NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1770726351|ref|NP_001362469|]
View 

microtubule-associated protein 2 isoform 35 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MAP2_projctn super family cl25763
MAP2/Tau projection domain; This domain is found in the MAP2/Tau family of proteins which ...
 150-261 4.76e-65

MAP2/Tau projection domain; This domain is found in the MAP2/Tau family of proteins which includes MAP2, MAP4, Tau, and their homologs. All isoforms contain a conserved C-terminal domain containing tubulin-binding repeats (pfam00418), and a N-terminal projection domain of varying size. This domain has a net negative charge and exerts a long-range repulsive force. This provides a mechanism that can regulate microtubule spacing which might facilitate efficient organelle transport.


The actual alignment was detected with superfamily member pfam08377:

Pssm-ID: 429957 [Multi-domain]  Cd Length: 1134  Bit Score: 230.70  E-value: 4.76e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351  150 EDDDRSIMTEQLETIPKEEKAEKEARRSSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKK-VYKKAELAK 228
Cdd:pfam08377 1022 QDDDRSIMTEQLETIPKEEKAEKEARRPSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKaVYKKAELAK 1101

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1770726351  229 KTEVQAHSPSRKFILKPAIKYTRPTHLSCVKRK 261
Cdd:pfam08377 1102 KTEVQAHSPSRKFILKPAIKYTRPTHLSCVKRK 1134
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 448-477 7.92e-12

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 59.73  E-value: 7.92e-12
                          10        20        30
                  ....*....|....*....|....*....|
gi 1770726351 448 VQIVTKKIDLSHVTSKCGSLKNIRHRPGGG 477
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 479-509 2.77e-11

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 58.19  E-value: 2.77e-11
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1770726351 479 VKIESVKLDFKeKAQAKVGSLDNAHHVPGGG 509
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 417-446 3.20e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


:

Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 46.64  E-value: 3.20e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1770726351 417 RLINQPLpDLKNVKSKIGSTDNIKYQPKGG 446
Cdd:pfam00418   2 KIESKKL-DFSKVQSKCGSKDNIKHKPGGG 30
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
 205-444 1.01e-04

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 45.45  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 205 KEPSTVSRD--EVRRKKVYKKAELAKKT-EVQAHSPSRKFIL--KPAIKyTRPTHLSCVKRKTTAAGGESALAPSVFKQA 279
Cdd:PTZ00449  534 HEDSKESDEpkEGGKPGETKEGEVGKKPgPAKEHKPSKIPTLskKPEFP-KDPKHPKDPEEPKKPKRPRSAQRPTRPKSP 612

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 280 KDKVSDGVTKSPEKRSSLPRPSSILPPRRGVSGDRDENSFSLNSSISSSA------------------RRTTRS-EPIRR 340
Cdd:PTZ00449  613 KLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSpkppfdpkfkekfyddylDAAAKSkETKTT 692

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 341 AGKSGTSTPTTPGSTAITPGTPPSYSSRTPgtPGTPSYPRTPHTP-GTPKSAILVPSEkkvaiIRTPPKSPATPKQLRLI 419
Cdd:PTZ00449  693 VVLDESFESILKETLPETPGTPFTTPRPLP--PKLPRDEEFPFEPiGDPDAEQPDDIE-----FFTPPEEERTFFHETPA 765

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1770726351 420 NQPLPDL-------KNVKSKIGSTDNIKYQPK 444
Cdd:PTZ00449  766 DTPLPDIlaeefkeEDIHAETGEPDEAMKRPD 797
 
Name Accession Description Interval E-value
MAP2_projctn pfam08377
MAP2/Tau projection domain; This domain is found in the MAP2/Tau family of proteins which ...
 150-261 4.76e-65

MAP2/Tau projection domain; This domain is found in the MAP2/Tau family of proteins which includes MAP2, MAP4, Tau, and their homologs. All isoforms contain a conserved C-terminal domain containing tubulin-binding repeats (pfam00418), and a N-terminal projection domain of varying size. This domain has a net negative charge and exerts a long-range repulsive force. This provides a mechanism that can regulate microtubule spacing which might facilitate efficient organelle transport.


Pssm-ID: 429957 [Multi-domain]  Cd Length: 1134  Bit Score: 230.70  E-value: 4.76e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351  150 EDDDRSIMTEQLETIPKEEKAEKEARRSSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKK-VYKKAELAK 228
Cdd:pfam08377 1022 QDDDRSIMTEQLETIPKEEKAEKEARRPSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKaVYKKAELAK 1101

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1770726351  229 KTEVQAHSPSRKFILKPAIKYTRPTHLSCVKRK 261
Cdd:pfam08377 1102 KTEVQAHSPSRKFILKPAIKYTRPTHLSCVKRK 1134
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 448-477 7.92e-12

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 59.73  E-value: 7.92e-12
                          10        20        30
                  ....*....|....*....|....*....|
gi 1770726351 448 VQIVTKKIDLSHVTSKCGSLKNIRHRPGGG 477
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 479-509 2.77e-11

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 58.19  E-value: 2.77e-11
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1770726351 479 VKIESVKLDFKeKAQAKVGSLDNAHHVPGGG 509
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 417-446 3.20e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 46.64  E-value: 3.20e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1770726351 417 RLINQPLpDLKNVKSKIGSTDNIKYQPKGG 446
Cdd:pfam00418   2 KIESKKL-DFSKVQSKCGSKDNIKHKPGGG 30
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 205-444 1.01e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 45.45  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 205 KEPSTVSRD--EVRRKKVYKKAELAKKT-EVQAHSPSRKFIL--KPAIKyTRPTHLSCVKRKTTAAGGESALAPSVFKQA 279
Cdd:PTZ00449  534 HEDSKESDEpkEGGKPGETKEGEVGKKPgPAKEHKPSKIPTLskKPEFP-KDPKHPKDPEEPKKPKRPRSAQRPTRPKSP 612

