|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
322-1055 |
5.11e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 103.24 E-value: 5.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 322 FIERTFMATPSYVHVATELGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLkeVQKSL 401
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL--LKKAP 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 402 GKSEVLiFLQALLMSRKHKGEEETTALlKEAVELHFSSMQGIPLG--SEY----FEKLDPYFlvciaKEYLLFCPKQP-- 473
Cdd:TIGR02917 259 NSPLAH-YLKALVDFQKKNYEDARETL-QDALKSAPEYLPALLLAgaSEYqlgnLEQAYQYL-----NQILKYAPNSHqa 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 474 -RLPG--QIVSPLLKQVAVILNPVVKAAPalIDPLYL-MAQVRYY-SGELENAQSILQRCLELDPASVDAHLLMCQIYLA 548
Cdd:TIGR02917 332 rRLLAsiQLRLGRVDEAIATLSPALGLDP--DDPAALsLLGEAYLaLGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 549 QGNFGMCFHCLELGVSHNFQVRDhplYHLIKARALNKAGDYPEAIKTLKmviklpALKKEEGRKflrPSVQpSQRASILL 628
Cdd:TIGR02917 410 QGDPSEAIADLETAAQLDPELGR---ADLLLILSYLRSGQFDKALAAAK------KLEKKQPDN---ASLH-NLLGAIYL 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 629 ELVEALRLNGELHEATKVMQDTINEfggtpeenRITIANVDLvlSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQT 708
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPA--------AANLARIDI--QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 709 LRDRRlYIRCYRELCEHLPGPHT-SLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYE 787
Cdd:TIGR02917 547 GNEEE-AVAWLEKAAELNPQEIEpALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 788 AAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQALEHDivqdipsmMNDVKCLLLLAKvykshkkeavIETLNKALDL 866
Cdd:TIGR02917 626 KLLALQPDSALAlLLLADAYAVMKNYAKAITSLKRALELK--------PDNTEAQIGLAQ----------LLLAAKRTES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 867 QSRILKRvpleqpemIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLeLAQLYLLQGHLDLCEQH 946
Cdd:TIGR02917 688 AKKIAKS--------LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKT 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 947 CAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSgkleDIPAFFELAKKVSSRVP 1026
Cdd:TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL----KDPRALEYAERALKLAP 834
|
730 740
....*....|....*....|....*....
gi 1496160270 1027 LEPGFNYCRGIYCWHIGQPNEALKFLNKA 1055
Cdd:TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
733-1010 |
6.75e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.11 E-value: 6.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 733 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKK 811
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAeALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 812 VNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQSRilkrvpleqpemipsqkqlAA 890
Cdd:COG2956 92 LDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPE-------------------NA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 891 SICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFR 970
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1496160270 971 KQKHEAAINLYHQVLEKAPDNFLVLhKLIDLLRRSGKLED 1010
Cdd:COG2956 225 LGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEA 263
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
515-1308 |
3.32e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.99 E-value: 3.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 515 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNFQVRDHplyHLIKARALNKAGDYPEAIK 594
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA---LLLKGDLLLSLGNIELALA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 595 TLKMVIKLpalkkeegrkflrpsvQPSQRASILLELVEALRLnGELHEATKVMQDTINEFGGTPEENRITiANVDLvlSK 674
Cdd:TIGR02917 215 AYRKAIAL----------------RPNNIAVLLALATILIEA-GEFEEAEKHADALLKKAPNSPLAHYLK-ALVDF--QK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 675 GNVDVALNMLRNILPKQSCYMEARE--KMANIYLQTLRDRRLYIRCYrelCEHLPGPHTSLLLgdaLMSIL----EPEKA 748
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLlaGASEYQLGNLEQAYQYLNQI---LKYAPNSHQARRL---LASIQlrlgRVDEA 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 749 LEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGqdflccdlgklllklkkvNKAEKVLKQALEHdiv 828
Cdd:TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP------------------ENAAARTQLGISK--- 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 829 qdipSMMNDVkcllllakvykshkkEAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDK 908
Cdd:TIGR02917 408 ----LSQGDP---------------SEAIADLETAAQLD-----------PELGRADLLLI--------LSYLRSGQFDK 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 909 AVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKA 988
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 989 PDNFLVLHKLIDLLRRSGKledipaffelakkvssrvplepgfnycrgiycwhigqPNEALKFLNKARKdstwgqsaiyh 1068
Cdd:TIGR02917 530 PKNLRAILALAGLYLRTGN-------------------------------------EEEAVAWLEKAAE----------- 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1069 mvqicLNPDNEvvggeafenQGAES---NYMEKKELEQqgvstAEKLLREFyphSDSSQTQLRLLQGLCRLATREKaNME 1145
Cdd:TIGR02917 562 -----LNPQEI---------EPALAlaqYYLGKGQLKK-----ALAILNEA---ADAAPDSPEAWLMLGRAQLAAG-DLN 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1146 AALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELL 1225
Cdd:TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR------ALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1226 RRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgfKLAFNYLKDKKFVEAIEICNDVLREHPDYP 1305
Cdd:TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI--KLHRALLASGNTAEAVKTLEAWLKTHPNDA 770
|
...
