:TIGR02917  253 LLKKapnSPLAHYL--KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQ 330

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1769 ALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKI 1848
Cdd:TIGR02917  331 ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410

                          410
                   ....*....|....*..
gi 2778098841 1849 GLIEEAMCDYNQALDLE 1865
Cdd:TIGR02917  411 GDPSEAIADLETAAQLD 427
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1306-1498 7.22e-22

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 96.14  E-value: 7.22e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1306 ANKPDISTYALLAKAQMKAKRIKESVRLFKKALELYTFSDKGPAATSVSADCLYNLGLCYMEEGNFQMAYESFTKAVRAN 1385
Cdd:COG4785     24 ILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1386 PDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSR-VAYYGLkGRYSKAILNCNEAIRLYPESVRAYICRG 1463
Cdd:COG4785    104 PDLAEAYNNRGLAYLLLGDyDAALEDFDRALELDPDYAYAYLNRgIALYYL-GRYELAIADLEKALELDPNDPERALWLY 182

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 2778098841 1464 vLKYYNRNYKLAITDLTTAVGM------DKNSYTAFYNRAL 1498
Cdd:COG4785    183 -LAERKLDPEKALALLLEDWATayllqgDTEEARELFKLAL 222
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
950-1127 1.45e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 95.37  E-value: 1.45e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  950 DKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCrPKDASLYFKRGEMYEKTNKV-LAIDDFSK 1028
Cdd:COG4785     20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYdLAIADFDQ 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1029 CIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLAL 1108
Cdd:COG4785     99 ALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERA 178

                          170
                   ....*....|....*....
gi 2778098841 1109 YYRACLFRKCSPQRALQDY 1127
Cdd:COG4785    179 LWLYLAERKLDPEKALALL 197
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1699-1834 5.17e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.02  E-value: 5.17e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNS 1778
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1779 VLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDD 1834
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 945-1239 6.05e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.80  E-value: 6.05e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  945 IYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAI 1023
Cdd:COG2956     17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLdRAE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1024 DDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPN 1103
Cdd:COG2956     97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1104 NWLALYYRACLFRKCS-PQRALQDYsvsvlindgydnlncflhrgilytelkfwmlavcdfETVVTLERTATLAYINIGL 1182
Cdd:COG2956    177 CARALLLLAELYLEQGdYEEAIAAL------------------------------------ERALEQDPDYLPALPRLAE 220

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2778098841 1183 IYlQHLDNYTEAFWWFTEAIRVDPLYIQsYICRAETYSKLHKLKKAVTELSRAIHLQ 1239
Cdd:COG2956    221 LY-EKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1043-1341 4.40e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.48  E-value: 4.40e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1043 RGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRAclfrkcspqr 1122
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA---------- 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1123 alQDYsvsvlindgydnlncfLHRGiLYTElkfwmlAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAI 1202
Cdd:COG2956     84 --QDY----------------LKAG-LLDR------AEELLEKLLELDPDDAEALRLLAEIYEQ-EGDWEKAIEVLERLL 137

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1203 RVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMNKgviELSPI 1282
Cdd:COG2956    138 KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP---DYLPA 214

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2778098841 1283 QEAL--IYSFCENHDKAIHVLEGVIANKPDISTYALLAKAQMKAKRIKESVRLFKKALELY 1341
Cdd:COG2956    215 LPRLaeLYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1716-1849 5.80e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 90.74  E-value: 5.80e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1716 QNAMADYQAAISLD---PNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSH 1792
Cdd:COG4785     53 LAAAALAAERIDRAlalPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDR 132

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2778098841 1793 AMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIG 1849
Cdd:COG4785    133 ALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD 189
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1308-1865 6.27e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 97.08  E-value: 6.27e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1308 KPDISTYALLAKAQMKAKRIKESVRLFKKALElytfsdkgpaATSVSADCLYNLGLCYMEEGNFQMAYESFTKAV----- 1382
Cdd:TIGR02917   19 DQSPEELIEAAKSYLQKNKYKAAIIQLKNALQ----------KDPNDAEARFLLGKIYLALGDYAAAEKELRKALslgyp 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1383 --RANPDFAEAfyhrglcKVKLNKQHSILDFNRALTLNPEHYQAYLsrVAYYGL----KGRYSKAILNCNEAIRLYPESV 1456
Cdd:TIGR02917   89 knQVLPLLARA-------YLLQGKFQQVLDELPGKTLLDDEGAAEL--LALRGLaylgLGQLELAQKSYEQALAIDPRSL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1457 RAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGetiALNTLVNRGLI 1536
Cdd:TIGR02917  160 YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN---NIAVLLALATI 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1537 YTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLdayigrgnsymeyeqnkamiq 1616
Cdd:TIGR02917  237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL--------------------- 295

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1617 aqkdflralhldPSNLKARISLGYnlqaQGKFQKAWQHFTIGIEANPKNYLAyegravvclqmsnyfaamQDINCAIKIN 1696
Cdd:TIGR02917  296 ------------PALLLAGASEYQ----LGNLEQAYQYLNQILKYAPNSHQA------------------RRLLASIQLR 341

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1697 staefltnrgvihefMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVT 1776
Cdd:TIGR02917  342 ---------------LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1777 NSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMC 1856
Cdd:TIGR02917  407 KLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486


                   ....*....
gi 2778098841 1857 DYNQALDLE 1865
Cdd:TIGR02917  487 AFEKALSIE 495
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
902-1090 1.25e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.45  E-value: 1.25e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFR 981
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  982 EKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDF 1060
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190
                   ....*....|....*....|....*....|
gi 2778098841 1061 TSLLKLEPHNSQARTNRGRAYFKRNLFKQA 1090
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLL 197
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 887-1128 2.93e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.79  E-value: 2.93e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  887 LELLTQEIKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYN 966
Cdd:COG2956     28 IDLLEEALELDPETVE-AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  967 KNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGM 1045
Cdd:COG2956    107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEKALKLDPDCARALLLLAE 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1046 FYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCSPQRALQ 1125
Cdd:COG2956    187 LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALA 266


                   ...
gi 2778098841 1126 DYS 1128
Cdd:COG2956    267 LLE 269
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 973-1262 3.70e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.79  E-value: 3.70e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  973 YLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENE 1051
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYdRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1052 NWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDYsvs 1130
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAeLYLEQGDYDEAIEAL--- 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1131 vlindgydnlncflhrgilytelkfwmlavcdfETVVTLERTATLAYINIGLIYLQHlDNYTEAFWWFTEAIRVDPLYIQ 1210
Cdd:COG2956    168 ---------------------------------EKALKLDPDCARALLLLAELYLEQ-GDYEEAIAALERALEQDPDYLP 213

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2778098841 1211 SYICRAETYSKLHKLKKAVTELSRAIHLQPDaIHLYIIRGQYLLMMKSYDLA 1262
Cdd:COG2956    214 ALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAA 264
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1384-1507 4.60e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 88.05  E-value: 4.60e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1384 ANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICR 1462
Cdd:COG4785     68 ALPDLAQLYYERGVAYDSLGDyDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2778098841 1463 GVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHE 1507
Cdd:COG4785    148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEK 192
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
932-1112 7.71e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 7.71e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  932 EPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRG 1011
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1012 EMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQA 1090
Cdd:COG0457     84 LALQALGRYeEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                          170       180
                   ....*....|....*....|..
gi 2778098841 1091 TEDFSAAIHSDPNNWLALYYRA 1112
Cdd:COG0457    164 LELLEKLEAAALAALLAAALGE 185
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
997-1238 2.03e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 2.03e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  997 IKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQART 1075
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYeEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1076 NRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDYSVSVLINDgyDNLNCFLHRGILYTELK 1154
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGlALLELGRYDEAIEAYERALELDP--DDADALYNLGIALEKLG 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1155 FWMLAVCDFEtvvTLERTATLAYINIGLIYLQHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSR 1234
Cdd:COG0457    159 RYEEALELLE---KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235


                   ....
gi 2778098841 1235 AIHL 1238
Cdd:COG0457    236 AALA 239
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1462-1729 2.62e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 2.62e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1462 RGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALNTLvnrGLIYTELE 1541
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL---AQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1542 QYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNsymEYEQNKAMIQAQKDF 1621
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE---LYLEQGDYDEAIEAL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1622 LRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEF 1701
Cdd:COG2956    168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                          250       260
                   ....*....|....*....|....*...
gi 2778098841 1702 LTNRGVIHEFMGQQQNAMADYQAAISLD 1729
Cdd:COG2956    248 LLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1359-1653 2.72e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 2.72e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1359 YNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGlckvklnkqhsildfnraltlnpehyQAYLSRvayyglkGRY 1438
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALG--------------------------NLYRRR-------GEY 58

