|
Name |
Accession |
Description |
Interval |
E-value |
| BicD |
pfam09730 |
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled ... |
74-711 |
0e+00 |
|
Microtubule-associated protein Bicaudal-D; BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells.
Pssm-ID: 462863 [Multi-domain] Cd Length: 717 Bit Score: 815.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 74 GQSFSIHRKVAEDGETREETLLQESASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIR 153
Cdd:pfam09730 1 GQSVSSHKKVAADGESREESLLQESASKEAYYAQRILELQNELKQARAVLSNTQAENERLASLSQELKEECECVELQRGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 154 MKDEIREYKFREARLLQDYTELEEENITLQKLVSTLKQNQfyesslscliqVEYEGLKHEIKRFEEETVLLNSQLEDAIR 233
Cdd:pfam09730 81 MRDEIKEYKVREARLLQDYSELEEENISLQKQVSVLKQNQ-----------VEFEGLKHEITRKEEETELLNSQLEEAIR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 234 LKEIAEHQLEEALETLKNEREQKNNLRKELSQYISLND----NHISISVDGLKFAED---GSEPNND-DKMNGHIHG--P 303
Cdd:pfam09730 150 LREIAERQLDEALETLKTEREQKNSLRKELSHYMTLNDfdyvSHLSISLDGLKFSEDegaGTEPNNDgEAMDGGENGggG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 304 LVKLNGDYRTPTLRKGESLNP----VSDLFSELNISEIQKLKQQLMQVEREKAILLANLQESQTQLEHTKGALTEQHERV 379
Cdd:pfam09730 230 LKNSGLDNRTSTPRKSEVFPPapslVSDLLSELNISEIQKLKQQLIQVEREKVSLLSTLQESQKQLEQAKGALSEQQEKV 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 380 HRLTEHVNAMRGLQSSKELKAELDGEKGRDSGEEAHDYEVDINGLEILECKYRVAVTEVIDLKAEIKALKEKYNKSVENY 459
Cdd:pfam09730 310 NRLTENLEAMRGLQASKERQDALDSEKDRDSHEDGDYYEVDINGPEILECKYRVAVEEAGELREELKALKARYNTLEERY 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 460 TDEKAKYESKIQMYDEQVTSLEKTTKESGEKMAHMEKELQKMTSIANENHSTLNTAQDELVTFSEELAQLYHHVCLCNNE 539
Cdd:pfam09730 390 KEEKTRWEAEAQDLAEKIRQLEKASHQDQERIAHLEKELGKTRKVAGESEGSLSVAQDELVTFSEELANLYHHVCMCNNE 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 540 TPNRVMLDYYRQSRVTRSGslKGPDDPRGLLSPRLARRGVsspvetrTSSEPVAKESTeaSKEPSPTKTPTISPvitapp 619
Cdd:pfam09730 470 TPNRVMLDYYREGAGARAR--KSHQEPRGLRSPRLLTRGL-------FMGEVGTADTT--SNSPSPCSSCPGSP------ 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 620 sspvldTSDIRKEPMNIYNLNAIIRDQIKHLQKAVDRSLQLSRQRAAARELAPMIDKDKEALMEEILKLKSLLSTKREQI 699
Cdd:pfam09730 533 ------TSDFRREPMNIYNLVAIIRDQIKHLQVAVDRTTELSRQRGAALELSTESDKDKEALMEEILKLKSLLSTKREQI 606
|
650
....*....|..
