|
Name |
Accession |
Description |
Interval |
E-value |
| LARP_1 |
cd08037 |
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related ... |
301-373 |
2.84e-45 |
|
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
:
Pssm-ID: 153406 Cd Length: 73 Bit Score: 156.99 E-value: 2.84e-45
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRR 373
Cdd:cd08037 1 KDYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKIRR 73
|
|
| DM15 |
smart00684 |
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
823-861 |
2.34e-15 |
|
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;
:
Pssm-ID: 128927 Cd Length: 39 Bit Score: 70.48 E-value: 2.34e-15
10 20 30
....*....|....*....|....*....|....*....
gi 1534861472 823 HFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEK 861
Cdd:smart00684 1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
|
|
| DM15 |
smart00684 |
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
782-822 |
2.81e-11 |
|
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;
:
Pssm-ID: 128927 Cd Length: 39 Bit Score: 58.92 E-value: 2.81e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1534861472 782 FTQHVYHKYRRRCLNERKRLGigqSQEMNTLFRFWSFFLRD 822
Cdd:smart00684 2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39
|
|
| LHP1 super family |
cl34938 |
La protein, small RNA-binding pol III transcript stabilizing protein and related ... |
100-452 |
3.41e-09 |
|
La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis];
The actual alignment was detected with superfamily member COG5193:
Pssm-ID: 227520 [Multi-domain] Cd Length: 438 Bit Score: 60.44 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 100 PTPGEIAHKSVQPQ---SHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKW 175
Cdd:COG5193 67 KLTSNTKWTLKQVEfyfSGSKDTDSNFPKDKFLKTTaPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 176 VPLQIDMKPEVPREKLASRPTRPPEPRHipaNRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDgaaH 255
Cdd:COG5193 147 LEVSSSGSNKNRTEKLISNNNKSTSQMQ---RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRD---W 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 256 FDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVS----STELYSVDQELLK-DYIKRQIEYYFSVDNLERDFFLRRKMDAD 330
Cdd:COG5193 221 LNKNFRGSVFVEFKYFREAQRFNNGFYRNKKYPndpeTVYYYSVEPILLSiMAKKEQIEYYFSEENLKSDEFLRKKFKKA 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 331 GFLPITLIASFHRVQALTTDISLIFAALKdskvvEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQL----LNCPEFVPRQ 406
Cdd:COG5193 301 GFIPLSFIGKFYRNLSFGGDKNLILAAMK-----EVVQNKATNHLEIALGSIEDAQKNEAKDFSPGkkyfIRKKEWSEWL 375
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1534861472 407 HYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSE 452
Cdd:COG5193 376 MESNFSEIADEKEKAKIEKLLGPNSLDPYSYMGYPNFFPSNENGKK 421
|
|
| PRK13335 super family |
cl31400 |
superantigen-like protein SSL3; Reviewed; |
34-147 |
8.48e-04 |
|
superantigen-like protein SSL3; Reviewed;
The actual alignment was detected with superfamily member PRK13335:
Pssm-ID: 139494 [Multi-domain] Cd Length: 356 Bit Score: 42.81 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 34 GRKNSVALAAAPRKEPTGDREKplpfpvlAPFSNPEHSAPAKVVRAAVPKQRKGSKVgdfgdAINWPTPGEIAHKSVQPQ 113
Cdd:PRK13335 57 GANSATTQAANTRQERTPKLEK-------APNTNEEKTSASKIEKISQPKQEEQKSL-----NISATPAPKQEQSQTTTE 124
|
90 100 110
....*....|....*....|....*....|....
gi 1534861472 114 SHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTK 147
Cdd:PRK13335 125 STTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIK 158
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LARP_1 |
cd08037 |
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related ... |
301-373 |
2.84e-45 |
|
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153406 Cd Length: 73 Bit Score: 156.99 E-value: 2.84e-45
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRR 373
Cdd:cd08037 1 KDYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKIRR 73
|
|
| LA |
smart00715 |
Domain in the RNA-binding Lupus La protein; unknown function; |
298-374 |
2.72e-34 |
|
Domain in the RNA-binding Lupus La protein; unknown function;
Pssm-ID: 128955 [Multi-domain] Cd Length: 80 Bit Score: 125.81 E-value: 2.72e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 298 ELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA-DGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVRRR 374
Cdd:smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKnDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEdgLKVRRR 80
|
|
| La |
pfam05383 |
La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well ... |
304-360 |
4.53e-25 |
|
La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well as other proteins. The function of this region is uncertain.