gi 1496160270 1306 KIR 1308
Cdd:TIGR02917 771 VLR 773
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
672-987 |
9.67e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.78 E-value: 9.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 672 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALE 750
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 751 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHDivq 829
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLD--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 830 dipsmmndvkcllllakvykshkkeavietlnkaldlqsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDKA 909
Cdd:COG2956 175 -------------------------------------------------PDCARALLLLA--------ELYLEQGDYEEA 197
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496160270 910 VQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLmADLMFRKQKHEAAINLYHQVLEK 987
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
506-826 |
2.57e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.63 E-value: 2.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 506 YLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNK 585
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 586 AGDYPEAIKTLKMVIKLPAlkkeegrkflrpsvqpsqrasillELVEALRLNGELHEATKvmqdtinefggtpeenriti 665
Cdd:COG2956 89 AGLLDRAEELLEKLLELDP------------------------DDAEALRLLAEIYEQEG-------------------- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 666 anvdlvlskgNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILE 744
Cdd:COG2956 125 ----------DWEKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGD 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 745 PEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALE 824
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
..
gi 1496160270 825 HD 826
Cdd:COG2956 274 RH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
124-783 |
4.24e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 87.06 E-value: 4.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 124 GRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPHTA----KKAIEY---------------LEQGIQDTKDV---- 180
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAlaayRKAIALrpnniavllalatilIEAGEFEEAEKhada 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 181 ---------LGLMGKAMYFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDAC 251
Cdd:TIGR02917 253 llkkapnspLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAR 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 252 QILTVHELaREGNMT-------------TVSS----------LKTQKATNHVRNLIKALEtREPENPSLHLKKIIvvSRL 308
Cdd:TIGR02917 333 RLLASIQL-RLGRVDeaiatlspalgldPDDPaalsllgeayLALGDFEKAAEYLAKATE-LDPENAAARTQLGI--SKL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 309 CG-------------------SHQVILGLVCSFIERTFMA------------TPSYVHVATELGYLFILKNQVKEALLWY 357
Cdd:TIGR02917 409 SQgdpseaiadletaaqldpeLGRADLLLILSYLRSGQFDkalaaakklekkQPDNASLHNLLGAIYLGKGDLAKAREAF 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 358 SEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEflKEVQKSLGKSEVLIFLQALLMSRKHkgEEETTALLKEAVELHF 437
Cdd:TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE--KVLTIDPKNLRAILALAGLYLRTGN--EEEAVAWLEKAAELNP 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 438 SSMQG-IPLGSEYFEKLDPYFLVCIAKEYLLFCPKQPRL-----PGQIVSPLLKQVAVILNPVVKAAPALIDPLYLMAQV 511
Cdd:TIGR02917 565 QEIEPaLALAQYYLGKGQLKKALAILNEAADAAPDSPEAwlmlgRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 512 RYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHclelgVSHNFQVR--DHPLYHLIKARALNKAGDY 589
Cdd:TIGR02917 645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK-----IAKSLQKQhpKAALGFELEGDLYLRQKDY 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 590 PEAIKTLKMVIKLpalkkeegrkflrpsvQPSqrASILLELVEALRLNGELHEATKVMQDTINEfggTPEENRITIANVD 669
Cdd:TIGR02917 720 PAAIQAYRKALKR----------------APS--SQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 670 LVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQTLRDRRLYircYRELCEHL-PGPHTSL-LLGDALMSILEPEK 747
Cdd:TIGR02917 779 LYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALE---YAERALKLaPNIPAILdTLGWLLVEKGEADR 855
|
730 740 750
....*....|....*....|....*....|....*.
gi 1496160270 748 ALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAI 783
Cdd:TIGR02917 856 ALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
490-759 |
4.47e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 4.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 490 ILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqv 569
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 570 RDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvqPSQRASILLELVEALRLNGELHEATKVMQD 649
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-----------------GPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 650 TINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGP 729
Cdd:COG2956 170 ALKL---DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPSD 245
|
250 260 270
....*....|....*....|....*....|
gi 1496160270 730 HTSLLLGDALMSILEPEKALEVYDEAYRQN 759
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
114-436 |
3.17e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.68 E-value: 3.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 114 YYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQDTKD-VLGLMGKAMYFMM 192
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEY---DRAIRIHQKLLERDPDrAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 193 QQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACqiltvHELAREgnmttvsslk 272
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY-----CELAEL---------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 273 tqkatnhvrnlikALETREPENPSLHLKKIIvvsrlcgshqvilglvcsfiertfMATPSYVHVATELGYLFILKNQVKE 352
Cdd:COG2956 154 -------------YLEQGDYDEAIEALEKAL------------------------KLDPDCARALLLLAELYLEQGDYEE 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 353 ALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAeyrLEFLKEVQKSLGKSEVLIFLQALLMsrKHKGEEETTALLKEA 432
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELDPSDDLLLALADLLE--RKEGLEAALALLERQ 271
|
....
gi 1496160270 433 VELH 436
Cdd:COG2956 272 LRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1094-1321 |
1.18e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.76 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1094 NYMEKKELEQqgvstAEKLLREFYPHsDSSQTQLRLLQGLCRlatREKANMEAALGSFIQIAQAEKDSVPALLALAQAYV 1173
Cdd:COG2956 17 NYLLNGQPDK-----AIDLLEEALEL-DPETVEAHLALGNLY---RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1174 FLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYK 1253
Cdd:COG2956 88 KAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496160270 1254 DAVTNYKLAWKYSHHANPAIgFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIREEILEKARRSLRP 1321
Cdd:COG2956 162 EAIEALEKALKLDPDCARAL-LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
963-1301 |
5.71e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 5.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 963 LMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEdipaffelakkvssrvplepgfnycrgiycwhi 1042
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD--------------------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1043 gqpnEALKFLNKARKDSTWGQSAIYHMVQIclnpdnevvggeafenqgaesnYMEKKELEQqgvstAEKLLREFyphSDS 1122
Cdd:COG2956 60 ----RAIRIHQKLLERDPDRAEALLELAQD----------------------YLKAGLLDR-----AEELLEKL---LEL 105
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1123 SQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLE 1202
Cdd:COG2956 106 DPDDAEALRLLAEIYEQEG-DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK------ALKLDPDCA 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1203 KSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKysHHANPAIGFKLAFNYL 1282
Cdd:COG2956 179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE--LDPSDDLLLALADLLE 256
|
330
....*....|....*....