gi 2321695079 700 ATLRAVLKANKQ 711
Cdd:pfam09730 607 ATLRTVLKANKQ 618
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
120-482 |
7.12e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 7.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 120 RAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARLLQDYTELEEENITLQKLVSTLKQNQFYESSL 199
Cdd:TIGR02168 669 NSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 200 SCLIQVEYEGLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQLEEALETLKNEREQKNNLRKELSQyislndnhISISVD 279
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL--------LNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 280 GLKFAEDGSEPNNDD--KMNGHIHGPLVKLNGDyrtptlrkGESLNP-VSDLFSELN--ISEIQKLKQQLMQVEREKAIL 354
Cdd:TIGR02168 821 NLRERLESLERRIAAteRRLEDLEEQIEELSED--------IESLAAeIEELEELIEelESELEALLNERASLEEALALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 355 LANLQESQTQLEHTKGALTEQHERVHRLTEHVNAMRGLQSskELKAELDGEKGRDSGEEAHDYEVDINGLEILECKYRVA 434
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLE--GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2321695079 435 VTEVIDLKAEIKALKEKYNKSVENYTDEKAKYESKIQMYDEQVTSLEK 482
Cdd:TIGR02168 971 RRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-529 |
9.51e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 9.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 1 MAAEEVLQTVDHYKTEIERLTKELtETTHEKIQAAEYGLVVLEEKL-TLKQQYDELEAEYDSLKQELEQLK---EAFGQS 76
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQK-QILRERLANLERQLEELEAQLeELESKLDELAEELAELEEKLEELKeelESLEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 77 FSIHRKVAEDGETREETL---LQESASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIR 153
Cdd:TIGR02168 360 LEELEAELEELESRLEELeeqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 154 M-----KDEIREYKFREARLLQDYTELEEE-NITLQKLVSTLKQNQFYESSLSCL--IQVEYEGLKHEIKRFEEETVLLN 225
Cdd:TIGR02168 440 AeleelEEELEELQEELERLEEALEELREElEEAEQALDAAERELAQLQARLDSLerLQENLEGFSEGVKALLKNQSGLS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 226 ---SQLEDAIRLKEIAEHQLEEAL-------------------ETLK----------------------NEREQKNNLRK 261
Cdd:TIGR02168 520 gilGVLSELISVDEGYEAAIEAALggrlqavvvenlnaakkaiAFLKqnelgrvtflpldsikgteiqgNDREILKNIEG 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 262 ELSQYISLNDNHISISV------DGLKFAEDGSEPNNDDKMNGHiHGPLVKLNGDyrtpTLRKGESLNPVSDLFSELNIS 335
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKalsyllGGVLVVDDLDNALELAKKLRP-GYRIVTLDGD----LVRPGGVITGGSAKTNSSILE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 336 ---EIQKLKQQLMQVEREKAILLANLQESQTQLEHTKGALTEQHERVHRLTEHVNAMRGLQSSKELKAELDGEKGRDSGE 412
Cdd:TIGR02168 675 rrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 413 EAHDYEVDING----LEILECKYRVAVTEVIDLKAEIKALKEKYNKSVENYTDEKAKY----------ESKIQMYDEQVT 478
Cdd:TIGR02168 755 ELTELEAEIEEleerLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneeaanlRERLESLERRIA 834
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 2321695079 479 SLEKTTKESGEKMAHMEKELQKMTSIANENHSTLNTAQDELVTFSEELAQL 529
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
320-539 |
2.60e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 320 ESLNPVSDLFSELNiSEIQKLKQQLMQVEREKAIllaNLQESQTQLEHTKGALTEQHERVHRLTEHVNAMRGLQssKELK 399
Cdd:TIGR02168 186 ENLDRLEDILNELE-RQLKSLERQAEKAERYKEL---KAELRELELALLVLRLEELREELEELQEELKEAEEEL--EELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 400 AELDGEKGRDSGEEAHDYEVDiNGLEILECKYRVAVTEVIDLKAEIKALKEK---YNKSVENYTDEKAKYESKIQMYDEQ 476
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELE-EEIEELQKELYALANEISRLEQQKQILRERlanLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2321695079 477 VTSLEKTTKESGEKMAHMEKELQKMTSIANENHSTLNTAQDELVTFSEELAQLYHHVCLCNNE 539
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
46-265 |
5.27e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 5.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 46 LTLKQQYDELEAE-----YDSLKQELEQLKEAfgqsfsihRKVAEDGETREETLLQESASKEAYYLGKILEMQNELKQSR 120
Cdd:COG1196 216 RELKEELKELEAEllllkLRELEAELEELEAE--------LEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 121 AVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARLLQDYTELEEENITLQKLVSTLKQNqfyessls 200
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-------- 359
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2321695079 201 cLIQVE--YEGLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQLEEALETLKNEREQKNNLRKELSQ 265
Cdd:COG1196 360 -LAEAEeaLLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
42-263 |
1.05e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 42 LEEKLT-LKQQYDELEAEYDSLKQELEQLKEAFGQsfsihRKVAEDGETREETLLQESASKEAYYLGKILEMQN----EL 116
Cdd:TIGR02168 682 LEEKIEeLEEKIAELEKALAELRKELEELEEELEQ-----LRKELEELSRQISALRKDLARLEAEVEQLEERIAqlskEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 117 KQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIR--EYKFREARllqdyTELEEENITLQKLVSTLKQNQF 194
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKalREALDELR-----AELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2321695079 195 YESSLscliQVEYEGLKHEIKRFEEETVLLNSQLEDAirlkEIAEHQLEEALETLKNEREQKNNLRKEL 263
Cdd:TIGR02168 832 RIAAT----ERRLEDLEEQIEELSEDIESLAAEIEEL----EELIEELESELEALLNERASLEEALALL 892
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
43-265 |
1.39e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 43 EEKLTLKQQYDELEAEYDSLKQELEQLKEAFGQSFS----IHRKVAEDGETREETLLQESASKEayylgKILEMQNELKQ 118
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQelsdASRKIGEIEKEIEQLEQEEEKLKE-----RLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 119 SRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARllQDYTELEEENITLQKLVSTLKQ------- 191
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ--AELSKLEEEVSRIEARLREIEQklnrltl 826
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2321695079 192 NQFYESSLSCLIQVEYEGLKHEIKRFEEETVLLNSQLED---AIRLKEIAEHQLEEALETLKNEREqknNLRKELSQ 265
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEleeELEELEAALRDLESRLGDLKKERD---ELEAQLRE 900
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
14-259 |
1.95e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 14 KTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEAFGQSFSIHRKvAEDGETREET 93
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE-LRAELTLLNE 817
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 94 LLQESASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARLLQDYT 173
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 174 ELEEENITLQKLVSTLKQN-QFYESSLSClIQVEYEGLKHEIKRFEEE-TVLLNSQLEDAIRLKEIAEHQLEEALETLKN 251
Cdd:TIGR02168 898 ELSEELRELESKRSELRRElEELREKLAQ-LELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
....*...
gi 2321695079 252 EREQKNNL 259
Cdd:TIGR02168 977 LENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-266 |
2.73e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 2 AAEEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEafgqsfsihr 81
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE---------- 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 82 kvaedgetREETLLQESASKEAyylgKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREY 161
Cdd:COG1196 338 --------ELEELEEELEEAEE----ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 162 KFREARLLQDYTELEEENITLQKLVSTLKQNQFYESSlscliqvEYEGLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQ 241
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEE-------ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
250 260
....*....|....*....|....*
gi 2321695079 242 LEEALETLKNEREQKNNLRKELSQY 266
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3-262 |
5.11e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 3 AEEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQY--------------DELEAEYDSLKQELEQ 68
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeelkalrealDELRAELTLLNEEAAN 821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 69 LKEAFGQsfsiHRKVAEDGETREETLLQESASKEAyylgKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVE 148
Cdd:TIGR02168 822 LRERLES----LERRIAATERRLEDLEEQIEELSE----DIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 149 LQRIRMKDEIREYKFREARLLQDYTELEEENITLQKLVSTLKQN-QFYESSLSCLIQVEYEglkhEIKRFEEETVLLNSQ 227
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRiDNLQERLSEEYSLTLE----EAEALENKIEDDEEE 969
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2321695079 228 LEDAIR-----LKEIAEHQLeEALETLKNEREQKNNLRKE 262
Cdd:TIGR02168 970 ARRRLKrlenkIKELGPVNL-AAIEEYEELKERYDFLTAQ 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-533 |
6.16e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 6.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 4 EEVLQTVDHYKTEIERLTKELTETTHE------KIQAAEYGLVVLEEKL-TLKQQYDELEAEYDSLKQELEQLKEafgqS 76