Pssm-ID: 461635 Cd Length: 59 Bit Score: 98.65 E-value: 4.53e-25
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1534861472 304 IKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTTDISLIFAALKD 360
Cdd:pfam05383 1 IKKQVEYYFSDENLPKDKFLRKQMDKdpDGYVPISVIASFKRMKKLTTDIDLIAEALRE 59
|
|
| DM15 |
smart00684 |
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
823-861 |
2.34e-15 |
|
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;
Pssm-ID: 128927 Cd Length: 39 Bit Score: 70.48 E-value: 2.34e-15
10 20 30
....*....|....*....|....*....|....*....
gi 1534861472 823 HFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEK 861
Cdd:smart00684 1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
|
|
| DM15 |
smart00684 |
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
782-822 |
2.81e-11 |
|
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;
Pssm-ID: 128927 Cd Length: 39 Bit Score: 58.92 E-value: 2.81e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1534861472 782 FTQHVYHKYRRRCLNERKRLGigqSQEMNTLFRFWSFFLRD 822
Cdd:smart00684 2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39
|
|
| LHP1 |
COG5193 |
La protein, small RNA-binding pol III transcript stabilizing protein and related ... |
100-452 |
3.41e-09 |
|
La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis];
Pssm-ID: 227520 [Multi-domain] Cd Length: 438 Bit Score: 60.44 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 100 PTPGEIAHKSVQPQ---SHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKW 175
Cdd:COG5193 67 KLTSNTKWTLKQVEfyfSGSKDTDSNFPKDKFLKTTaPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 176 VPLQIDMKPEVPREKLASRPTRPPEPRHipaNRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDgaaH 255
Cdd:COG5193 147 LEVSSSGSNKNRTEKLISNNNKSTSQMQ---RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRD---W 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 256 FDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVS----STELYSVDQELLK-DYIKRQIEYYFSVDNLERDFFLRRKMDAD 330
Cdd:COG5193 221 LNKNFRGSVFVEFKYFREAQRFNNGFYRNKKYPndpeTVYYYSVEPILLSiMAKKEQIEYYFSEENLKSDEFLRKKFKKA 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 331 GFLPITLIASFHRVQALTTDISLIFAALKdskvvEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQL----LNCPEFVPRQ 406
Cdd:COG5193 301 GFIPLSFIGKFYRNLSFGGDKNLILAAMK-----EVVQNKATNHLEIALGSIEDAQKNEAKDFSPGkkyfIRKKEWSEWL 375
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1534861472 407 HYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSE 452
Cdd:COG5193 376 MESNFSEIADEKEKAKIEKLLGPNSLDPYSYMGYPNFFPSNENGKK 421
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
11-251 |
3.49e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 11 PPFPHPELDFQEAPIPSCPgRLPGRKNSVALAAAPRKEPTGDREKPL------------PFPVLAPFSNPEHSAPAKVVR 78
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVlapaaalppaasPAGPLPPPTSAQPTAPPPPPG 2844
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 79 AAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQP--------------QSHKPQPTRKLPPKKDMKEQEKGEGSDSKESP 144
Cdd:PHA03247 2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAParppvrrlarpavsRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 145 KTKSDESGEEKNG--------DEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLAS-RPTRP------PEPRHIPANRG 209
Cdd:PHA03247 2925 PPPQPQPPPPPPPrpqpplapTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQpAPSREapasstPPLTGHSLSRV 3004
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1534861472 210 EIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSD 251
Cdd:PHA03247 3005 SSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSD 3046
|
|
| PRK13335 |
PRK13335 |
superantigen-like protein SSL3; Reviewed; |
34-147 |
8.48e-04 |
|
superantigen-like protein SSL3; Reviewed;
Pssm-ID: 139494 [Multi-domain] Cd Length: 356 Bit Score: 42.81 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 34 GRKNSVALAAAPRKEPTGDREKplpfpvlAPFSNPEHSAPAKVVRAAVPKQRKGSKVgdfgdAINWPTPGEIAHKSVQPQ 113
Cdd:PRK13335 57 GANSATTQAANTRQERTPKLEK-------APNTNEEKTSASKIEKISQPKQEEQKSL-----NISATPAPKQEQSQTTTE 124
|
90 100 110
....*....|....*....|....*....|....