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 280 KDKVSDGVTKSPEKRSSLPRPSSILPPRRGVSGDRDENSFSLNSSISSSA------------------RRTTRS-EPIRR 340
Cdd:PTZ00449  613 KLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSpkppfdpkfkekfyddylDAAAKSkETKTT 692

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 341 AGKSGTSTPTTPGSTAITPGTPPSYSSRTPgtPGTPSYPRTPHTP-GTPKSAILVPSEkkvaiIRTPPKSPATPKQLRLI 419
Cdd:PTZ00449  693 VVLDESFESILKETLPETPGTPFTTPRPLP--PKLPRDEEFPFEPiGDPDAEQPDDIE-----FFTPPEEERTFFHETPA 765

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1770726351 420 NQPLPDL-------KNVKSKIGSTDNIKYQPK 444
Cdd:PTZ00449  766 DTPLPDIlaeefkeEDIHAETGEPDEAMKRPD 797
 
Name Accession Description Interval E-value
MAP2_projctn pfam08377
MAP2/Tau projection domain; This domain is found in the MAP2/Tau family of proteins which ...
 150-261 4.76e-65

MAP2/Tau projection domain; This domain is found in the MAP2/Tau family of proteins which includes MAP2, MAP4, Tau, and their homologs. All isoforms contain a conserved C-terminal domain containing tubulin-binding repeats (pfam00418), and a N-terminal projection domain of varying size. This domain has a net negative charge and exerts a long-range repulsive force. This provides a mechanism that can regulate microtubule spacing which might facilitate efficient organelle transport.


Pssm-ID: 429957 [Multi-domain]  Cd Length: 1134  Bit Score: 230.70  E-value: 4.76e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351  150 EDDDRSIMTEQLETIPKEEKAEKEARRSSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKK-VYKKAELAK 228
Cdd:pfam08377 1022 QDDDRSIMTEQLETIPKEEKAEKEARRPSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKaVYKKAELAK 1101

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1770726351  229 KTEVQAHSPSRKFILKPAIKYTRPTHLSCVKRK 261
Cdd:pfam08377 1102 KTEVQAHSPSRKFILKPAIKYTRPTHLSCVKRK 1134
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 448-477 7.92e-12

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 59.73  E-value: 7.92e-12
                          10        20        30
                  ....*....|....*....|....*....|
gi 1770726351 448 VQIVTKKIDLSHVTSKCGSLKNIRHRPGGG 477
Cdd:pfam00418   1 VKIESKKLDFSKVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 479-509 2.77e-11

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 58.19  E-value: 2.77e-11
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1770726351 479 VKIESVKLDFKeKAQAKVGSLDNAHHVPGGG 509
Cdd:pfam00418   1 VKIESKKLDFS-KVQSKCGSKDNIKHKPGGG 30
Tubulin-binding pfam00418
Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, ...
 417-446 3.20e-07

Tau and MAP protein, tubulin-binding repeat; This family includes the vertebrate proteins MAP2, MAP4 and Tau, as well as other animal homologs. MAP4 is present in many tissues but is usually absent from neurons; MAP2 and Tau are mainly neuronal. Members of this family have the ability to bind to and stabilize microtubules. As a result, they are involved in neuronal migration, supporting dendrite elongation, and regulating microtubules during mitotic metaphase. Note that Tau is involved in neurofibrillary tangle formation in Alzheimer's disease and some other dementias. This family features a C-terminal microtubule binding repeat that contains a conserved KXGS motif.


Pssm-ID: 459807 [Multi-domain]  Cd Length: 30  Bit Score: 46.64  E-value: 3.20e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1770726351 417 RLINQPLpDLKNVKSKIGSTDNIKYQPKGG 446
Cdd:pfam00418   2 KIESKKL-DFSKVQSKCGSKDNIKHKPGGG 30
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 205-444 1.01e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 45.45  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 205 KEPSTVSRD--EVRRKKVYKKAELAKKT-EVQAHSPSRKFIL--KPAIKyTRPTHLSCVKRKTTAAGGESALAPSVFKQA 279
Cdd:PTZ00449  534 HEDSKESDEpkEGGKPGETKEGEVGKKPgPAKEHKPSKIPTLskKPEFP-KDPKHPKDPEEPKKPKRPRSAQRPTRPKSP 612

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 280 KDKVSDGVTKSPEKRSSLPRPSSILPPRRGVSGDRDENSFSLNSSISSSA------------------RRTTRS-EPIRR 340
Cdd:PTZ00449  613 KLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSpkppfdpkfkekfyddylDAAAKSkETKTT 692

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1770726351 341 AGKSGTSTPTTPGSTAITPGTPPSYSSRTPgtPGTPSYPRTPHTP-GTPKSAILVPSEkkvaiIRTPPKSPATPKQLRLI 419
Cdd:PTZ00449  693 VVLDESFESILKETLPETPGTPFTTPRPLP--PKLPRDEEFPFEPiGDPDAEQPDDIE-----FFTPPEEERTFFHETPA 765

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1770726351 420 NQPLPDL-------KNVKSKIGSTDNIKYQPK 444
Cdd:PTZ00449  766 DTPLPDIlaeefkeEDIHAETGEPDEAMKRPD 797
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH