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Conserved domains on  [gi|1552482258|ref|NP_001355018|]
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epididymal-specific lipocalin-10 isoform 2 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
lipocalin_10-like cd19425
Epididymal-specific lipocalin-10 and similar proteins; Epididymal-specific lipocalin-10 (LCN10) ...
36-148 1.50e-66

Epididymal-specific lipocalin-10 and similar proteins; Epididymal-specific lipocalin-10 (LCN10) may play a role in male fertility, and may act as a retinoid carrier protein within the epididymis. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which has a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


:

Pssm-ID: 381200  Cd Length: 111  Bit Score: 199.03  E-value: 1.50e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  36 NWNKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGRAQPRHPGTSGHLWASLsvKGVKA 115
Cdd:cd19425     1 NWSKFSGFWYILATATDAQGFLPARDKRKLGASVVKVHKVGQLRVVLAFRRGQGCGRAQLKKPGTSGHLWASL--KGVKG 78
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1552482258 116 FHVLSTDYSYGLVYLRLGRATQNYKNLLLFHRQ 148
Cdd:cd19425    79 FHVLSTDYSYGLVYLRLGRATQNYKNLLLFHRQ 111
 
Name Accession Description Interval E-value
lipocalin_10-like cd19425
Epididymal-specific lipocalin-10 and similar proteins; Epididymal-specific lipocalin-10 (LCN10) ...
36-148 1.50e-66

Epididymal-specific lipocalin-10 and similar proteins; Epididymal-specific lipocalin-10 (LCN10) may play a role in male fertility, and may act as a retinoid carrier protein within the epididymis. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which has a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381200  Cd Length: 111  Bit Score: 199.03  E-value: 1.50e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  36 NWNKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGRAQPRHPGTSGHLWASLsvKGVKA 115
Cdd:cd19425     1 NWSKFSGFWYILATATDAQGFLPARDKRKLGASVVKVHKVGQLRVVLAFRRGQGCGRAQLKKPGTSGHLWASL--KGVKG 78
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1552482258 116 FHVLSTDYSYGLVYLRLGRATQNYKNLLLFHRQ 148
Cdd:cd19425    79 FHVLSTDYSYGLVYLRLGRATQNYKNLLLFHRQ 111
 
Name Accession Description Interval E-value
lipocalin_10-like cd19425
Epididymal-specific lipocalin-10 and similar proteins; Epididymal-specific lipocalin-10 (LCN10) ...
36-148 1.50e-66

Epididymal-specific lipocalin-10 and similar proteins; Epididymal-specific lipocalin-10 (LCN10) may play a role in male fertility, and may act as a retinoid carrier protein within the epididymis. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which has a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381200  Cd Length: 111  Bit Score: 199.03  E-value: 1.50e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  36 NWNKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGRAQPRHPGTSGHLWASLsvKGVKA 115
Cdd:cd19425     1 NWSKFSGFWYILATATDAQGFLPARDKRKLGASVVKVHKVGQLRVVLAFRRGQGCGRAQLKKPGTSGHLWASL--KGVKG 78
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1552482258 116 FHVLSTDYSYGLVYLRLGRATQNYKNLLLFHRQ 148
Cdd:cd19425    79 FHVLSTDYSYGLVYLRLGRATQNYKNLLLFHRQ 111
lipocalin_FABP cd00301
lipocalin/cytosolic fatty acid-binding protein family; Lipocalins are diverse, mainly low ...
39-147 3.36e-12

lipocalin/cytosolic fatty acid-binding protein family; Lipocalins are diverse, mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules as well as membrane bound-receptors. They have a large beta-barrel ligand-binding cavity. Members include retinol-binding protein, retinoic acid-binding protein, complement protein C8 gamma, Can f 2, apolipoprotein D, extracellular fatty acid-binding protein, beta-lactoglobulin, oderant-binding protein, and bacterial lipocalin Blc. Lipocalins are involved in many important processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty acid-binding proteins also bind hydrophobic ligands in a non-covalent, reversible manner, and are involved in protection and shuttling of fatty acids within the cell, and in acquisition and removal of fatty acids from intracellular sites.


Pssm-ID: 381182  Cd Length: 109  Bit Score: 60.25  E-value: 3.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  39 KFSGFWYILATATDAqgflPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGRAQP--RHPGTSGHLWASLSVKGVKA- 115
Cdd:cd00301     1 KFSGKWYEVASASNA----PEEDEGKCTTAEYTLEGNGNLKVTNSFVRDGVCKSITGtlKKTDGPGKFTVTYPGYTGKNe 76
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1552482258 116 FHVLSTDY-SYGLVYLRLGRATQNYKNLLLFHR 147
Cdd:cd00301    77 LYVLSTDYdNYAIVYSCKNLDGGHTVVAWLLSR 109
lipocalin_15-like cd19422
lipocalin 15 and similar proteins, such as chicken CALbeta; This subfamily includes ...
39-177 2.97e-11

lipocalin 15 and similar proteins, such as chicken CALbeta; This subfamily includes uncharacterized human lipocalin 15, and chicken chondrogenesis-associated lipocalin (CAL) beta which is associated with chondrogenesis and inflammation. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381197  Cd Length: 143  Bit Score: 58.33  E-value: 2.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  39 KFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGR--AQPRHPGTSGHLWAslSVKGVKAF 116
Cdd:cd19422     1 KFAGLWHVMAMASDCPVFLGMKDHMTSSTTAIRPTPEGDLTMHTEFPLPDGCKQieAEFQKSGQAGHFRV--PELGKRDL 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1552482258 117 HVLSTDYS-YGLVYLRLGRATQNYKNLLLFHRQNVSSFQSLKEFMDACDILGLSK-AAVILPK 177
Cdd:cd19422    79 RVMDTDYSsYAILYIYKELEGESSTMVQLYTRNQDVSPQLLQKFKELYPTLGLTEdMMVILPK 141
lipocalin_L-PGDS cd19419
lipocalin-type prostaglandin D synthase; Lipocalin-type prostaglandin D synthase (L-PGDS; EC:5. ...
38-177 4.51e-09