gi 1534861472 114 SHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTK 147
Cdd:PRK13335 125 STTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIK 158
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LARP_1 |
cd08037 |
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related ... |
301-373 |
2.84e-45 |
|
La RNA-binding domain of La-related protein 1; This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153406 Cd Length: 73 Bit Score: 156.99 E-value: 2.84e-45
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRR 373
Cdd:cd08037 1 KDYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKIRR 73
|
|
| LARP_1_2 |
cd08034 |
La RNA-binding domain proteins similar to La-related proteins 1 and 2; This domain is found in ... |
301-373 |
4.86e-44 |
|
La RNA-binding domain proteins similar to La-related proteins 1 and 2; This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153403 Cd Length: 73 Bit Score: 153.35 E-value: 4.86e-44
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRR 373
Cdd:cd08034 1 KEYIKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVDEKVRC 73
|
|
| LARP_2 |
cd08038 |
La RNA-binding domain of La-related protein 2; This domain is found in vertebrate La-related ... |
301-373 |
3.17e-36 |
|
La RNA-binding domain of La-related protein 2; This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153407 Cd Length: 73 Bit Score: 131.23 E-value: 3.17e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRR 373
Cdd:cd08038 1 KEYIKRQIEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQKIRR 73
|
|
| LA |
smart00715 |
Domain in the RNA-binding Lupus La protein; unknown function; |
298-374 |
2.72e-34 |
|
Domain in the RNA-binding Lupus La protein; unknown function;
Pssm-ID: 128955 [Multi-domain] Cd Length: 80 Bit Score: 125.81 E-value: 2.72e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 298 ELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA-DGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVRRR 374
Cdd:smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKnDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEdgLKVRRR 80
|
|
| LAM |
cd07323 |
LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins ... |
301-373 |
2.73e-32 |
|
LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153396 Cd Length: 75 Bit Score: 119.94 E-value: 2.73e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVRR 373
Cdd:cd07323 1 LEKIKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEdgTKVRR 75
|
|
| La |
pfam05383 |
La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well ... |
304-360 |
4.53e-25 |
|
La domain; This presumed domain is found at the N-terminus of La RNA-binding proteins as well as other proteins. The function of this region is uncertain.
Pssm-ID: 461635 Cd Length: 59 Bit Score: 98.65 E-value: 4.53e-25
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1534861472 304 IKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTTDISLIFAALKD 360
Cdd:pfam05383 1 IKKQVEYYFSDENLPKDKFLRKQMDKdpDGYVPISVIASFKRMKKLTTDIDLIAEALRE 59
|
|
| LARP_4_5_like |
cd08031 |
La RNA-binding domain of proteins similar to La-related proteins 4 and 5; This domain is found ... |
301-372 |
2.19e-19 |
|
La RNA-binding domain of proteins similar to La-related proteins 4 and 5; This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153400 Cd Length: 75 Bit Score: 83.26 E-value: 2.19e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR 372
Cdd:cd08031 1 KELLKRQLEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEkgEKVR 74
|
|
| LARP_6 |
cd08033 |
La RNA-binding domain of La-related protein 6; This domain is found in animal and plant ... |
301-373 |
2.60e-18 |
|
La RNA-binding domain of La-related protein 6; This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153402 Cd Length: 77 Bit Score: 80.02 E-value: 2.60e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKM--DADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE--KVRR 373
Cdd:cd08033 1 IQKIVKQVEYYFSDENLLKDAFLLKHVrrNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDgkKVRR 77
|
|
| DM15 |
smart00684 |
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
823-861 |
2.34e-15 |
|
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;
Pssm-ID: 128927 Cd Length: 39 Bit Score: 70.48 E-value: 2.34e-15
10 20 30
....*....|....*....|....*....|....*....
gi 1534861472 823 HFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEK 861
Cdd:smart00684 1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
|
|
| LARP_7 |
cd08032 |
La RNA-binding domain of La-related protein 7; LARP7 is a component of the 7SK snRNP, a key ... |
297-374 |
1.30e-14 |
|
La RNA-binding domain of La-related protein 7; LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Pssm-ID: 153401 Cd Length: 82 Bit Score: 69.97 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 297 QELLKDyIKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRR 374
Cdd:cd08032 3 KQLLAD-IAKQVDFWFGDVNLHKDRFLREQIEKsrDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIR 81
|
|
| LARP_3 |
cd08028 |
La RNA-binding domain of La-related protein 3; This domain is found at the N-terminus of the ... |
300-373 |
1.78e-14 |
|
La RNA-binding domain of La-related protein 3; This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Pssm-ID: 153397 Cd Length: 82 Bit Score: 69.25 E-value: 1.78e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1534861472 300 LKDYIKRQIEYYFSVDNLERDFFLRRKM-DADGFLPITLIASFHRVQALTTDISLIFAALKDSK--VVEIVDE--KVRR 373
Cdd:cd08028 4 LEKKIIRQIEYYFGDFNLPRDKFLKEQIkEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKsgLIEVSEDktKIRR 82
|
|
| LARP_4 |
cd08035 |
La RNA-binding domain of La-related protein 4; This domain is found in vertebrate La-related ... |
301-372 |
2.97e-14 |
|
La RNA-binding domain of La-related protein 4; This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153404 Cd Length: 75 Bit Score: 68.53 E-value: 2.97e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR 372
Cdd:cd08035 1 RECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDEtgEKVR 74
|
|
| DM15 |
smart00684 |
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ... |
782-822 |
2.81e-11 |
|
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;
Pssm-ID: 128927 Cd Length: 39 Bit Score: 58.92 E-value: 2.81e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1534861472 782 FTQHVYHKYRRRCLNERKRLGigqSQEMNTLFRFWSFFLRD 822
Cdd:smart00684 2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39
|
|
| LA_like_fungal |
cd08029 |
La-motif domain of fungal proteins similar to the La autoantigen; This domain is found in ... |
301-373 |
3.07e-11 |
|
La-motif domain of fungal proteins similar to the La autoantigen; This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153398 Cd Length: 76 Bit Score: 60.01 E-value: 3.07e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKM--DADGFLPITLIASFHRVQALtTDISLIFAALKDSKVVEIVD--EKVRR 373
Cdd:cd08029 1 PEEIRKQVEFYFSDSNLPTDKFLWTLTggSNNGWVPIKTIASFKRMRRF-QPLEAVVEALRESELLEVSEdgENVRR 76
|
|
| LHP1 |
COG5193 |
La protein, small RNA-binding pol III transcript stabilizing protein and related ... |
100-452 |
3.41e-09 |
|
La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis];
Pssm-ID: 227520 [Multi-domain] Cd Length: 438 Bit Score: 60.44 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 100 PTPGEIAHKSVQPQ---SHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKW 175
Cdd:COG5193 67 KLTSNTKWTLKQVEfyfSGSKDTDSNFPKDKFLKTTaPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARV 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 176 VPLQIDMKPEVPREKLASRPTRPPEPRHipaNRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDgaaH 255
Cdd:COG5193 147 LEVSSSGSNKNRTEKLISNNNKSTSQMQ---RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRD---W 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 256 FDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVS----STELYSVDQELLK-DYIKRQIEYYFSVDNLERDFFLRRKMDAD 330
