NCBI Conserved Domain Search

Conserved domains on [gi|2469475780|ref|NP_001406085|]

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serine/threonine-protein kinase VRK3 isoform 5 [Mus musculus]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10591252)

zinc ribbon domain-containing protein consists of a single zinc ribbon domain; similar to Arabidopsis thaliana protein At2g02148

Gene Ontology: GO:0008270

PubMed: 32851833

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

zinc_ribbon_2

pfam13240

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...

4-24

2.28e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.

Pssm-ID: 433054 [Multi-domain] Cd Length: 21 Bit Score: 32.86 E-value: 2.28e-03

                          10        20
                  ....*....|....*....|.
gi 2469475780   4 FCPVCGKSVKVSFKFCPYCGK 24
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21

Name

Accession

Description

Interval

E-value

zinc_ribbon_2

pfam13240

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...

4-24

2.28e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.

Pssm-ID: 433054 [Multi-domain] Cd Length: 21 Bit Score: 32.86 E-value: 2.28e-03

                          10        20
                  ....*....|....*....|.
gi 2469475780   4 FCPVCGKSVKVSFKFCPYCGK 24
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21

COG3877

Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family ...

1-23

3.08e-03

Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family [Transcription];

Pssm-ID: 443085 Cd Length: 120 Bit Score: 34.42 E-value: 3.08e-03

                          10        20
                  ....*....|....*....|...
gi 2469475780   1 MISFCPVCGKSVKVSFKFCPYCG 23
Cdd:COG3877     5 VPTKCPVCGGELIVTRLKCPSCG 27

Name

Accession

Description

Interval

E-value

zinc_ribbon_2

pfam13240

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...

4-24

2.28e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.

Pssm-ID: 433054 [Multi-domain] Cd Length: 21 Bit Score: 32.86 E-value: 2.28e-03

                          10        20
                  ....*....|....*....|.
gi 2469475780   4 FCPVCGKSVKVSFKFCPYCGK 24
Cdd:pfam13240   1 FCPNCGAENPDGAKFCPKCGA 21

COG3877

Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family ...

1-23

3.08e-03

Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family [Transcription];

Pssm-ID: 443085 Cd Length: 120 Bit Score: 34.42 E-value: 3.08e-03

                          10        20
                  ....*....|....*....|...
gi 2469475780   1 MISFCPVCGKSVKVSFKFCPYCG 23
Cdd:COG3877     5 VPTKCPVCGGELIVTRLKCPSCG 27

DZR

pfam12773

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.

4-23

4.01e-03

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.

Pssm-ID: 432773 [Multi-domain] Cd Length: 45 Bit Score: 32.73 E-value: 4.01e-03

                          10        20
                  ....*....|....*....|
gi 2469475780   4 FCPVCGKSVKVSFKFCPYCG 23
Cdd:pfam12773  26 RCPNCGAPVPPNARFCPYCG 45

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01