gi 1496160270 1283 KDKKFVEAIEICNDVLREH 1301
Cdd:COG2956 257 RKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1043-1320 |
1.04e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.06 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1043 GQPNEALKFLNKARKdstwgqsaiyhmvqicLNPDNEvvggEAFENQGaeSNYMEKKELEQqGVSTAEKLLrefyphsDS 1122
Cdd:COG2956 22 GQPDKAIDLLEEALE----------------LDPETV----EAHLALG--NLYRRRGEYDR-AIRIHQKLL-------ER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1123 SQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKtpwvlsEAEDLE 1202
Cdd:COG2956 72 DPDRAEALLELAQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK------LGPENA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1203 KSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYL 1282
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL-PRLAELYE 223
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1496160270 1283 KDKKFVEAIEICNDVLREHPDYPKI--------REEILEKARRSLR 1320
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLlaladlleRKEGLEAALALLE 269
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
672-1307 |
1.07e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 69.73 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 672 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtlrdrrlyircyrelcehlpgphtsllLGDALMSILEPEKALEv 751
Cdd:TIGR02917 33 LQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA---------------------------LGDYAAAEKELRKALS- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 752 ydeayrQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF--LCCDLGKLLLKLKKVNKAEKVLKQALEHDiVQ 829
Cdd:TIGR02917 85 ------LGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAaeLLALRGLAYLGLGQLELAQKSYEQALAID-PR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 830 DIPSMMNdvkclllLAKVYKSHKKEAvietlnKALDLQSRILKrvplEQPEMIPSQkQLAASIciqfaehYLAEKEYDKA 909
Cdd:TIGR02917 158 SLYAKLG-------LAQLALAENRFD------EARALIDEVLT----ADPGNVDAL-LLKGDL-------LLSLGNIELA 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 910 VQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAP 989
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 990 DNF-------LVLHKLIDLLRRSGKLEDIPAFFE---LAKKVSSRVPLEpgfnycrgiycwhIGQPNEALKFLNKArkds 1059
Cdd:TIGR02917 293 EYLpalllagASEYQLGNLEQAYQYLNQILKYAPnshQARRLLASIQLR-------------LGRVDEAIATLSPA---- 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1060 twgqsaiyhmvqICLNPDNEvvggEAFenQGAESNYMEKKELEQqgvstAEKLL---REFYPHSDSSQTQLrllqGLCRL 1136
Cdd:TIGR02917 356 ------------LGLDPDDP----AAL--SLLGEAYLALGDFEK-----AAEYLakaTELDPENAAARTQL----GISKL 408
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1137 ATREKanmEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL-AKTPwvlseaeDLEKSWLLLADIYCQG 1215
Cdd:TIGR02917 409 SQGDP---SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLeKKQP-------DNASLHNLLGAIYLGK 478
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1216 SKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKE-------QSYKDAVTNY--------KLAWKYSHHANP--AIGF--- 1275
Cdd:TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEgnpddaiQRFEKVLTIDpknlrailALAGLYLRTGNEeeAVAWlek 558
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 1496160270 1276 -------------KLAFNYLKDKKFVEAIEICNDVLREHPDYPKI 1307
Cdd:TIGR02917 559 aaelnpqeiepalALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
889-1020 |
9.10e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 9.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 889 AASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLM 968
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1496160270 969 FRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFFELAKK 1020
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
483-688 |
1.09e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 483 LLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELG 562
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 563 VSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHE 642
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQ----------------DP-DYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1496160270 643 ATKVMQDTINEFGGTPEENRItianVDLVLSKGNVDVALNMLRNIL 688
Cdd:COG2956 231 ALELLRKALELDPSDDLLLAL----ADLLERKEGLEAALALLERQL 272
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
897-991 |
1.40e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 897 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 976
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....*
gi 1496160270 977 AINLYHQVLEKAPDN 991
Cdd:COG4235 104 AIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
484-602 |
1.56e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 484 LKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGV 563
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 1496160270 564 SHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 602
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
923-1057 |
2.30e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.82 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 923 DNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLL 1002
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1496160270 1003 RRSGKLEDIPAFFELAKKVSsrvPLEPGFNYCRGIYCWHIGQPNEALKFLNKARK 1057
Cdd:COG4783 83 LKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
882-1018 |
4.55e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 4.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 882 IPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETAS 961
Cdd:COG3914 70 AAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1496160270 962 VLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFFELA 1018
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
694-869 |
6.62e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.18 E-value: 6.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 694 YMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSL-LLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHA 772
Cdd:COG0457 7 DAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDAEALyNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 773 YVKAHQYTEAIEYYEAAQKINGQDFLCCD-LGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVY-KS 850
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALeKL 157
|
170
....*....|....*....
gi 1496160270 851 HKKEAVIETLNKALDLQSR 869
Cdd:COG0457 158 GRYEEALELLEKLEAAALA 176
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
495-602 |
9.81e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 9.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 495 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 574
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD---PDNAE 181
|
90 100
....*....|....*....|....*...
gi 1496160270 575 YHLIKARALNKAGDYPEAIKTLKMVIKL 602
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
672-796 |
1.29e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 672 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALE 750
Cdd:COG4783 15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALA 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1496160270 751 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 796
Cdd:COG4783 94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
697-826 |
6.59e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 6.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 697 AREKMANIYLQTLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVK 775
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFnLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1496160270 776 AHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHD 826
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAeALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
500-602 |
6.80e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 6.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 500 ALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIK 579
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNL 78
|
90 100
....*....|....*....|...
