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Conserved domains on  [gi|1063708974|ref|NP_001327030|]
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Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

RCC1-like domain-containing protein( domain architecture ID 13421108)

RCC1 (regulator of chromosome condensation)-like (RLD) domain-containing is a versatile domain which may perform many different functions, including guanine nucleotide exchange on small GTP-binding proteins, enzyme inhibition or interaction with proteins and lipids

CATH:  2.130.10.30
PubMed:  18442486
SCOP:  3001704

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 76-423 8.45e-67

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 217.92  E-value: 8.45e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  76 DISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSefVKFVSCGAFCTAAIAEprenDGTlstsrLW 155
Cdd:COG5184     2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKA----DGT-----VW 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 156 VWGQN------QGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTcEGLQAPRVInayak 229
Cdd:COG5184    71 CWGNNsygqlgDGTTTDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQV----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 230 fldeAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALS 309
Cdd:COG5184   145 ----DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTD---RPTPVQVGGLSGVV--AVAAGGDHSCALK 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 310 LEGALYAWgggqagqlglgpQSGFFFSVSNGSeMLLRNVPVLVI-PTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAA 388
Cdd:COG5184   216 SDGTVWCW------------GSNSSGQLGDGT-TTDRATPVQVAgLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1063708974 389 NEKSSYAWYPSPVDWcVGQVRKLAAGGGHS-AVLTD 423
Cdd:COG5184   283 DGTTTDRSTPVKVPG-LSGVVAVAAGSSHTcALLTD 317
ATS1 super family cl34932
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 32-115 1.48e-12

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


The actual alignment was detected with superfamily member COG5184:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 68.46  E-value: 1.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  32 AIYVWGYNQSGQTGRNEQEKLLrIPKQLPPElfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 111
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRS-TPVKVPGL---------SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTD 338


                  ....
gi 1063708974 112 RKHP 115
Cdd:COG5184   339 RSTP 342
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 76-423 8.45e-67

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 217.92  E-value: 8.45e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  76 DISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSefVKFVSCGAFCTAAIAEprenDGTlstsrLW 155
Cdd:COG5184     2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKA----DGT-----VW 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 156 VWGQN------QGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTcEGLQAPRVInayak 229
Cdd:COG5184    71 CWGNNsygqlgDGTTTDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQV----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 230 fldeAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALS 309
Cdd:COG5184   145 ----DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTD---RPTPVQVGGLSGVV--AVAAGGDHSCALK 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 310 LEGALYAWgggqagqlglgpQSGFFFSVSNGSeMLLRNVPVLVI-PTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAA 388
Cdd:COG5184   216 SDGTVWCW------------GSNSSGQLGDGT-TTDRATPVQVAgLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1063708974 389 NEKSSYAWYPSPVDWcVGQVRKLAAGGGHS-AVLTD 423
Cdd:COG5184   283 DGTTTDRSTPVKVPG-LSGVVAVAAGSSHTcALLTD 317
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
90-139 5.23e-13

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 63.31  E-value: 5.23e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063708974  90 DGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAI 139
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 32-115 1.48e-12

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 68.46  E-value: 1.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  32 AIYVWGYNQSGQTGRNEQEKLLrIPKQLPPElfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 111
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRS-TPVKVPGL---------SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTD 338


                  ....
gi 1063708974 112 RKHP 115
Cdd:COG5184   339 RSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
33-87 4.65e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.96  E-value: 4.65e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063708974  33 IYVWGYNQSGQTGRNEQEKLLrIPKQLPPELfgcpagaNSRWLDISCGREHTAAV 87
Cdd:pfam00415   4 VYTWGRNDYGQLGLGTTENVL-VPQKVEGLS-------GNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 76-423 8.45e-67