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1439 SKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLL 1518
Cdd:COG2956     59 DRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1519 LQAGETIALNTLvnrGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAY 1598
Cdd:COG2956    139 LGPENAHAYCEL---AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841 1599 IGRGNSYMEYEQNKamiQAQKDFLRALHLDPSNLkARISLGYNLQAQGKFQKAWQ 1653
Cdd:COG2956    216 PRLAELYEKLGDPE---EALELLRKALELDPSDD-LLLALADLLERKEGLEAALA 266
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1735-1865 2.34e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 80.62  E-value: 2.34e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1735 AYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYL 1814
Cdd:COG4783      6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2778098841 1815 KKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLE 1865
Cdd:COG4783     86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1417-1660 5.70e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.89  E-value: 5.70e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1417 LNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVgMDKNSYTAFYNR 1496
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYER 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1497 ALCYTKIKKHEMALRDYGIVLLLQAGETIALNtlvNRGLIYTELEqygfaledfkeasmisetsvklcqatamchhrikE 1576
Cdd:COG4785     80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYN---NRGLAYLLLG----------------------------------D 122

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1577 FQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKAmiqAQKDFLRALHLDPSN----------------LKARISL-- 1638
Cdd:COG4785    123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL---AIADLEKALELDPNDperalwlylaerkldpEKALALLle 199

                          250       260
                   ....*....|....*....|....
gi 2778098841 1639 --GYNLQAQGKFQKAWQHFTIGIE 1660
Cdd:COG4785    200 dwATAYLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1718-1844 1.16e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.12  E-value: 1.16e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1718 AMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELC 1797
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2778098841 1798 PHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQV 1844
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1715-1864 1.90e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 77.65  E-value: 1.90e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1715 QQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALK--------LNPENECALMNRAVTNSVLKKYEEA 1786
Cdd:COG4785     13 ALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAaeridralALPDLAQLYYERGVAYDSLGDYDLA 92

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2778098841 1787 EKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDL 1864
Cdd:COG4785     93 IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1632-1766 1.97e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 74.84  E-value: 1.97e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1632 LKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHE 1710
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1711 FMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPEN 1766
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1314-1459 3.78e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 81.19  E-value: 3.78e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1314 YALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPAatsvSADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFY 1393
Cdd:COG3914     81 LELAALLLQALGRYEEALALYRRALALN------PD----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2778098841 1394 HRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAY 1459
Cdd:COG3914    151 NLGEALRRLGRlEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1541-1871 1.11e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 79.64  E-value: 1.11e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1541 EQYGFALEDFKEASMISETSVKLCQATAmCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSY--------------- 1605
Cdd:TIGR00990  141 KDFNKAIKLYSKAIECKPDPVYYSNRAA-CHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYdglgkyadalldlta 219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1606 ------MEYEQNKAMI------QAQKDFLRALHLDPSNLKARISLGYNLQA-QGKFQKAWQHFTIGIEANPKNYLAYEG- 1671
Cdd:TIGR00990  220 sciidgFRNEQSAQAVerllkkFAESKAKEILETKPENLPSVTFVGNYLQSfRPKPRPAGLEDSNELDEETGNGQLQLGl 299

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1672 RAVVCLQMSNYFAAMQDINCAIKINSTAEFLT----NRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHR 1747
Cdd:TIGR00990  300 KSPESKADESYEEAARAFEKALDLGKLGEKEAialnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG 379

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1748 QFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRA 1827
Cdd:TIGR00990  380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 2778098841 1828 LSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLEEYSKAM 1871
Cdd:TIGR00990  460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
878-1041 2.21e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.04  E-value: 2.21e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  878 EVIKYYESELELltqeikseKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALD 957
Cdd:COG0457     26 EAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  958 DLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKVL-AIDDFSKCIYYDPKR 1036
Cdd:COG0457     98 DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLEAAALAA 177


                   ....*
gi 2778098841 1037 SDALW 1041
Cdd:COG0457    178 LLAAA 182
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 883-1101 2.23e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.54  E-value: 2.23e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  883 YESELELLTQEIKSEKKNpAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFI 962
Cdd:COG2956     58 YDRAIRIHQKLLERDPDR-AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  963 TKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALW 1041
Cdd:COG2956    137 LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALERALEQDPDYLPALP 216

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1042 KRGMFYFENENWTGAVYDFTSLLKLEPHNSQARtNRGRAYFKRNLFKQATEDFSAAIHSD 1101
Cdd:COG2956    217 RLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1138-1341 3.67e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.27  E-value: 3.67e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1138 DNLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAE 1217
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLR-LGRYEEALADYEQALELDPDDAEALNNLGL 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1218 TYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMNKGVIElSPIQEALIYSFCENHDKA 1297
Cdd:COG0457     85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD-ALYNLGIALEKLGRYEEA 163

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 2778098841 1298 IHVLEGVIANKPDISTYALLAKAQMKAKRIKESVRLFKKALELY 1341
Cdd:COG0457    164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1310-1455 3.76e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 71.38  E-value: 3.76e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1310 DISTYALLAKAQMKAKRIKESVRLFKKALELYtfsDKGPAAtsvsadcLYNLGLCYMEEGNFQMAYESFTKAVRANPDFA 1389
Cdd:COG4783      3 CAEALYALAQALLLAGDYDEAEALLEKALELD---PDNPEA-------FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2778098841 1390 EAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPES 1455
Cdd:COG4783     73 EARLNLGLALLKAGDyDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1565-1696 5.08e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.99  E-value: 5.08e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1565 QATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKamiQAQKDFLRALHLDPSNLKARISLGYNLQA 1644
Cdd:COG4783      8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLD---EAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2778098841 1645 QGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN 1696
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1355-1489 6.53e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.61  E-value: 6.53e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYG 1433
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDlDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1434 LKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNS 1489
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1073-1251 8.57e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 72.64  E-value: 8.57e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1073 ARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCSPQRALQDYSVSVLINDgyDNLNCFLHRGILYTE 1152
Cdd:COG4785      8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALP--DLAQLYYERGVAYDS 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1153 LKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTEL 1232
Cdd:COG4785     86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLL-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADL 164

                          170       180
                   ....*....|....*....|...
gi 2778098841 1233 SRAIHLQPD----AIHLYIIRGQ 1251
Cdd:COG4785    165 EKALELDPNdperALWLYLAERK 187
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1365-1528 9.96e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.57  E-value: 9.96e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1365 YMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAIL 1443
Cdd:COG3914     88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRlEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1444 NCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGE 1523
Cdd:COG3914    168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247


                   ....*
gi 2778098841 1524 TIALN 1528
Cdd:COG3914    248 SELSP 252
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1616-1767 1.27e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 69.65  E-value: 1.27e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1616 QAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNylayegravvclqmsnyfaamqdincaiki 1695
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------------------------------ 50

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778098841 1696 nstAEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENE 1767
Cdd:COG4235     51 ---ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1270-1428 1.36e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 71.87  E-value: 1.36e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1270 AEMNKGVIELSPIQEALIYSFCENHDKAIHVLEGVIANKPDISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPA 1349
Cdd:COG4785     32 AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD------PD 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1350 atsvSADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSR 1428
Cdd:COG4785    106 ----LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRyELAIADLEKALELDPNDPERALWL 181
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1568-1665 2.75e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 68.49  E-value: 2.75e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1568 AMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKamiQAQKDFLRALHLDPSNLKARISLGYNLQAQGK 1647
Cdd:COG4235     24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                           90
                   ....*....|....*...
gi 2778098841 1648 FQKAWQHFTIGIEANPKN 1665
Cdd:COG4235    101 YAEAIAAWQKLLALLPAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1720-1832 3.21e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.22  E-value: 3.21e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1720 ADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPH 1799
Cdd:COG5010     41 ELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2778098841 1800 WAALYFNRASFYVYLKKYELAEEDLDRALSLKP 1832
Cdd:COG5010    121 NPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1708-1798 4.68e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.73  E-value: 4.68e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1708 IHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDyFSTALKLNPENECALMNRAVTNSVLKKYEEAE 1787
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|.
gi 2778098841 1788 KDFSHAMELCP 1798
Cdd:COG3063     80 AYLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1591-1761 7.90e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 69.94  E-value: 7.90e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1591 NPRYLDAYIGRGNSYMEYEQNKAmiqAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYE 1670
Cdd:COG4785     69 LPDLAQLYYERGVAYDSLGDYDL---AIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1671 GRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQnAMADYQAAIsldpnyslayfnaGNIYLHHRQF 1749
Cdd:COG4785    146 NRGIALYYLGRYELAIADLEKALELDPNdPERALWLYLAERKLDPEK-ALALLLEDW-------------ATAYLLQGDT 211