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEElesleaELEELEAELEELESRLeELEEQLETLRSKVAQLELQIASLNN----E 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 77 FSIHRKVAEDGETREETLLQE-SASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMK 155
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEiEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 156 DEIREYKFREARLlqdyTELEEENITLQKLVSTLKQNQF----YESSLSCLIQVEyEGLKHEIkrfeeETVL---LNSQL 228
Cdd:TIGR02168 482 RELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSglsgILGVLSELISVD-EGYEAAI-----EAALggrLQAVV 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 229 -EDAIRLKEIAEHQLEEALETL--------------KNEREQKNNLRKELSQYISLNDNHISISV------DGLKFAEDG 287
Cdd:TIGR02168 552 vENLNAAKKAIAFLKQNELGRVtflpldsikgteiqGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllGGVLVVDDL 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 288 SEPNNDDKMNGHiHGPLVKLNGDyrtpTLRKGESLNPVSDLFSELNIS---EIQKLKQQLMQVEREKAILLANLQESQTQ 364
Cdd:TIGR02168 632 DNALELAKKLRP-GYRIVTLDGD----LVRPGGVITGGSAKTNSSILErrrEIEELEEKIEELEEKIAELEKALAELRKE 706
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 365 LEHTKGALTEQHERVHRLTEHVNAMRGLQSSKELKAELDGEKGRDSGEEAHDYEVDINGL---------EILECKY-RVA 434
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELeerleeaeeELAEAEAeIEE 786
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 435 VTEVID---------------LKAEIKALKEKYNKSVENYTDEKAKYESKIQMYD----------EQVTSLEKTTKESGE 489
Cdd:TIGR02168 787 LEAQIEqlkeelkalrealdeLRAELTLLNEEAANLRERLESLERRIAATERRLEdleeqieelsEDIESLAAEIEELEE 866
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2321695079 490 KMAHMEKELQKMTSIANENHSTLNTAQDELVTFSEELAQLYHHV 533
Cdd:TIGR02168 867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-252 |
7.46e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 2 AAEEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEAfgqsfsihR 81
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE--------L 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 82 KVAEDGETREETLLQESASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREY 161
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 162 KFREARLLQDYTELEEENITLQKLVSTLKQNQFYEsslscliQVEYEGLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQ 241
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL-------LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
250
....*....|.
gi 2321695079 242 LEEALETLKNE 252
Cdd:COG1196 507 LEGVKAALLLA 517
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
16-191 |
1.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 16 EIERLTKELTETThEKIQAAEYGLVVLEEKL-TLKQQYDELEAEYDSLKQEL-EQLKEAFGQSFSIHRKVAEDGETREEt 93
Cdd:COG4942 56 QLAALERRIAALA-RRIRALEQELAALEAELaELEKEIAELRAELEAQKEELaELLRALYRLGRQPPLALLLSPEDFLD- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 94 llqesASKEAYYLGKILE-MQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARLLQDY 172
Cdd:COG4942 134 -----AVRRLQYLKYLAPaRREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL 208
|
170
....*....|....*....
gi 2321695079 173 TELEEENITLQKLVSTLKQ 191
Cdd:COG4942 209 AELAAELAELQQEAEELEA 227
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
43-265 |
1.42e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 43 EEKLTLKQQYDELE-----AEYDSLKQELEQLKEAFgqsfsihrKVAEDGETREETLLQESASKEAYYLGKILEMQNELK 117
Cdd:TIGR02168 213 ERYKELKAELRELElallvLRLEELREELEELQEEL--------KEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 118 QSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARLLQDYTELEEENITLQK-------LVSTLK 190
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEelesleaELEELE 364
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2321695079 191 QNQFYESSLSCLIQVEYEGLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQLEEALETLKNEREQKNNLRKELSQ 265
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
336-529 |
3.26e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 336 EIQKLKQQLMQVEREKAILLANLQESQTQLEHTKGALTEQHERVHRLTEHVNAMRGLQSSKELKAELDGEKGRDSGEEAH 415
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 416 DYEVDINGLEILECKYRVAVTEVIDLKAEIKALKEKYNKSVENYTDEKAKYESKIQMYDEQVTSLEKTTKESGEKMAHME 495
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
170 180 190
....*....|....*....|....*....|....