gi 1496160270 580 ARALNKAGDYPEAIKTLKMVIKL 602
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKL 101
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
756-1031 |
8.23e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.01 E-value: 8.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 756 YRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKkvnkAEKVLKQALEHDIVQDIPSMM 835
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAA----AAALLALAAGEAAAAAAALLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 836 NDVKCLLLLAKVYKSHKKEAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAAsiciqfaeHYLAEKEYDKAVQSYKD 915
Cdd:COG3914 77 LAALLELAALLLQALGRYEEALALYRRALALN-----------PDNAEALFNLGN--------LLLALGRLEEALAALRR 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 916 VFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVL 995
Cdd:COG3914 138 ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
250 260 270
....*....|....*....|....*....|....*.
gi 1496160270 996 HKLIDLLRRSGKLEDIPAFFELAKKVSSRVPLEPGF 1031
Cdd:COG3914 218 SNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
495-602 |
1.64e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.24 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 495 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 574
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---PDNPE 86
|
90 100
....*....|....*....|....*...
gi 1496160270 575 YHLIKARALNKAGDYPEAIKTLKMVIKL 602
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
622-797 |
3.80e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 57.70 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 622 QRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKM 701
Cdd:COG3914 39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 702 ANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYT 780
Cdd:COG3914 119 GNLLLA-LGRLEEALAALRRALALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
|
170
....*....|....*..
gi 1496160270 781 EAIEYYEAAQKINGQDF 797
Cdd:COG3914 198 EAIAAYRRALELDPDNA 214
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
696-826 |
8.01e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 8.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 696 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 774
Cdd:COG4783 5 EALYALAQALLL-AGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1496160270 775 KAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHD 826
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
747-866 |
1.60e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 747 KALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEH 825
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNaDALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1496160270 826 DivqdiPsmmNDVKCLLLLAKVY-KSHKKEAVIETLNKALDL 866
Cdd:COG4235 81 D-----P---DNPEALYLLGLAAfQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1162-1304 |
1.75e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1162 VPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEY 1241
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEK------ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496160270 1242 MGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDY 1304
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1109-1308 |
2.38e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.38 E-value: 2.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1109 AEKLLREFYPHSDSSQTQLRLLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL 1188
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1189 aktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHH 1268
Cdd:COG3914 105 ------LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL-DP 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1496160270 1269 ANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR 1308
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
112-250 |
2.40e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.47 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRY---EEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
733-796 |
4.77e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.00 E-value: 4.77e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496160270 733 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 796
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
836-1016 |
5.62e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 5.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 836 NDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAASiciqfaehYLAEKEYDKAVQSYK 914
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRyEEAIEDYEKALELD-----------PDDAEALYNLGLA--------YLRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 915 DVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLV 994
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
170 180
....*....|....*....|..
gi 1496160270 995 LHKLIDLLRRSGKLEDIPAFFE 1016
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLE 168
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
759-1013 |
5.68e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 5.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 759 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmND 837
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP--------DD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 838 VKCLLLLAKVY-KSHKKEAVIETLNKALDLQSRIlkrvpleqpemipsqkqlaASICIQFAEHYLAEKEYDKAVQSYKDV 916
Cdd:COG0457 76 AEALNNLGLALqALGRYEEALEDYDKALELDPDD-------------------AEALYNLGLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 917 FSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLH 996
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
250
....*....|....*..
gi 1496160270 997 KLIDLLRRSGKLEDIPA 1013
Cdd:COG0457 217 AALAELLLLALALLLAL 233
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
496-648 |
6.50e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 6.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 496 KAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLY 575
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEA 148
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496160270 576 HLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHEATKVMQ 648
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALEL----------------DP-DNAEALNNLGNALQDLGRLEEAIAAYR 204
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
680-796 |
1.62e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 680 ALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQ 758
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLR-LGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*...
gi 1496160270 759 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 796
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1139-1320 |
3.14e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1139 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKF 1218
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ------ALELDPDDAEALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1219 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAFNYLKDKKFVEAIEICNDVL 1298
Cdd:COG0457 93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD-DADALYNLGIALEKLGRYEEALELLEKLE 171
|
170 180
....*....|....*....|..
gi 1496160270 1299 REHPDYPKIREEILEKARRSLR 1320
Cdd:COG0457 172 AAALAALLAAALGEAALALAAA 193
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
908-1010 |
3.16e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 3.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 908 KAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEK 987
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|...