lipocalin-type prostaglandin D synthase; Lipocalin-type prostaglandin D synthase (L-PGDS; EC:5.3.99.2) is a secreted enzyme and the second most abundant protein in human cerebrospinal fluid. L-PGDS acts as both, an enzyme and as a lipid transporter, converting prostaglandin H2 to prostaglandin D2 and serving as a carrier for hydrophobic ligands including retinoids, hemoglobin metabolites, thyroid hormones, gangliosides, and fatty acids. L-PGDS belongs to the lipocalin/cytosolic fatty-acid binding protein family which has a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381194  Cd Length: 158  Bit Score: 52.74  E-value: 4.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  38 NKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGR----AQPrhPGTSGHL------WAS 107
Cdd:cd19419     8 DKFAGRWYSVGLASNSNWFVEKKAKLKMCTTVVAPTTDGNLNLTMTFLKKNGCETrtylYEK--TEQPGRFtyksprWGS 85
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1552482258 108 lsvkgVKAFHVLSTDYS-YGLVYLRLGRATQNYKNLLLFHRQNVSSFQSLKEFMDACDILGLSKAA-VILPK 177
Cdd:cd19419    86 -----DHDVRVVETNYDeYALVHTIKTKGNEEFTMVTLYSRTQTLRPELKEKFRQFAKAQGFTEENiVTLPQ 152
lipocalin_Ex-FABP-like cd19439
extracellular fatty acid-binding protein; Ex-FABP (also known as siderocalin, lipocalin Q83 or ...
38-129 5.96e-07

extracellular fatty acid-binding protein; Ex-FABP (also known as siderocalin, lipocalin Q83 or protein Ch21) displays a dual ligand binding mode as it can bind siderophore and fatty acids simultaneously. ExFABP has a cavity which extends through the protein and has two separate ligand specificities, one for bacterial siderophores at one end, and other specifically binding co-purified lysophosphatidic acid (LPA), a potent cell signaling molecule, at the other end. As well as acting as an LPA "sensor", Ex-FABP is bacteriostatic, and tightly binds the 2,3-catechol-type ferric siderophores enterobactin, bacillibactin, and parabactin, associated with enteric bacteria and Gram-positive bacilli. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381214  Cd Length: 142  Bit Score: 46.89  E-value: 5.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  38 NKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGRAQPRHPGTSGHLWASLSVKGVKAFH 117
Cdd:cd19439     2 SELAGKWYLVALASNTDFFLREKGKMKMMMARISFLGEDELLVSYAFPSPGGCRKWETTFKKTSDDGEVYYSEEARKTVE 81
                          90
                  ....*....|...
gi 1552482258 118 VLSTDY-SYGLVY 129
Cdd:cd19439    82 VLDTDYkSYAVIY 94
lipocalin_6 cd19426
Epididymal-specific lipocalin-6; Epididymal-specific lipocalin-6 (LCN6) may play a role in ...
42-159 1.55e-06

Epididymal-specific lipocalin-6; Epididymal-specific lipocalin-6 (LCN6) may play a role in male fertility. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which has a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381201  Cd Length: 144  Bit Score: 45.76  E-value: 1.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  42 GFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRGQGCGRAQPRH-PGTSGHLWASLSVkGVKAFHVLS 120
Cdd:cd19426    14 GPWYVLAVASREKSFAVEKDMKNVAGVVVTLTPENNLRVLSSQHGLGGCSQSVTELlKRNSGWVFENPSI-GVLELRVLG 92
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1552482258 121 TDY-SYGLVYLRLGRATQNYKNLLLFHRQNVSSFQSLKEF 159
Cdd:cd19426    93 TNFrDYAIVFTQLEFGDEPFNTVELYSRTETASQEAMGLF 132
lipocalin_5_8-like cd19421
lipocalin similar to human epididymal-specific lipocalin-8, mouse lipocalin-5 and -8, and ...
34-147 2.08e-06

lipocalin similar to human epididymal-specific lipocalin-8, mouse lipocalin-5 and -8, and similar proteins; Lipocalin 5 (LCN5; also known as epididymal retinoic acid binding protein Erabp, mouse epididymal protein 10, MEP10, and E-RABP) and Lipocalin 8 (LCN8; also known as mouse epididymal protein 17, MEP17) are homologous proteins belonging to the epididymis-specific lipocalins; they may play a role in male fertility, and may act as retinoid carrier proteins within the epididymis. In mice, genes encoding the two proteins are contiguous; in humans, there is one gene LCN8 (which has been previously called LCN5). This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381196  Cd Length: 150  Bit Score: 45.29  E-value: 2.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1552482258  34 ALNWNKFSGFWYILATATDaQGfLPARDKRKLGASVVKVnKVGQLRVLLAFRRGQGCgrAQPRHPGTSGHLWASLSVKGV 113
Cdd:cd19421     4 DLDISKILGFWYEVAVASD-QG-LVLHAEERVEGLFLTL-SGNNLTVKTTYNSSGSC--VLEKVTGSEGDGPGKFAFPGK 78
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1552482258 114 KAFHVLSTDY-SYGLVYLRLGRATQNYKNLLLFHR 147
Cdd:cd19421    79 REIHVLDTDYeTYAILDITLLWAGRNFRVLKYFTR 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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