gi 2321695079 496 KELQkmtsianENHSTLNTAQDELVTFSEELAQL 529
Cdd:TIGR02168 400 NEIE-------RLEARLERLEDRRERLQQEIEEL 426
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
48-265 |
6.01e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 48 LKQQYDELEAEYDSLKQELEQLKEAFGQSfsihrkvaeDGETREETLLQESASKEAyylgKILEMQNELKQSRAVVTNVQ 127
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLV---------DLSEEAKLLLQQLSELES----QLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 128 AENERLTAVVQDLKENNEMVELqrirmKDEIREYKFREARLLQDYTeleEENITLQKLVSTLKQnqfYESSLSCLIQVEY 207
Cdd:COG3206 247 AQLGSGPDALPELLQSPVIQQL-----RAQLAELEAELAELSARYT---PNHPDVIALRAQIAA---LRAQLQQEAQRIL 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2321695079 208 EGLKHEIKRFEEETVLLNSQLEDA-IRLKEIAEHQLEeaLETLKNEREQKNNLRKELSQ 265
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLeARLAELPELEAE--LRRLEREVEVARELYESLLQ 372
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
15-512 |
6.12e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 6.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 15 TEIERLTKELTETTHEKIQAAEYglvvLEEKLTLK-QQYDELEAEYDSLKQELEQLKEAFGQSFSIHRKVAEDGETREET 93
Cdd:pfam05483 250 TEKENKMKDLTFLLEESRDKANQ----LEEKTKLQdENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKT 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 94 LLQESASKEAYylgkiLEMQNELKQSRA-VVTNVQAEN---ERLTAVVQDLKENNEMvELQRIRMKDEIREYKFREARLL 169
Cdd:pfam05483 326 ICQLTEEKEAQ-----MEELNKAKAAHSfVVTEFEATTcslEELLRTEQQRLEKNED-QLKIITMELQKKSSELEEMTKF 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 170 QDYTELEEENItlqKLVSTLKQNQFYESSlscliqvEYEGLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQLEEALE-T 248
Cdd:pfam05483 400 KNNKEVELEEL---KKILAEDEKLLDEKK-------QFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEhY 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 249 LKNEREQKNNLRKELSQYISLNDNHISISVDGLKFAEDGSepnnDDKMNGHIHGPLVKLNGDYRTPTLRKGESLNPvsdl 328
Cdd:pfam05483 470 LKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEAS----DMTLELKKHQEDIINCKKQEERMLKQIENLEE---- 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 329 fSELNI-SEIQKLKQQLMQVEREKAILLANLQESQTQLEHTKGALTEQHERVHRLTEHVNAMRGLQSS--KELKAELDGE 405
Cdd:pfam05483 542 -KEMNLrDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKniEELHQENKAL 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 406 KGRDSGE--EAHDYEVDINGLEILECKYRVAVTEVID-LKAEIKALKEKYNKSVENYTDEKAKYESKIQMYDEQVtslEK 482
Cdd:pfam05483 621 KKKGSAEnkQLNAYEIKVNKLELELASAKQKFEEIIDnYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEID---KR 697
|
490 500 510
....*....|....*....|....*....|
gi 2321695079 483 TTKESGEKMAHMEKELQKMTSIANENHSTL 512
Cdd:pfam05483 698 CQHKIAEMVALMEKHKHQYDKIIEERDSEL 727
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
4-151 |
6.53e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 4 EEVLQTVDHYKTEIERLTKELTETTHE--KIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEAFGQSFSIHR 81
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREEleKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2321695079 82 KVAEDGETREETLLQESASKEA---YYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQR 151
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEelqDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