gi 1496160270 988 APDNFLVLHKLIDLLRRSGKLED 1010
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAE 103
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
112-247 |
4.78e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 4.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL---DEAIVLLHEALElDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1496160270 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESN 247
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1143-1262 |
4.82e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1143 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLAL 1222
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPEARLNLGLALLKAGDYDEAL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1496160270 1223 ELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1262
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
897-991 |
5.21e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 5.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 897 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 976
Cdd:COG4783 45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
90
....*....|....*
gi 1496160270 977 AINLYHQVLEKAPDN 991
Cdd:COG4783 125 AIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
624-799 |
5.62e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 50.76 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 624 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 702
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLAlGRLEEALAALRRALALNPDFAEAYLNLG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 703 NIyLQTLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 781
Cdd:COG3914 154 EA-LRRLGRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
170
....*....|....*...
gi 1496160270 782 AIEYYEAAQKINGQDFLC 799
Cdd:COG3914 233 YDRFEELLAALARGPSEL 250
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
494-552 |
5.75e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 5.75e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1496160270 494 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 552
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-250 |
8.52e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 8.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 43 FFKAYGVLKEEHIQDAISDLES-IRHHPD-VSLCSTMALIYAhKRCEIidREAIQELEYSLKeiRKTVSGTALYYAGLFL 120
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEaLELDPEtVEAHLALGNLYR-RRGEY--DRAIRIHQKLLE--RDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 121 WLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYFMMQQNYSEA 199
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW---EKAIEVLERLLKlGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1496160270 200 LEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
624-798 |
1.06e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.46 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 624 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 702
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE----ALYNLGLAYLRlGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 703 NIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 781
Cdd:COG0457 84 LALQA-LGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170
....*....|....*..
gi 1496160270 782 AIEYYEAAQKINGQDFL 798
Cdd:COG0457 163 ALELLEKLEAAALAALL 179
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1152-1302 |
1.46e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1152 IQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQY 1231
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1496160270 1232 NKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYShHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHP 1302
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
494-602 |
1.50e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 494 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 573
Cdd:COG0457 34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD---PDDA 110
|
90 100
....*....|....*....|....*....
gi 1496160270 574 LYHLIKARALNKAGDYPEAIKTLKMVIKL 602
Cdd:COG0457 111 EALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
91-250 |
2.18e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 47.69 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 91 REAIQELEYSLKEIRKtvSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYL 170
Cdd:COG0457 25 EEAIEDYEKALELDPD--DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRY---EEALEDY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 171 EQGIQ-DTKDVLGLMGKAMYFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNID 249
Cdd:COG0457 100 DKALElDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
.
gi 1496160270 250 A 250
Cdd:COG0457 180 A 180
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1146-1262 |
2.26e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1146 AALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELL 1225
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK------ALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 1496160270 1226 RRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1262
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
746-829 |
2.30e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 746 EKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALE 824
Cdd:COG5010 71 EESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
....*
gi 1496160270 825 HDIVQ 829
Cdd:COG5010 151 TSPLK 155
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1143-1230 |
2.53e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1143 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLAL 1222
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER------ALALDPDNPEALYLLGLAAFQQGDYAEAI 105
|
....*...
gi 1496160270 1223 ELLRRCVQ 1230
Cdd:COG4235 106 AAWQKLLA 113
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
951-1059 |
3.04e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 951 LQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGkleDIPAFFELAKKVSSRVPLEPG 1030
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG---DTEEAEELLERALALDPDNPE 86
|
90 100
....*....|....*....|....*....
gi 1496160270 1031 FNYCRGIYCWHIGQPNEALKFLNKARKDS 1059
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
497-606 |
3.47e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 497 AAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYH 576
Cdd:COG5010 49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAY 125
|
90 100 110
....*....|....*....|....*....|
gi 1496160270 577 LIKARALNKAGDYPEAIKTLKMVIKLPALK 606
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
494-597 |
4.06e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 494 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGM---CF-HCLELgVSHNFQV 569
Cdd:COG3914 138 ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEaiaAYrRALEL-DPDNADA 216
|
90 100
....*....|....*....|....*...
gi 1496160270 570 RDHPLYHLIKARALNKAGDYPEAIKTLK 597
Cdd:COG3914 217 HSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
525-602 |
4.47e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 4.47e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496160270 525 LQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 602
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
495-602 |
5.93e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 495 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 574
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD---PDDAE 77
|
90 100
....*....|....*....|....*...