Cdd:COG5193 221 LNKNFRGSVFVEFKYFREAQRFNNGFYRNKKYPndpeTVYYYSVEPILLSiMAKKEQIEYYFSEENLKSDEFLRKKFKKA 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 331 GFLPITLIASFHRVQALTTDISLIFAALKdskvvEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQL----LNCPEFVPRQ 406
Cdd:COG5193 301 GFIPLSFIGKFYRNLSFGGDKNLILAAMK-----EVVQNKATNHLEIALGSIEDAQKNEAKDFSPGkkyfIRKKEWSEWL 375
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1534861472 407 HYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSE 452
Cdd:COG5193 376 MESNFSEIADEKEKAKIEKLLGPNSLDPYSYMGYPNFFPSNENGKK 421
|
|
| LARP_5 |
cd08036 |
La RNA-binding domain of La-related protein 5; This domain is found in vertebrate La-related ... |
301-372 |
3.86e-09 |
|
La RNA-binding domain of La-related protein 5; This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153405 Cd Length: 75 Bit Score: 54.26 E-value: 3.86e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1534861472 301 KDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR 372
Cdd:cd08036 1 RELLKKTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEkgEKVR 74
|
|
| LA_like_plant |
cd08030 |
La-motif domain of plant proteins similar to the La autoantigen; This domain is found in plant ... |
304-373 |
2.52e-08 |
|
La-motif domain of plant proteins similar to the La autoantigen; This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Pssm-ID: 153399 Cd Length: 90 Bit Score: 52.39 E-value: 2.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 304 IKRQIEYYFSVDNLERDFFLRRKM--DADGFLPITLIASFHRVQAL-------TTDISL-----IFAALKDSKVVEIVDE 369
Cdd:cd08030 5 VLRQVEFYFSDSNLPRDDFLLEEVeeDPDGMVSLALICSFSRMRSLlglgggkPEDVPEdtlkaVAEALRTSTLLKVSED 84
|
....*.
gi 1534861472 370 --KVRR 373
Cdd:cd08030 85 gkRVGR 90
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
11-251 |
3.49e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 11 PPFPHPELDFQEAPIPSCPgRLPGRKNSVALAAAPRKEPTGDREKPL------------PFPVLAPFSNPEHSAPAKVVR 78
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVlapaaalppaasPAGPLPPPTSAQPTAPPPPPG 2844
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 79 AAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQP--------------QSHKPQPTRKLPPKKDMKEQEKGEGSDSKESP 144
Cdd:PHA03247 2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAParppvrrlarpavsRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 145 KTKSDESGEEKNG--------DEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLAS-RPTRP------PEPRHIPANRG 209
Cdd:PHA03247 2925 PPPQPQPPPPPPPrpqpplapTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQpAPSREapasstPPLTGHSLSRV 3004
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1534861472 210 EIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSD 251
Cdd:PHA03247 3005 SSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSD 3046
|
|
| PRK13335 |
PRK13335 |
superantigen-like protein SSL3; Reviewed; |
34-147 |
8.48e-04 |
|
superantigen-like protein SSL3; Reviewed;
Pssm-ID: 139494 [Multi-domain] Cd Length: 356 Bit Score: 42.81 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534861472 34 GRKNSVALAAAPRKEPTGDREKplpfpvlAPFSNPEHSAPAKVVRAAVPKQRKGSKVgdfgdAINWPTPGEIAHKSVQPQ 113
Cdd:PRK13335 57 GANSATTQAANTRQERTPKLEK-------APNTNEEKTSASKIEKISQPKQEEQKSL-----NISATPAPKQEQSQTTTE 124
|
90 100 110
....*....|....*....|....*....|....
gi 1534861472 114 SHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTK 147
Cdd:PRK13335 125 STTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIK 158
|
|
| |
