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Conserved domains on  [gi|2180935979|ref|NP_001387002|]
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large ribosomal subunit protein bL34m isoform a [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
50-91 1.42e-12

Ribosomal protein L34;


:

Pssm-ID: 425699  Cd Length: 42  Bit Score: 56.24  E-value: 1.42e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 2180935979 50 GNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
50-91 1.42e-12

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 56.24  E-value: 1.42e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 2180935979 50 GNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 53-91 7.73e-10

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 49.32  E-value: 7.73e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 2180935979 53 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
Cdd:COG0230    5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 53-91 7.19e-06

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 39.42  E-value: 7.19e-06
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 2180935979 53 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
Cdd:TIGR01030  5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
50-91 1.42e-12

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 56.24  E-value: 1.42e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 2180935979 50 GNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 53-91 7.73e-10

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 49.32  E-value: 7.73e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 2180935979 53 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
Cdd:COG0230    5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 53-91 7.19e-06

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 39.42  E-value: 7.19e-06
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 2180935979 53 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
Cdd:TIGR01030  5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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