                          170
                   ....*....|..
gi 2778098841 1750 SQATDYFSTALK 1761
Cdd:COG4785    212 EEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1505-1752 8.67e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 8.67e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1505 KHEMALRDYGIVLLLQAGETIALNTLVNRGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFF 1584
Cdd:COG3914     56 AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL 135

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1585 TRAIKINPRYLDAYIGRGNSYMEyeqNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPK 1664
Cdd:COG3914    136 RRALALNPDFAEAYLNLGEALRR---LGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1665 NYLAYegravvclqmSNYFAAMQDInCAIkinstaefltnrgvihEFMGQQQNAMADYQAAISLDPNYSLAYFN---AGN 1741
Cdd:COG3914    213 NADAH----------SNLLFALRQA-CDW----------------EVYDRFEELLAALARGPSELSPFALLYLPdddPAE 265

                          250
                   ....*....|.
gi 2778098841 1742 IYLHHRQFSQA 1752
Cdd:COG3914    266 LLALARAWAQL 276
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1666-1798 1.04e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 67.68  E-value: 1.04e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1666 YLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLH 1745
Cdd:COG5010     21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2778098841 1746 HRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCP 1798
Cdd:COG5010    101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 865-1109 1.30e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.10  E-value: 1.30e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  865 LELTDYVKCNLPPEVIKYYESELELLTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHF 944
Cdd:COG3914      7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  945 IYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAI 1023
Cdd:COG3914     87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLeEAI 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1024 DDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQAT--EDFSAAIHSD 1101
Cdd:COG3914    167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDrfEELLAALARG 246


                   ....*...
gi 2778098841 1102 PNNWLALY 1109
Cdd:COG3914    247 PSELSPFA 254
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1742-1833 1.30e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.19  E-value: 1.30e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1742 IYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKdFSHAMELCPHWAALYFNRASFYVYLKKYELAE 1821
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2778098841 1822 EDLDRALSLKPD 1833
Cdd:COG3063     80 AYLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1364-1457 1.34e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.19  E-value: 1.34e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1364 CYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNKQHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAIL 1443
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                           90
                   ....*....|....
gi 2778098841 1444 NCNEAIRLYPESVR 1457
Cdd:COG3063     81 YLERALELDPSALR 94
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1410-1864 1.81e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 72.32  E-value: 1.81e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1410 DFNRALTLNPEHYQAYLSRVAYYGLKGRYSKailNCNEAIRLYPesvRAYICRGVLKYY-NR--------NYKLAITDLT 1480
Cdd:TIGR00990  111 DESSVANLSEEERKKYAAKLKEKGNKAYRNK---DFNKAIKLYS---KAIECKPDPVYYsNRaachnalgDWEKVVEDTT 184

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1481 TAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALNTLVNRGLiyteleqYGFALEDFKEasMISETS 1560
Cdd:TIGR00990  185 AALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKE--ILETKP 255

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1561 VKLCQATAMCHHrIKEFQGAVEF--FTRAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAQKDFLRALhlDPSNLKARISL 1638
Cdd:TIGR00990  256 ENLPSVTFVGNY-LQSFRPKPRPagLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL--DLGKLGEKEAI 332

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1639 GYNLQA-----QGKFQKAWQHFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFM 1712
Cdd:TIGR00990  333 ALNLRGtfkclKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEdPDIYYHRAQLHFIK 412

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1713 GQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSH 1792
Cdd:TIGR00990  413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2778098841 1793 AMELCPHWAALYFNRA-------SFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDL 1864
Cdd:TIGR00990  493 AIELEKETKPMYMNVLplinkalALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 989-1112 2.10e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.80  E-value: 2.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  989 AILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLE 1067
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2778098841 1068 PHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA 1112
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 970-1104 2.48e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.98  E-value: 2.48e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  970 AEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYF 1048
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1049 ENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNN 1104
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1751-1864 4.11e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.03  E-value: 4.11e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1751 QATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSL 1830
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2778098841 1831 KPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDL 1864
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1780-1865 4.12e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 66.14  E-value: 4.12e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1780 LKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYN 1859
Cdd:COG5010     67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146


                   ....*.
gi 2778098841 1860 QALDLE 1865
Cdd:COG5010    147 RALGTS 152
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1699-1798 4.15e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.03  E-value: 4.15e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNS 1778
Cdd:COG4235     17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                           90       100
                   ....*....|....*....|
gi 2778098841 1779 VLKKYEEAEKDFSHAMELCP 1798
Cdd:COG4235     97 QQGDYAEAIAAWQKLLALLP 116
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1354-1460 4.66e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.03  E-value: 4.66e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1354 SADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYY 1432
Cdd:COG4235     16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDtEEAEELLERALALDPDNPEALYLLGLAA 95

                           90       100
                   ....*....|....*....|....*...
gi 2778098841 1433 GLKGRYSKAILNCNEAIRLYPESVRAYI 1460
Cdd:COG4235     96 FQQGDYAEAIAAWQKLLALLPADAPARL 123
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1282-1421 4.87e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.21  E-value: 4.87e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1282 IQEALIYSFCENHDKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPAATSVsadcLYN 1360
Cdd:COG4783      8 YALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELD------PDEPEA----RLN 77

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778098841 1361 LGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEH 1421
Cdd:COG4783     78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRpDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 887-1113 6.35e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.79  E-value: 6.35e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  887 LELLTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYN 966
Cdd:COG3914     63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN 142

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  967 KNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGM 1045
Cdd:COG3914    143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRALELDPDNADAHSNLLF 222

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2778098841 1046 FYFENENWTGAVYDFTSLLKLEphnsqaRTNRGRAYFKRNLFKQATEDFSAAIHsdpNNWLALYYRAC 1113
Cdd:COG3914    223 ALRQACDWEVYDRFEELLAALA------RGPSELSPFALLYLPDDDPAELLALA---RAWAQLVAAAA 281
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1416-1589 8.84e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.86  E-value: 8.84e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1416 TLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYN 1495
Cdd:COG4785     67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1496 RALCYTKIKKHEMALRDYGIVLLLQAGETIAlntLVNRGLIYTELEQygfaledfkeasmiSETSVKLCQATAMCHHRIK 1575
Cdd:COG4785    147 RGIALYYLGRYELAIADLEKALELDPNDPER---ALWLYLAERKLDP--------------EKALALLLEDWATAYLLQG 209

                          170
                   ....*....|....
gi 2778098841 1576 EFQGAVEFFTRAIK 1589
Cdd:COG4785    210 DTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1215-1395 1.19e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.64  E-value: 1.19e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1215 RAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAkLTIFQVAemnkgvIELSP------IQEALIY 1288
Cdd:COG3914     50 ALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA-LALYRRA------LALNPdnaealFNLGNLL 122

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1289 SFCENHDKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPAatsvSADCLYNLGLCYME 1367
Cdd:COG3914    123 LALGRLEEALAALRRALALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELD------PD----NAEALNNLGNALQD 192

                          170       180
                   ....*....|....*....|....*...
gi 2778098841 1368 EGNFQMAYESFTKAVRANPDFAEAFYHR 1395
Cdd:COG3914    193 LGRLEEAIAAYRRALELDPDNADAHSNL 220
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1389-1523 1.26e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 1.26e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1389 AEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKY 1467
Cdd:COG4783      4 AEALYALAQALLLAGDyDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1468 YNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGE 1523
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1526-1665 1.36e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 1.36e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1526 ALNTLVNRGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSY 1605
Cdd:COG4783      3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1606 MEYEQNKamiQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKN 1665
Cdd:COG4783     83 LKAGDYD---EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 954-1075 1.59e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.49  E-value: 1.59e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  954 DALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYY 1032
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTeEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2778098841 1033 DPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQART 1075
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1570-1666 1.88e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.11  E-value: 1.88e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1570 CHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKAMIQaqkdFLRALHLDPSNLKARISLGYNLQAQGKFQ 1649
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA----LEKALKLDPNNAEALLNLAELLLELGDYD 76