11-460 |
9.07e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 9.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 11 DHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKEAFGQSFSiHRKVAEDGETR 90
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLK-LNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 91 EETLLQESASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREykfrearllq 170
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE---------- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 171 dytELEEENITLQKLVSTLKQNQFYESSlscliqveyegLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQLEEALETLK 250
Cdd:pfam02463 315 ---KLKESEKEKKKAEKELKKEKEEIEE-----------LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 251 NEREQKNNLRKELSQYISLNDNHISISVDGLKFAEDgsepNNDDKMNGHIHGPLVKLngdyrtpTLRKGESLNPVSDLFS 330
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQ----LEDLLKEEKKEELEILE-------EEEESIELKQGKLTEE 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 331 ELNISEIQKLKQQLMQVEREKAILLANLQESQTQLEHTKG-ALTEQHERVHRLTEHVNAMRGLQSSKELKAELDGEKGRD 409
Cdd:pfam02463 450 KEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLlSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHG 529
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 2321695079 410 SGEEAHDYEVDINGLEILECKYRVAVTEVIDLKAEIKALKEKYNKSVENYT 460
Cdd:pfam02463 530 RLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKL 580
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
48-401 |
3.13e-03 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 40.86 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 48 LKQQYDELE---AEYDSLKQELEQlkeAFGQSFSihrKVAEDGETREETLLQESASKEAYYLgKILEMQNELKQSRAVVT 124
Cdd:pfam03528 6 LQQRVAELEkenAEFYRLKQQLEA---EFNQKRA---KFKELYLAKEEDLKRQNAVLQEAQV-ELDALQNQLALARAEME 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 125 NVQA-----ENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARLLQ-------DYTE-LEEENITLQKLVSTLKQ 191
Cdd:pfam03528 79 NIKAvatvsENTKQEAIDEVKSQWQEEVASLQAIMKETVREYEVQFHRRLEqeraqwnQYREsAEREIADLRRRLSEGQE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 192 NQFYESSLScLIQVEYEGLKHEIKRFEEETVLLNSQLEDA-IRLKEIAEHQLEEaletLKNEREQKNNLRKELSQYISLN 270
Cdd:pfam03528 159 EENLEDEMK-KAQEDAEKLRSVVMPMEKEIAALKAKLTEAeDKIKELEASKMKE----LNHYLEAEKSCRTDLEMYVAVL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 271 DNHISIsvdglkFAEDGsepnndDKMNGHIHGPLVKLNGDYRTPTLRKgESLNPVSDLFSE---LNISEIQKLK-----Q 342
Cdd:pfam03528 234 NTQKSV------LQEDA------EKLRKELHEVCHLLEQERQQHNQLK-HTWQKANDQFLEsqrLLMRDMQRMEsvltsE 300
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 343 QLMQVEREKaillANLQESQTQLEHTKGALTEQHERVHRLTEH-VNAMRGLQSSKELKAE 401
Cdd:pfam03528 301 QLRQVEEIK----KKDQEEHKRARTHKEKETLKSDREHTVSIHaVFSPAGVETSAPLSNV 356
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
336-503 |
4.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 336 EIQKLKQQLMQVEREkailLANLQESQTQLEhtkgalTEQHERVHRLTEHVNAMRGLQSSKELKAELDGEKGRDSGEEAH 415
Cdd:COG4942 70 RIRALEQELAALEAE----LAELEKEIAELR------AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 416 DYEVDINGLEILECKYRVAVTEVIDLKAEIKALKEKYNKSVENYTDEKAKYESKIQMYDEQVTSLEKTTKESGEKMAHME 495
Cdd:COG4942 140 YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
....*...