gi 1496160270 575 YHLIKARALNKAGDYPEAIKTLKMVIKL 602
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALEL 105
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1205-1311 |
7.57e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 7.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1205 WLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKD 1284
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 1496160270 1285 KKFVEAIEICNDVLREHPDYPKIREEI 1311
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1200-1308 |
7.71e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.77 E-value: 7.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1200 DLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAF 1279
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-DAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 1496160270 1280 NYLKDKKFVEAIEICNDVLREHPDYPKIR 1308
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
900-990 |
8.92e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 900 YLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQhCAILLQTEQNHETASVLMADLMFRKQKHEAAIN 979
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1496160270 980 LYHQVLEKAPD 990
Cdd:COG3063 81 YLERALELDPS 91
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
507-792 |
1.30e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 45.67 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 507 LMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELgvSHNFQVRDHPLYHLIKARALNKA 586
Cdd:COG3071 21 LEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQ--ALELAPEAELAVLLTRAELLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 587 GDYPEAIKTLKmviklpALKKEEGRkflrpsvqpsqRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEE--NRIT 664
Cdd:COG3071 99 GQAEQALATLE------ALRAGAPR-----------HPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEaqALER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 665 IANVDLVLSKGNVDVALNMLRNILPKQSCYMEArekMANIYLQTLRDRRLYIRCYRELCEHLP-GPHTSL--LLGDALMS 741
Cdd:COG3071 162 RAYLGLLRQAARDAEALKALWKALPRAERRDPE---LAAAYARALIALGDHDEAERLLREALKrQWDPRLvrLYGRLQGG 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1496160270 742 ilEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKI 792
Cdd:COG3071 239 --DPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL 287
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
516-602 |
1.33e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 516 GELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHcLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKT 595
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 1496160270 596 LKMVIKL 602
Cdd:COG3063 82 LERALEL 88
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
696-793 |
1.39e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 696 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 774
Cdd:COG5010 55 AIESPSDNLYNK-LGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
|
90
....*....|....*....
gi 1496160270 775 KAHQYTEAIEYYEAAQKIN 793
Cdd:COG5010 134 SLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
744-826 |
1.57e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 744 EPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEyYEAAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQA 822
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAlLNLAELLLELGDYDEALAYLERA 85
|
....
gi 1496160270 823 LEHD 826
Cdd:COG3063 86 LELD 89
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
508-643 |
1.80e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 45.57 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 508 MAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLElgvshnfqvrdhplyhlikaRALNKAG 587
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE--------------------RVEEQDP 245
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1496160270 588 DY-PEAIKTLKMVIKlpALKK-EEGRKFLRPSVQPSQRASILLELVEALRLNGELHEA 643
Cdd:PRK11788 246 EYlSEVLPKLMECYQ--ALGDeAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
860-989 |
1.88e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 860 LNKALDLQSRILKRVPLEQPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGH 939
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1496160270 940 LDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAP 989
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1186-1315 |
2.36e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1186 KRLAKTPwvlseaEDLEkSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKY 1265
Cdd:COG4235 8 QALAANP------NDAE-GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1496160270 1266 sHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR--EEILEKA 1315
Cdd:COG4235 81 -DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARllEASIAEA 131
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
494-597 |
2.86e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 494 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 573
Cdd:COG0457 68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---PDDA 144
|
90 100
....*....|....*....|....
gi 1496160270 574 LYHLIKARALNKAGDYPEAIKTLK 597
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1204-1313 |
5.26e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1204 SWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYLK 1283
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLK 88
|
90 100 110
....*....|....*....|....*....|
gi 1496160270 1284 DKKFVEAIEICNDVLREHPDYPKIREEILE 1313
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
900-1014 |
6.10e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.64 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 900 YLAEKEYDKAVQSYKDVFSYLPTDNKVML-----ELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKH 974
Cdd:PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1496160270 975 EAAINLYHQVLEKAPDNF-LVLHKLIDLLRRSGKLEDIPAF 1014
Cdd:PRK11788 231 AAAIEALERVEEQDPEYLsEVLPKLMECYQALGDEAEGLEF 271
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
900-990 |
7.59e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 900 YLAEKEYDKAVQSYKDVFSYLPTDN---KVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETAS---VLMADLMFRKQK 973
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGD 82
|
90
....*....|....*..
gi 1496160270 974 HEAAINLYHQVLEKAPD 990
Cdd:COG1729 83 YDKARATLEELIKKYPD 99
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
529-830 |
9.74e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.30 E-value: 9.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 529 LELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkke 608
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD---PDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 609 egrkflrpsvQPsQRASILLELVEALRLNGELHEAtkvmqdtinefggtpeenritianvdlvlskgnvdvaLNMLRNIL 688
Cdd:COG0457 72 ----------DP-DDAEALNNLGLALQALGRYEEA-------------------------------------LEDYDKAL 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 689 PKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLAS 767
Cdd:COG0457 104 ELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYnLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496160270 768 RIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALEHDIVQD 830
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
903-967 |
1.62e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 1.62e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496160270 903 EKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADL 967
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
1103-1235 |
2.23e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.10 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1103 QQGVSTAEKLLRefyphSDSSQTQLRLLQGLCRLATREKA--NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPK 1180
Cdd:PRK11788 158 QKAIDVAERLEK-----LGGDSLRVEIAHFYCELAQQALArgDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1496160270 1181 ARMQLKRLAKT-PWVLSEAEDlekswlLLADIYCQGSKFDLALELLRRCVQYNKSC 1235
Cdd:PRK11788 233 AIEALERVEEQdPEYLSEVLP------KLMECYQALGDEAEGLEFLRRALEEYPGA 282
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
92-201 |
2.27e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 92 EAIQELEYSLKEIRKtvSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLE 171
Cdd:COG4235 1 EAIARLRQALAANPN--DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT---EEAEELLE 75
|
90 100 110
....*....|....*....|....*....|.
gi 1496160270 172 QGIQ-DTKDVLGLMGKAMYFMMQQNYSEALE 201
Cdd:COG4235 76 RALAlDPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
515-552 |
2.62e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 2.62e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1496160270 515 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 552
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRL 38
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
91-244 |
2.79e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 91 REAIQELEYSLKEirKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYL 170
Cdd:COG2956 127 EKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDY---EEAIAAL 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496160270 171 EQGI-QDTKDVLGLMGKAMYFMMQQNYSEALEVVNQItVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKD 244
Cdd:COG2956 202 ERALeQDPDYLPALPRLAELYEKLGDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
967-1057 |
4.34e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 967 LMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFfelaKKVSSRVPLEPGFNYCRGIYCWHIGQPN 1046
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL----EKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|.
gi 1496160270 1047 EALKFLNKARK 1057
Cdd:COG3063 77 EALAYLERALE 87
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
894-1001 |
5.03e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 40.95 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 894 IQFAEHYLAEKEYDKAVQSYKDVF----SYLPtdnkvmLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVL--MADL 967
Cdd:PRK11788 218 ILLGDLALAQGDYAAAIEALERVEeqdpEYLS------EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLlaLAQL 291
|
90 100 110
....*....|....*....|....*....|....
gi 1496160270 968 MFRKQKHEAAINLYHQVLEKAPdNFLVLHKLIDL 1001
Cdd:PRK11788 292 LEEQEGPEAAQALLREQLRRHP-SLRGFHRLLDY 324
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1139-1314 |
5.62e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1139 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEkswlllADIYCQGSKF 1218
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK------ALVDFQKKNY 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 1219 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIGFkLAFNYLKDKKFVEAIEICNDVL 1298
Cdd:TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPAL 356
|
170 180
....*....|....*....|
gi 1496160270 1299 REHPDYPKIR----EEILEK 1314
Cdd:TIGR02917 357 GLDPDDPAALsllgEAYLAL 376
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
933-1024 |
5.93e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 5.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 933 LYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINlYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIP 1012
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1496160270 1013 AFFELAKKVSSR 1024
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
719-793 |
8.39e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.48 E-value: 8.39e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1496160270 719 YRELCEHL---PGPHTSLLLGDALMSILEPEKALEVYDEAY-RQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKIN 793
Cdd:COG4700 76 LRELEKALefaDTVQNRVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKN 154
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
933-1018 |
9.80e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496160270 933 LYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIP 1012
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
....*.
gi 1496160270 1013 AFFELA 1018
Cdd:COG5010 143 AALQRA 148
|
|
| |