                           90
                   ....*....|....*..
gi 2778098841 1650 KAWQHFTIGIEANPKNY 1666
Cdd:COG3063     77 EALAYLERALELDPSAL 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1003-1117 5.14e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 5.14e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1003 DASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAY 1081
Cdd:COG4783      3 CAEALYALAQALLLAGDYdEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 2778098841 1082 FKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRK 1117
Cdd:COG4783     83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 878-1340 5.29e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 67.70  E-value: 5.29e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  878 EVIKYYESELELltqeikseKKNPAFaYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALD 957
Cdd:TIGR00990  145 KAIKLYSKAIEC--------KPDPVY-YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALL 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  958 DLN---FITKYNKNHAEAYL---------SKA-EIFREKND---ITLAILNYSQAIKCRPKDASlYFKRGEMYEKTNKVL 1021
Cdd:TIGR00990  216 DLTascIIDGFRNEQSAQAVerllkkfaeSKAkEILETKPEnlpSVTFVGNYLQSFRPKPRPAG-LEDSNELDEETGNGQ 294

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1022 AiddfskciyydpkrsdALWKRGMFYFENENWTGAVYDFTSLL---KLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAI 1098
Cdd:TIGR00990  295 L----------------QLGLKSPESKADESYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1099 HSDPNNWLALYYRACL-FRKCSPQRALQDYSVSVLINDgyDNLNCFLHRGILYtelkfwmlavcdfetvvtlertatlaY 1177
Cdd:TIGR00990  359 ELDPRVTQSYIKRASMnLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLH--------------------------F 410

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1178 InigliylqhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLL--- 1254
Cdd:TIGR00990  411 I---------KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLdqn 481

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1255 ----MMKSYDLAKLTIFQVAEMNKGVIELspIQEAL-IYSFCENHDKAIHVLEGVIANKPDiSTYALLAKAQMKAK--RI 1327
Cdd:TIGR00990  482 kfdeAIEKFDTAIELEKETKPMYMNVLPL--INKALaLFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQqgDV 558

                          490
                   ....*....|...
gi 2778098841 1328 KESVRLFKKALEL 1340
Cdd:TIGR00990  559 DEALKLFERAAEL 571
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1780-1865 5.43e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.57  E-value: 5.43e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1780 LKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEdLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYN 1859
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83


                   ....*.
gi 2778098841 1860 QALDLE 1865
Cdd:COG3063     84 RALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1508-1663 7.60e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 62.29  E-value: 7.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1508 MALRDYGIVLLLQAGETIALNTLVNRGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRA 1587
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1588 IKINPRYLDAYIGRGNSYMeyeQNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANP 1663
Cdd:COG5010     81 LQLDPNNPELYYNLALLYS---RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1606-1774 1.37e-10

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 63.51  E-value: 1.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1606 MEYEQNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAyegravvclqMSNYFAa 1685
Cdd:TIGR02521   39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV----------LNNYGT- 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1686 mqdincaikinstaeFLTNRgvihefmGQQQNAMADYQAAISlDPNY---SLAYFNAGNIYLHHRQFSQATDYFSTALKL 1762
Cdd:TIGR02521  108 ---------------FLCQQ-------GKYEQAMQQFEQAIE-DPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQI 164

                          170
                   ....*....|..
gi 2778098841 1763 NPENECALMNRA 1774
Cdd:TIGR02521  165 DPQRPESLLELA 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1022-1127 2.01e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.40  E-value: 2.01e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1022 AIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSD 1101
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100
                   ....*....|....*....|....*..
gi 2778098841 1102 PNNWLALYYRA-CLFRKCSPQRALQDY 1127
Cdd:COG4235     82 PDNPEALYLLGlAAFQQGDYAEAIAAW 108
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1403-1531 2.07e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 2.07e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1403 NKQHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTA 1482
Cdd:COG3914     93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2778098841 1483 VGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALNTLV 1531
Cdd:COG3914    173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1296-1426 2.30e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 2.30e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1296 KAIHVLEGVIANKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfSDKGPAAtsvsadcLYNLGLCYMEEGNFQMA 1374
Cdd:COG4235      1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRL---DPDNADA-------LLDLAEALLAAGDTEEA 70

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2778098841 1375 YESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYL 1426
Cdd:COG4235     71 EELLERALALDPDNPEALYLLGLAAFQQGDyAEAIAAWQKLLALLPADAPARL 123
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1072-1334 2.89e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.40  E-value: 2.89e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1072 QARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNW-LALYYRACLFRKCSPQRALQDYSVSVLINDGYDNLNCFLHRGILY 1150
Cdd:COG3914      2 AAAALLALAALAAAALLAAAAAAELALAAELEAAaLAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1151 TELKFWMLAVCDFETVVTLERTA-------TLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLH 1223
Cdd:COG3914     82 ELAALLLQALGRYEEALALYRRAlalnpdnAEALFNLGNLLLA-LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1224 KLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAkLTIFQVAemnkgvIELSPiQEALIYSF----------CEN 1293
Cdd:COG3914    161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA-IAAYRRA------LELDP-DNADAHSNllfalrqacdWEV 232

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 2778098841 1294 HDKAIHVLEGVIANKPDISTYALLAKAQMKAKRIKESVRLF 1334
Cdd:COG3914    233 YDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAW 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 902-1035 3.51e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.82  E-value: 3.51e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFR 981
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841  982 EKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPK 1035
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPdEAIAALEKALELDPD 138
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1190-1587 7.18e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 63.85  E-value: 7.18e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1190 NYTEAFWWFTEAI--RVDPLYiqsYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTiF 1267
Cdd:TIGR00990  142 DFNKAIKLYSKAIecKPDPVY---YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD-L 217

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1268 QVAEMNKGV--IELSPIQEALIYSFCENhdKAIHVLEGVIANKPD---ISTYALLAKAQMKAKRIKESV----------- 1331
Cdd:TIGR00990  218 TASCIIDGFrnEQSAQAVERLLKKFAES--KAKEILETKPENLPSvtfVGNYLQSFRPKPRPAGLEDSNeldeetgngql 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1332 RLFKKALElytfSDKGPAATSVSA---------DCLYNLGLCYMEEGNFQM-------AYESFTKAVRANPDFAEAFYHR 1395
Cdd:TIGR00990  296 QLGLKSPE----SKADESYEEAARafekaldlgKLGEKEAIALNLRGTFKClkgkhleALADLSKSIELDPRVTQSYIKR 371

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1396 GLCKVKLNKQHSIL-DFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYynRNYKL 1474
Cdd:TIGR00990  372 ASMNLELGDPDKAEeDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY--KEGSI 449

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1475 AITDLTTAVGMDKNSYTA----FYNRALcyTKIKKHEMALRDYGIVLLLQA---GETIALNTLVNRGLIYTELEQygfal 1547
Cdd:TIGR00990  450 ASSMATFRRCKKNFPEAPdvynYYGELL--LDQNKFDEAIEKFDTAIELEKetkPMYMNVLPLINKALALFQWKQ----- 522

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*..
gi 2778098841 1548 eDFKEASMISETSVKL---CQATAMCHHRIKEFQG----AVEFFTRA 1587
Cdd:TIGR00990  523 -DFIEAENLCEKALIIdpeCDIAVATMAQLLLQQGdvdeALKLFERA 568
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1580-1687 9.82e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 9.82e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1580 AVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAqkdFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGI 1659
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAA---YEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78

                           90       100
                   ....*....|....*....|....*...
gi 2778098841 1660 EANPKNYLAYEGRAVVCLQMSNYFAAMQ 1687
Cdd:COG4235     79 ALDPDNPEALYLLGLAAFQQGDYAEAIA 106
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 883-1003 1.49e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 1.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  883 YESELELLTQEIKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFI 962
Cdd:COG4783     20 YDEAEALLEKALELDPDNPE-AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 2778098841  963 TKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKD 1003
Cdd:COG4783     99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1733-1868 2.68e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.13  E-value: 2.68e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1733 SLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYV 1812
Cdd:COG2956      8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1813 YLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLEEYS 1868
Cdd:COG2956     88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN 143
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1572-1865 2.89e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 2.89e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1572 HRIKEFQGAVEFFTRAI--KINPRYLDAYIGRGNSYMEYEQNKAMIQAqkdflrALHLDPSNLKARISLGYNLQAQGKFQ 1649
Cdd:TIGR00990  138 YRNKDFNKAIKLYSKAIecKPDPVYYSNRAACHNALGDWEKVVEDTTA------ALELDPDYSKALNRRANAYDGLGKYA 211

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1650 KAWQHFTIG-IEANPKNylayEGRAVVCLQMSNYFAAMQdinCAIKINSTAEFLTNRGVIHEFMG--QQQNAMADYQAAI 1726
Cdd:TIGR00990  212 DALLDLTAScIIDGFRN----EQSAQAVERLLKKFAESK---AKEILETKPENLPSVTFVGNYLQsfRPKPRPAGLEDSN 284

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1727 SLDPNYSLAYFNAGNIYLHHR---QFSQATDYFSTAL---KLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHW 1800
Cdd:TIGR00990  285 ELDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841 1801 AALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLE 1865
Cdd:TIGR00990  365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
902-1028 3.27e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.16  E-value: 3.27e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFR 981
Cdd:COG4785     73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2778098841  982 EKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKVLAIDDFSK 1028
Cdd:COG4785    153 YLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLE 199
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1608-1699 3.32e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.56  E-value: 3.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1608 YEQNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQhFTIGIEANPKNYLAYEGRAVVCLQMSNYFAAMQ 1687
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                           90
                   ....*....|..
gi 2778098841 1688 DINCAIKINSTA 1699
Cdd:COG3063     81 YLERALELDPSA 92
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1408-1517 3.77e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.55  E-value: 3.77e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1408 ILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDK 1487
Cdd:COG4235      3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                           90       100       110
                   ....*....|....*....|....*....|
gi 2778098841 1488 NSYTAFYNRALCYTKIKKHEMALRDYGIVL 1517
Cdd:COG4235     83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1675-1765 5.10e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 5.10e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1675 VCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQNAMAdYQAAISLDPNYSLAYFNAGNIYLHHRQFSQAT 1753
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2778098841 1754 DYFSTALKLNPE 1765
Cdd:COG3063     80 AYLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1006-1105 5.20e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 5.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1006 LYFKRGEmYEKtnkvlAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVyDFTSLLKLEPHNSQARTNRGRAYFKRN 1085
Cdd:COG3063      1 LYLKLGD-LEE-----AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELG 73

                           90       100
                   ....*....|....*....|
gi 2778098841 1086 LFKQATEDFSAAIHSDPNNW 1105
Cdd:COG3063     74 DYDEALAYLERALELDPSAL 93
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1467-1866 6.62e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.77  E-value: 6.62e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1467 YYNRNYKLAITDLTTAVGMDKNSytAFY-NRALCYTKIKKHEMALRDYGIVLLLQAGETIALNtlvNRGLIYTELEQYGF 1545
Cdd:TIGR00990  138 YRNKDFNKAIKLYSKAIECKPDP--VYYsNRAACHNALGDWEKVVEDTTAALELDPDYSKALN---RRANAYDGLGKYAD 212

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1546 ALEDFKEASMISEtsVKLCQATAMCHHRIKEF--QGAVEFF-TRAIKI-NPRYLDAYIGRGNSYMEYEQNKAMIQAQKDF 1621
Cdd:TIGR00990  213 ALLDLTASCIIDG--FRNEQSAQAVERLLKKFaeSKAKEILeTKPENLpSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1622 LRA-LHLDPSNLKARISLGYNlQAQGKFQKAwqhFTIGiEANPKNYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STA 1699
Cdd:TIGR00990  291 GNGqLQLGLKSPESKADESYE-EAARAFEKA---LDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDpRVT 365

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1700 EFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVTNSV 1779
Cdd:TIGR00990  366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1780 LKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYN 1859
Cdd:TIGR00990  446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525


                   ....*..
gi 2778098841 1860 QALDLEE 1866
Cdd:TIGR00990  526 EAENLCE 532
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1146-1262 8.24e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 8.24e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1146 RGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKL 1225
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2778098841 1226 KKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLA 1262
Cdd:COG4783     89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1462-1594 1.56e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 1.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1462 RGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALNTLvnrGLIYTELE 1541
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL---GLALLKAG 86

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2778098841 1542 QYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRY 1594
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1314-1419 3.03e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.97  E-value: 3.03e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1314 YALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPAatsvSADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFY 1393
Cdd:COG5010     57 ESPSDNLYNKLGDFEESLALLEQALQLD------PN----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126

                           90       100
                   ....*....|....*....|....*..
gi 2778098841 1394 HRGLCKVKLNKQHSILD-FNRALTLNP 1419
Cdd:COG5010    127 NLAALLLSLGQDDEAKAaLQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1412-1520 3.18e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 3.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1412 NRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYT 1491
Cdd:COG5010     44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123

                           90       100
                   ....*....|....*....|....*....
gi 2778098841 1492 AFYNRALCYTKIKKHEMALRDYGIVLLLQ 1520
Cdd:COG5010    124 AYSNLAALLLSLGQDDEAKAALQRALGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
914-1092 3.63e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.08  E-value: 3.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  914 KLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNY 993
Cdd:COG4785     51 AALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF 130

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  994 SQAIKCRPKDASLYFKRGEMYEKTNK-VLAIDDFSKCIYYDPKRSDALWKRGMFYFEnenwTGAVYDFTSLLKLEPHNSQ 1072
Cdd:COG4785    131 DRALELDPDYAYAYLNRGIALYYLGRyELAIADLEKALELDPNDPERALWLYLAERK----LDPEKALALLLEDWATAYL 206

                          170       180
                   ....*....|....*....|
gi 2778098841 1073 ARTNRGRAyfkRNLFKQATE 1092
Cdd:COG4785    207 LQGDTEEA---RELFKLALA 223
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1006-1102 4.32e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.20  E-value: 4.32e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1006 LYFKRGEMYEktnkvlAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRN 1085
Cdd:COG5010     63 LYNKLGDFEE------SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136

                           90
                   ....*....|....*..
gi 2778098841 1086 LFKQATEDFSAAIHSDP 1102
Cdd:COG5010    137 QDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1586-1730 4.99e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.20  E-value: 4.99e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1586 RAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKN 1665
Cdd:COG5010      8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1666 YLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQNAMADYQAAISLDP 1730
Cdd:COG5010     88 PELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1314-1796 6.20e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 57.69  E-value: 6.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1314 YAL-LAKAQMKAKRIKEsvrlFKKALELYTFsdkgpaATSVSADCLY--NLGLCYMEEGNFQMAYESFTKAVRANPDFAE 1390
Cdd:TIGR00990  126 YAAkLKEKGNKAYRNKD----FNKAIKLYSK------AIECKPDPVYysNRAACHNALGDWEKVVEDTTAALELDPDYSK 195

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1391 AFYHRGLCKVKLNK-QHSILDFNrALTLNPEHYQAYLSRVAYYGLKgrySKAILNCNEAIRLYPESVRAYICRGvlkyyn 1469
Cdd:TIGR00990  196 ALNRRANAYDGLGKyADALLDLT-ASCIIDGFRNEQSAQAVERLLK---KFAESKAKEILETKPENLPSVTFVG------ 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1470 rNY------KLAITDLTTAVGMDK---NSYTAFYNRALCYTKIKKHEMALRDYGIVLLL-QAGETIALnTLVNRGLIYTE 1539
Cdd:TIGR00990  266 -NYlqsfrpKPRPAGLEDSNELDEetgNGQLQLGLKSPESKADESYEEAARAFEKALDLgKLGEKEAI-ALNLRGTFKCL 343

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1540 LEQYGFALEDFKEA----SMISETSVKLCQATAMCHHRIKefqgAVEFFTRAIKINPRYLDAYIGRGNSYMeYEQNKAmi 1615
Cdd:TIGR00990  344 KGKHLEALADLSKSieldPRVTQSYIKRASMNLELGDPDK----AEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFA-- 416

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1616 QAQKDFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFTIGIEANPKNYLAYegravvclqmsNYFAamqdincaiki 1695
Cdd:TIGR00990  417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY-----------NYYG----------- 474

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1696 nstaEFLTNRgviHEFmgqqQNAMADYQAAISLDPNYSLAYFN-------AGNIYLHHRQFSQATDYFSTALKLNPENEC 1768
Cdd:TIGR00990  475 ----ELLLDQ---NKF----DEAIEKFDTAIELEKETKPMYMNvlplinkALALFQWKQDFIEAENLCEKALIIDPECDI 543

                          490       500
                   ....*....|....*....|....*...
gi 2778098841 1769 ALMNRAVTNSVLKKYEEAEKDFSHAMEL 1796
Cdd:TIGR00990  544 AVATMAQLLLQQGDVDEALKLFERAAEL 571
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1293-1391 1.05e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.92  E-value: 1.05e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1293 NHDKAIHVLEGVIANKPDiSTYA-----LLAKAQMKAKRIKESVRLFKKALELYTFSDKGPAAtsvsadcLYNLGLCYME 1367
Cdd:COG1729      8 DYDEAIAAFKAFLKRYPN-SPLApdalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA-------LLKLGLSYLE 79

                           90       100
                   ....*....|....*....|....
gi 2778098841 1368 EGNFQMAYESFTKAVRANPDFAEA 1391
Cdd:COG1729     80 LGDYDKARATLEELIKKYPDSEAA 103
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 894-1370 1.79e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 1.79e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  894 IKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAY 973
Cdd:TIGR02917  458 EKKQPDNAS-LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  974 LSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTN---KVLAIDDFSKCIYYDPKRsdALWKRGMFYFEN 1050
Cdd:TIGR02917  537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGqlkKALAILNEAADAAPDSPE--AWLMLGRAQLAA 614