gi 2321695079 496 KELQKMTS 503
Cdd:COG4942 220 QEAEELEA 227
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
17-231 |
5.21e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 17 IERLTKELTETTHEKIQAAEYG--LVVLEEKL-TLK---QQYDELEAEYDSLKQELEQLKE-AFGQSFSIHRKVAEDGET 89
Cdd:COG3096 895 LEELREELDAAQEAQAFIQQHGkaLAQLEPLVaVLQsdpEQFEQLQADYLQAKEQQRRLKQqIFALSEVVQRRPHFSYED 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 90 REETLLQESASKEAYYlGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKEN----NEMV-ELQRiRMKD-EIREYKF 163
Cdd:COG3096 975 AVGLLGENSDLNEKLR-ARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSrdakQQTLqELEQ-ELEElGVQADAE 1052
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2321695079 164 REARLLQDYTELEEE-NITLQKLVSTLKQNQFYESslscliqvEYEGLKHEIKRFEEETVLLNSQLEDA 231
Cdd:COG3096 1053 AEERARIRRDELHEElSQNRSRRSQLEKQLTRCEA--------EMDSLQKRLRKAERDYKQEREQVVQA 1113
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
14-524 |
5.61e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 14 KTEIERLTKELT---ETTHEKIQAAEYGLVVLEEKLTlkqqyDELEAEYDSLKQELEQLKEAFGQSfsihrKVAEDGET- 89
Cdd:pfam12128 389 NRDIAGIKDKLAkirEARDRQLAVAEDDLQALESELR-----EQLEAGKLEFNEEEYRLKSRLGEL-----KLRLNQATa 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 90 REETLLQESASKEAyylgkILEMQNELKQSRAVVTNVQAENERLtavvqDLKENNEMVELQRIrmkdeireykfrEARLL 169
Cdd:pfam12128 459 TPELLLQLENFDER-----IERAREEQEAANAEVERLQSELRQA-----RKRRDQASEALRQA------------SRRLE 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 170 QDYTELEEENITLQKLVSTL-----KQNQFYESSLSCLIQVEYEGlkheikRFEEETVLLNSQLEDA-------IRLKEI 237
Cdd:pfam12128 517 ERQSALDELELQLFPQAGTLlhflrKEAPDWEQSIGKVISPELLH------RTDLDPEVWDGSVGGElnlygvkLDLKRI 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 238 ---AEHQLEEAL--------ETLKNEREQKNNLRKELSQyislndnhISISVD----GLKFAEDGSEPNNDDkmnghihg 302
Cdd:pfam12128 591 dvpEWAASEEELrerldkaeEALQSAREKQAAAEEQLVQ--------ANGELEkasrEETFARTALKNARLD-------- 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 303 pLVKLNGDYRTPTLRKGESLNpvsdlfselniSEIQKLKQQLMQVEREKAILLANLQESQTQLEHTKGALTEQHERVHRL 382
Cdd:pfam12128 655 -LRRLFDEKQSEKDKKNKALA-----------ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQV 722
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 383 TEHVNAMRGLQSSKELKAELDGEKGRDSGEEAhDYEVDINGLEILECKYRVAVTEVIDLKAEIKA--------------L 448
Cdd:pfam12128 723 VEGALDAQLALLKAAIAARRSGAKAELKALET-WYKRDLASLGVDPDVIAKLKREIRTLERKIERiavrrqevlryfdwY 801
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2321695079 449 KEKYNKSVENYTDEKAKYESKIQMYDEQVTSLEKTTKESGEKMAHMEKELQKMTSIANENHSTLNTAQDELVTFSE 524
Cdd:pfam12128 802 QETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKE 877
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
4-231 |
7.08e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 7.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 4 EEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDE--------LEAEYDSLKQELEQLKEAFGQ 75
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEdaeerlakLEAEIDKLLAEIEELEREIEE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2321695079 76 SFSIHRKVAE---DGETREETLLQESASKEAyylgkilemqnELKQSRAVVTNVQAENERLTAVVQDLKENNEMVELQRI 152
Cdd:TIGR02169 348 ERKRRDKLTEeyaELKEELEDLRAELEEVDK-----------EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2321695079 153 RMKDEIREYKFREARLLQDYTELEEENITLQKLVSTLKQNQFYESSLSCLIQVEYEGLKHEIKRFEEETVLLNSQLEDA 231
Cdd:TIGR02169 417 RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| |