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1051 ENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACL-------------FRK 1117
Cdd:TIGR02917  615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLllaakrtesakkiAKS 694

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1118 CSPQRALQDYSVSVLindgydnlncflhrGILYTELKFWMLAVCDFETVVTLERTATLAyINIGLIYLQhLDNYTEAFWW 1197
Cdd:TIGR02917  695 LQKQHPKAALGFELE--------------GDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLA-SGNTAEAVKT 758

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1198 FTEAIRVDP--LYIQSYIcrAETYSKLHKLKKAVTELSRAIHLQPDaiHLYIIRGQYLLMMKSYDLAKLtifqvaEMNKG 1275
Cdd:TIGR02917  759 LEAWLKTHPndAVLRTAL--AELYLAQKDYDKAIKHYQTVVKKAPD--NAVVLNNLAWLYLELKDPRAL------EYAER 828

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1276 VIELSPiqealiysfcenhdkaihvlegviaNKPDIS-TYallAKAQMKAKRIKESVRLFKKALELytfsdkGPAATSVS 1354
Cdd:TIGR02917  829 ALKLAP-------------------------NIPAILdTL---GWLLVEKGEADRALPLLRKAVNI------APEAAAIR 874

                          490
                   ....*....|....*.
gi 2778098841 1355 adclYNLGLCYMEEGN 1370
Cdd:TIGR02917  875 ----YHLALALLATGR 886
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1072-1241 3.33e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 3.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1072 QARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRaclfrkcspqralqdysvsvlindgydnlncflhrGILYT 1151
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL-----------------------------------GEILL 49

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1152 ELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTE 1231
Cdd:COG4783     50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK-AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA 128

                          170
                   ....*....|
gi 2778098841 1232 LSRAIHLQPD 1241
Cdd:COG4783    129 LEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 918-1195 4.33e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 4.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  918 LQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNF---------ITKYNKNHAEAYLSKAEIFREKNDITL 988
Cdd:COG3914     17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLalaageaaaAAAALLLLAALLELAALLLQALGRYEE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  989 AILNYSQAIKCRPKDASLYFKRGEMYEKTNKvlaiddfskciyydpkrsdalwkrgmfyfenenWTGAVYDFTSLLKLEP 1068
Cdd:COG3914     97 ALALYRRALALNPDNAEALFNLGNLLLALGR---------------------------------LEEALAALRRALALNP 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1069 HNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCS-PQRALQDYSVSVLINDGYDNLNCFLHrg 1147
Cdd:COG3914    144 DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGrLEEAIAAYRRALELDPDNADAHSNLL-- 221

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2778098841 1148 ilytelkFWMLAVCDFETVVTLERTATL---AYINIGLIYLQHLDNYTEAF 1195
Cdd:COG3914    222 -------FALRQACDWEVYDRFEELLAAlarGPSELSPFALLYLPDDDPAE 265
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1410-1490 7.75e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 7.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1410 DFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAIlNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNS 1489
Cdd:COG3063     14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92


                   .
gi 2778098841 1490 Y 1490
Cdd:COG3063     93 L 93
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1319-1428 1.11e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.22  E-value: 1.11e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1319 KAQMKAKRIKESVRLFKKALELYtfsdkgpAATSVSADCLYNLGLCYMEEGNFQMAYESFTKAVRANPD---FAEAFYHR 1395
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRY-------PNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKL 73

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2778098841 1396 GLCKVKL-NKQHSILDFNRALTLNPEHYQAYLSR 1428
Cdd:COG1729     74 GLSYLELgDYDKARATLEELIKKYPDSEAAKEAR 107
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1039-1117 1.17e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 1.17e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2778098841 1039 ALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRK 1117
Cdd:COG5010     56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 1699-1834 1.32e-06

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 52.20  E-value: 1.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENECALMNRAVtns 1778
Cdd:PRK11189    64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI--- 140

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1779 vlkkyeeaekdfshamelcphwaALYfnrasfyvYLKKYELAEEDLDRALSLKPDD 1834
Cdd:PRK11189   141 -----------------------ALY--------YGGRYELAQDDLLAFYQDDPND 165
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1413-1553 3.42e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 3.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1413 RALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTA 1492
Cdd:COG5010     11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2778098841 1493 FYNRALCYTKIKKHEMALRDYGIVLLLQAGETIALNtlvNRGLIYTELEQYGFALEDFKEA 1553
Cdd:COG5010     91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS---NLAALLLSLGQDDEAKAALQRA 148
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1355-1388 3.65e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 45.13  E-value: 3.65e-06
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2778098841  1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDF 1388
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1546-1656 3.76e-06

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 49.68  E-value: 3.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1546 ALEDFKEASMISETSVKLCQATAMCHHR-------IKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYEQNKAMIQAq 1618
Cdd:NF040959    83 KTGQYDRAIKVLEKVLSLAPDHVKAAYRkgvallkIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEA- 161

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2778098841 1619 kdFLRALHLDPSNLKARISLGYNLQAQGKFQKAWQHFT 1656
Cdd:NF040959   162 --FQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFK 197
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1431-1521 3.91e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 3.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1431 YYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAItDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMAL 1510
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|.
gi 2778098841 1511 RDYGIVLLLQA 1521
Cdd:COG3063     80 AYLERALELDP 90
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1749-1848 4.01e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 51.33  E-value: 4.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1749 FSQATDYFSTALKLNPENECALMNRAVTNSVLKKYEEAEKDFSHAMELCPHWAALYFNRASFYVYLKKYELAEEDLDRAL 1828
Cdd:PLN03088    18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97

                           90       100
                   ....*....|....*....|
gi 2778098841 1829 SLKPDDAIMYNLRAQVRGKI 1848
Cdd:PLN03088    98 SLAPGDSRFTKLIKECDEKI 117
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1176-1286 4.17e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 4.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1176 AYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLM 1255
Cdd:COG4235     19 GWLLLGRAYLR-LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2778098841 1256 MKSYDLAKLTIFQVAEMNKGVIELSPIQEAL 1286
Cdd:COG4235     98 QGDYAEAIAAWQKLLALLPADAPARLLEASI 128
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1234-1386 5.15e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 5.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1234 RAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMNKGVIELSPIQEALIYSFCENHDKAIHVLEGVIANKPD-IS 1312
Cdd:COG5010     10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNnPE 89

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2778098841 1313 TYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPAATSVsadcLYNLGLCYMEEGNFQMAYESFTKAVRANP 1386
Cdd:COG5010     90 LYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNA----YSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_1 pfam00515
Tetratricopeptide repeat;
1355-1388 6.50e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 6.50e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2778098841 1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDF 1388
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1530-1636 6.56e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 6.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1530 LVNRGLIYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFFTRAIKINPRYLDAYIGRGNSYMEYE 1609
Cdd:COG4235     20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                           90       100
                   ....*....|....*....|....*..
gi 2778098841 1610 QNKamiQAQKDFLRALHLDPSNLKARI 1636
Cdd:COG4235    100 DYA---EAIAAWQKLLALLPADAPARL 123
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1407-1487 7.47e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 7.47e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1407 SILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMD 1486
Cdd:COG5010     73 SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152


                   .
gi 2778098841 1487 K 1487
Cdd:COG5010    153 P 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1536-1633 8.80e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 8.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1536 IYTELEQYGFALEDFKEASMISETSVKLCQATAMCHHRIKEFQGAVEFfTRAIKINPRYLDAYIGRGNSYMEYEQNKami 1615
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYD--- 76

                           90
                   ....*....|....*...
gi 2778098841 1616 QAQKDFLRALHLDPSNLK 1633
Cdd:COG3063     77 EALAYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1176-1339 1.28e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.37  E-value: 1.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1176 AYINIGLIYLqHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLM 1255
Cdd:COG4785     75 LYYERGVAYD-SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1256 MKSYDLAkltifqVAEMNKgVIELSPiqealiysfceNHDKAIHVLEGVIANKPDISTYALL----AKAQMKAKRIKESV 1331
Cdd:COG4785    154 LGRYELA------IADLEK-ALELDP-----------NDPERALWLYLAERKLDPEKALALLledwATAYLLQGDTEEAR 215


                   ....*...
gi 2778098841 1332 RLFKKALE 1339
Cdd:COG4785    216 ELFKLALA 223
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 960-1382 1.60e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.98  E-value: 1.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  960 NFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPkDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSD 1038
Cdd:TIGR00990  117 NLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWeKVVEDTTAALELDPDYSK 195

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1039 ALWKRGMFYFENENWTGAVYDFTSLLKlephNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKC 1118
Cdd:TIGR00990  196 ALNRRANAYDGLGKYADALLDLTASCI----IDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSF 271

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1119 SPQRALQDYSVSVLINDgyDNLNCFLHRGILYTELK---FWMLAVCDFETVVTL-ERTATLAY-INIGLIYLQHLDNYTE 1193
Cdd:TIGR00990  272 RPKPRPAGLEDSNELDE--ETGNGQLQLGLKSPESKadeSYEEAARAFEKALDLgKLGEKEAIaLNLRGTFKCLKGKHLE 349

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1194 AFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKltifqvaemn 1273
Cdd:TIGR00990  350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG---------- 419

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1274 kgvielspiqealiysfcENHDKAIHVlegvianKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsDKGPAATS 1352
Cdd:TIGR00990  420 ------------------KDYQKSIDL-------DPDfIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPDVYN 471

                          410       420       430
                   ....*....|....*....|....*....|
gi 2778098841 1353 VSADCLynlglcyMEEGNFQMAYESFTKAV 1382
Cdd:TIGR00990  472 YYGELL-------LDQNKFDEAIEKFDTAI 494
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 1004-1108 2.52e-05

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 48.35  E-value: 2.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1004 ASLYFKRGEMYEKTN-KVLAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYF 1082
Cdd:PRK11189    64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2778098841 1083 KRNLFKQATEDFSAAIHSDPNN-----WLAL 1108
Cdd:PRK11189   144 YGGRYELAQDDLLAFYQDDPNDpyralWLYL 174
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1811-1865 4.32e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 4.32e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841 1811 YVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMcDYNQALDLE 1865
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLD 55
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1360-1497 5.08e-05

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 46.56  E-value: 5.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1360 NLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLnKQHSILD--FNRALTLNPEHYQAYLSRVAYYGLKGR 1437
Cdd:TIGR02521   36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-GELEKAEdsFRRALTLNPNNGDVLNNYGTFLCQQGK 114

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778098841 1438 YSKAILNCNEAIR--LYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRA 1497
Cdd:TIGR02521  115 YEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1325-1406 5.77e-05

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 46.56  E-value: 5.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1325 KRIKESVRLFKKALELytfsdkgPAATSVsADCLYNLGLCYMEEGNFQMAYESFTKAVRANPDFAEAFYhrGLCKVKLNK 1404
Cdd:TIGR02521  113 GKYEQAMQQFEQAIED-------PLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL--ELAELYYLR 182


                   ..
gi 2778098841 1405 QH 1406
Cdd:TIGR02521  183 GQ 184
TPR_11 pfam13414
TPR repeat;
979-1016 6.65e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 6.65e-05
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2778098841  979 IFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEK 1016
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1287-1387 7.83e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 7.83e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1287 IYSFCENHDKAIHVLEGVIANKPD-ISTYALLAKAQMKAKRIKESVRlFKKALELYtfsdkgpaatSVSADCLYNLGLCY 1365
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDnADALNNLGLLLLEQGRYDEAIA-LEKALKLD----------PNNAEALLNLAELL 69

                           90       100
                   ....*....|....*....|..
gi 2778098841 1366 MEEGNFQMAYESFTKAVRANPD 1387
Cdd:COG3063     70 LELGDYDEALAYLERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1713-1798 9.48e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 9.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1713 GQQQNAMADYQAAISLDPNYSL---AYFNAGNIYLHHRQFSQATDYFSTALKLNPENEC---ALMNRAVTNSVLKKYEEA 1786
Cdd:COG1729      7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKA 86

                           90
                   ....*....|..
gi 2778098841 1787 EKDFSHAMELCP 1798
Cdd:COG1729     87 RATLEELIKKYP 98
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1801-1865 9.82e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 9.82e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841 1801 AALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLE 1865
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD 68
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1185-1274 1.02e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 1.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1185 LQHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKL 1264
Cdd:COG5010     64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                           90
                   ....*....|
gi 2778098841 1265 TIFQVAEMNK 1274
Cdd:COG5010    144 ALQRALGTSP 153
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 387-663 1.38e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.99  E-value: 1.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  387 PEDSGKPADTVLPTSDAKPTRRPTLDV-EPTGFMQIRGKEVKPTYKSTPAKPTKPRIPVRPEEDKkrIKKVPQPPSLPhl 465
Cdd:PTZ00449   588 PKDPEEPKKPKRPRSAQRPTRPKSPKLpELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK--IIKSPKPPKSP-- 663

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  466 hglctivpamELPVDLRLASRVYHTPDRKGHKAvlgllgSSLLGDHCIDEQRERLLFGVPAMSEMQKYTGVTPASAEgLP 545
Cdd:PTZ00449   664 ----------KPPFDPKFKEKFYDDYLDAAAKS------KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPK-LP 726

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  546 GSEQ-TNQREANKANLQLSGEEVSAYPGTSKMFWNLTAPKFAIP---------ESTMRETLYPK---------------- 599
Cdd:PTZ00449   727 RDEEfPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPdilaeefkeEDIHAETGEPDeamkrpdspsehedkp 806

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778098841  600 ---YESVQTSRLLTEKLSESQSEiiLESYTKR-----SFKNLIIKKSASCEDIQKYSSVPYTRLKRSKSTVE 663
Cdd:PTZ00449   807 pgdHPSLPKKRHRLDGLALSTTD--LESDAGRiakdaSGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVD 876
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1681-1766 1.60e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 44.28  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1681 NYFAAMQDINCAIKI----NSTAEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNYSLAYFNAGNIYlHHR--------- 1747
Cdd:PRK02603    50 EYAEALENYEEALKLeedpNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY-HKRgekaeeagd 128

                           90       100
                   ....*....|....*....|....*
gi 2778098841 1748 ------QFSQATDYFSTALKLNPEN 1766
Cdd:PRK02603   129 qdeaeaLFDKAAEYWKQAIRLAPNN 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1162-1242 1.85e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1162 DFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWwFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPD 1241
Cdd:COG3063     14 YYEKALELDPDNADALNNLGLLLLE-QGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91


                   .
gi 2778098841 1242 A 1242
Cdd:COG3063     92 A 92
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 880-1124 2.10e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  880 IKYYESELEL-----LTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKIND 954
Cdd:TIGR02917  574 AQYYLGKGQLkkalaILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  955 ALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMY-EKTNKVLAIDDFSKCIYYD 1033
Cdd:TIGR02917  654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYlRQKDYPAAIQAYRKALKRA 733

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1034 PKrSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRAC 1113
Cdd:TIGR02917  734 PS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW 812

                          250
                   ....*....|.
gi 2778098841 1114 LFRKCSPQRAL 1124
Cdd:TIGR02917  813 LYLELKDPRAL 823
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 1355-1387 2.33e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.81  E-value: 2.33e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2778098841 1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPD 1387
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
911-1002 2.34e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  911 IYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDdLNFITKYNKNHAEAYLSKAEIFREKNDITLAI 990
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2778098841  991 LNYSQAIKCRPK 1002
Cdd:COG3063     80 AYLERALELDPS 91
TPR_1 pfam00515
Tetratricopeptide repeat;
1801-1834 2.73e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 2.73e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2778098841 1801 AALYFNRASFYVYLKKYELAEEDLDRALSLKPDD 1834
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1184-1273 2.89e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 2.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1184 YLQHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVtELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAK 1263
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|
gi 2778098841 1264 LTIFQVAEMN 1273
Cdd:COG3063     80 AYLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 934-1034 3.32e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 3.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  934 LFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEM 1013
Cdd:COG5010     52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131

                           90       100
                   ....*....|....*....|..
gi 2778098841 1014 YEKTNKV-LAIDDFSKCIYYDP 1034
Cdd:COG5010    132 LLSLGQDdEAKAALQRALGTSP 153
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 1318-1476 3.63e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 44.49  E-value: 3.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1318 AKAQMKAKRIKESVRLFKKALELYTFSDKGPAAtsvsadcLYNLGLCYMEEGNFQMA---YESFTKAVRANPDFAEAFYH 1394
Cdd:COG4105     39 AKEALEKGDYEKAIKLFEELEPRYPGSPYAEQA-------QLMLAYAYYKQGDYEEAiaaADRFIKLYPNSPNADYAYYL 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1395 RGLCKVKLnkqhsILDFNRaltlNPEHYQaylsrvayyglkgrysKAILNCNEAIRLYPES-----VRAYI--CRGVL-- 1465
Cdd:COG4105    112 RGLSYYEQ-----SPDSDR----DQTSTR----------------KAIEAFQELINRYPDSeyaedAKKRIdeLRDKLar 166

                          170
                   ....*....|....*....
gi 2778098841 1466 ------KYYNR--NYKLAI 1476
Cdd:COG4105    167 kelevaRYYLKrgAYVAAI 185
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1735-1766 3.79e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 3.79e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 2778098841  1735 AYFNAGNIYLHHRQFSQATDYFSTALKLNPEN 1766
Cdd:smart00028    3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_11 pfam13414
TPR repeat;
1713-1744 3.83e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 3.83e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2778098841 1713 GQQQNAMADYQAAISLDPNYSLAYFNAGNIYL 1744
Cdd:pfam13414    8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYY 39
TPR_1 pfam00515
Tetratricopeptide repeat;
1735-1766 4.88e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.94  E-value: 4.88e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2778098841 1735 AYFNAGNIYLHHRQFSQATDYFSTALKLNPEN 1766
Cdd:pfam00515    3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
1801-1864 5.17e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.45  E-value: 5.17e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778098841 1801 AALYFNRASFYVYLKKYELAEEDLDRALSL--------KPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDL 1864
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1200-1320 5.49e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 5.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1200 EAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQvaemnkgVIEL 1279
Cdd:COG4235      8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER-------ALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2778098841 1280 SPIQE------ALIYSFCENHDKAIHVLEGVIANKPDISTYALLAKA 1320
Cdd:COG4235     81 DPDNPealyllGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1801-1865 6.72e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 6.72e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841 1801 AALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLE 1865
Cdd:COG4235     17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 944-1080 7.11e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 7.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  944 FIYLFQDKINDALDDL-NFITKY--NKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDaslyfkrgemyektnkv 1020
Cdd:COG1729      1 KALLKAGDYDEAIAAFkAFLKRYpnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDS----------------- 63

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1021 laiddfskciyydPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQARTNRGRA 1080
Cdd:COG1729     64 -------------PKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
TPR_1 pfam00515
Tetratricopeptide repeat;
1699-1732 7.23e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.56  E-value: 7.23e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNY 1732
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 875-1001 9.50e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 9.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  875 LPPEVIKYYESELELLTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKIND 954
Cdd:COG5010     27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2778098841  955 ALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRP 1001
Cdd:COG5010    107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1440-1553 1.08e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 1.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1440 KAILNCNEAIRLYPESVRAYICRGVLKYYNRNYKLAITDLTTAVGMDKNSYTAFYNRALCYTKIKKHEMALRDYGIVLLL 1519
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2778098841 1520 QAGETIALNTLvnrGLIYTELEQYGFALEDFKEA 1553
Cdd:COG4235     81 DPDNPEALYLL---GLAAFQQGDYAEAIAAWQKL 111
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1370-1428 1.44e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.85  E-value: 1.44e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1370 NFQMAYESFTKAVRANPDFAEAFYHRGLCKVKLNK-QHSILDFNRALTLNPEHYQAYLSR 1428
Cdd:PLN03088    17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNfTEAVADANKAIELDPSLAKAYLRK 76
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1800-1865 1.50e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 1.50e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2778098841 1800 WAALYFNRASFYVYLKKYELAEEDLDRALSLKPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLE 1865
Cdd:COG5010     53 AFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1806-1865 1.53e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.21  E-value: 1.53e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1806 NRASFYVYLKKYELAEEDLDRALSLkPDDAIMYNLRAQVRGKIGLIEEAMCDYNQALDLE 1865
Cdd:COG4785     45 ALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1169-1263 1.67e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.85  E-value: 1.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1169 LERTATLAYINigliylqhlDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYII 1248
Cdd:PLN03088     5 LEDKAKEAFVD---------DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                           90
                   ....*....|....*
gi 2778098841 1249 RGQYLLMMKSYDLAK 1263
Cdd:PLN03088    76 KGTACMKLEEYQTAK 90
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1801-1834 1.70e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.70e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2778098841  1801 AALYFNRASFYVYLKKYELAEEDLDRALSLKPDD 1834
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
1768-1833 2.06e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 2.06e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2778098841 1768 CALMNRAVTNSVLKKYEEAEKDFSHAMELC-----PHW---AALYFNRASFYVYLKKYELAEEDLDRALSLKPD 1833
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_17 pfam13431
Tetratricopeptide repeat;
1722-1752 2.66e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.14  E-value: 2.66e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2778098841 1722 YQAAISLDPNYSLAYFNAGNIYLHHRQFSQA 1752
Cdd:pfam13431    2 YLKALELDPNNADAYYNLAVLLLELGQSETA 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1699-1732 2.87e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 2.87e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2778098841  1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPNY 1732
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 1389-1496 2.91e-03

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 41.80  E-value: 2.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1389 AEAFYHRGLCKVKLN-KQHSILDFNRALTLNPEHYQAYLSRVAYYGLKGRYSKAILNCNEAIRLYPESVRAYICRGVLKY 1467
Cdd:PRK11189    64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143

                           90       100
                   ....*....|....*....|....*....
gi 2778098841 1468 YNRNYKLAITDLttavgmdknsyTAFYNR 1496
Cdd:PRK11189   144 YGGRYELAQDDL-----------LAFYQD 161
TPR_8 pfam13181
Tetratricopeptide repeat;
1355-1387 3.18e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.61  E-value: 3.18e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2778098841 1355 ADCLYNLGLCYMEEGNFQMAYESFTKAVRANPD 1387
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
1311-1387 3.68e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.14  E-value: 3.68e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2778098841 1311 ISTYALLAKAQMKAKRIKESVRLFKKALELY--TFSDKGPAAtsvsADCLYNLGLCYMEEGNFQMAYESFTKAVRANPD 1387
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrLLGPDHPLT----ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1499-1596 4.12e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 4.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1499 CYTKIKKHEMALRDYGIVLLLQAGETIALNtlvNRGLIYTELEQYGFALEdFKEASMISETSVKLCQATAMCHHRIKEFQ 1578
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALN---NLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76

                           90
                   ....*....|....*...
gi 2778098841 1579 GAVEFFTRAIKINPRYLD 1596
Cdd:COG3063     77 EALAYLERALELDPSALR 94
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1712-1768 4.45e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.46  E-value: 4.45e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2778098841 1712 MGQQQNAMADYQAAISLDPNYSLAYFNAGNIYLHHRQFSQATDYFSTALKLNPENEC 1768
Cdd:cd24142     13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGY 69
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1219-1310 4.81e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 4.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1219 YSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAkLTIFQVAEMNKGVIELSpIQEALIYSFCENHDKAI 1298
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEAL-LNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2778098841 1299 HVLEGVIANKPD 1310
Cdd:COG3063     80 AYLERALELDPS 91
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 1735-1765 4.82e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.35  E-value: 4.82e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2778098841 1735 AYFNAGNIYLHHRQFSQATDYFSTALKLNPE 1765
Cdd:pfam07719    3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 887-1013 4.99e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 4.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841  887 LELLTQEIKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYN 966
Cdd:COG4235      3 IARLRQALAANPNDAE-GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2778098841  967 KNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEM 1013
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
TPR_8 pfam13181
Tetratricopeptide repeat;
1801-1833 5.36e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.22  E-value: 5.36e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2778098841 1801 AALYFNRASFYVYLKKYELAEEDLDRALSLKPD 1833
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 1318-1455 6.14e-03

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 40.23  E-value: 6.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778098841 1318 AKAQMKAKRIKESVRLFKKALELYTFSDKGPAATSVSADCLYNLGlcYMEEGnfQMAYESFTKAVRANPDFAEAFYHRGL 1397
Cdd:TIGR03302   40 AKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--DYAEA--IAAADRFIRLHPNHPDADYAYYLRGL 115

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2778098841 1398 CKVKLnkqhsILDFNRaltlNPEHYQaylsrvayyglkgrysKAILNCNEAIRLYPES 1455
Cdd:TIGR03302  116 SNYNQ-----IDRVDR----DQTAAR----------------EAFEAFQELIRRYPNS 148
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1315-1387 7.67e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.69  E-value: 7.67e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2778098841 1315 ALLAKAQMK--AKRIKESVRLFKKALELYtfsdkgpaATSVSAdcLYNLGLCYMEEGNFQMAYESFTKAVRANPD 1387
Cdd:cd24142      2 ELLEKAEELldQGNFELALKFLQRALELE--------PNNVEA--LELLGEILLELGDVEEAREVLLRAIELDPD 66
TPR_8 pfam13181
Tetratricopeptide repeat;
1699-1731 7.95e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.84  E-value: 7.95e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2778098841 1699 AEFLTNRGVIHEFMGQQQNAMADYQAAISLDPN 1731
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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