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 217.92  E-value: 8.45e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  76 DISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSefVKFVSCGAFCTAAIAEprenDGTlstsrLW 155
Cdd:COG5184     2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKA----DGT-----VW 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 156 VWGQN------QGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTcEGLQAPRVInayak 229
Cdd:COG5184    71 CWGNNsygqlgDGTTTDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQV----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 230 fldeAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALS 309
Cdd:COG5184   145 ----DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTD---RPTPVQVGGLSGVV--AVAAGGDHSCALK 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 310 LEGALYAWgggqagqlglgpQSGFFFSVSNGSeMLLRNVPVLVI-PTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAA 388
Cdd:COG5184   216 SDGTVWCW------------GSNSSGQLGDGT-TTDRATPVQVAgLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1063708974 389 NEKSSYAWYPSPVDWcVGQVRKLAAGGGHS-AVLTD 423
Cdd:COG5184   283 DGTTTDRSTPVKVPG-LSGVVAVAAGSSHTcALLTD 317
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 32-321 1.36e-49

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 172.85  E-value: 1.36e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  32 AIYVWGYNQSGQTGRNEQEKLlRIPKQLPpelfgcpagANSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 111
Cdd:COG5184    68 TVWCWGNNSYGQLGDGTTTDR-TTPVKVP---------GLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTN 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 112 RKHPKKVKQLQSEFVKfVSCGAFCTAAIAEprenDGTLstsrlWVWGQNQ------GSNLPRLFSGAFPATTAIRQVSCG 185
Cdd:COG5184   138 RLTPVQVDAGLSGVVA-IAAGGYHTCALKS----DGTV-----WCWGANSygqlgdGTTTDRPTPVQVGGLSGVVAVAAG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 186 TAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLqAPRVInayakfldeaPELVKIMQLSCGEYHTAALSDAGEVYTWGLG 265
Cdd:COG5184   208 GDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRA-TPVQV----------AGLTGVVAIAAGGSHTCALKSDGTVWCWGDN 276

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063708974 266 SMGQLGHVSLQSgdkELIPRRVVGLDGVSmkEVACGGVHTCALSLEGALYAWGGGQ 321
Cdd:COG5184   277 SYGQLGDGTTTD---RSTPVKVPGLSGVV--AVAAGSSHTCALLTDGTVWCWGDNA 327
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 33-271 4.99e-43

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 155.52  E-value: 4.99e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  33 IYVWGYNQSGQTGRNEQEKLLrIPKQLPPELfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGR 112
Cdd:COG5184   119 VWCWGDNSSGQLGDGTTTNRL-TPVQVDAGL--------SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDR 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 113 KHPKKVKQLQSefVKFVSCGAFCTAAIAepreNDGTlstsrLWVWGQNQ------GSNLPRLFSGAFPATTAIRQVSCGT 186
Cdd:COG5184   190 PTPVQVGGLSG--VVAVAAGGDHSCALK----SDGT-----VWCWGSNSsgqlgdGTTTDRATPVQVAGLTGVVAIAAGG 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 187 AHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVinayakfldeaPELVKIMQLSCGEYHTAALSDAGEVYTWGLGS 266
Cdd:COG5184   259 SHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKV-----------PGLSGVVAVAAGSSHTCALLTDGTVWCWGDNA 327


                  ....*
gi 1063708974 267 MGQLG 271
Cdd:COG5184   328 YGQLG 332
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 180-423 5.68e-40

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 147.05  E-value: 5.68e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 180 RQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVinayakfldeaPELVKIMQLSCGEYHTAALSDAGEV 259
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRV-----------PGLSNVVAVAAGGDHTCALKADGTV 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 260 YTWGLGSMGQLGhvsLQSGDKELIPRRVVGLDGVsmKEVACGGVHTCALSLEGALYAWGggqagqlglgpqSGFFFSVSN 339
Cdd:COG5184    70 WCWGNNSYGQLG---DGTTTDRTTPVKVPGLTGV--VAVAAGYYHSCALKSDGTVWCWG------------DNSSGQLGD 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 340 GSEMlLRNVPVLVIP--TDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAWYPSPVDwCVGQVRKLAAGGGH 417
Cdd:COG5184   133 GTTT-NRLTPVQVDAglSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVG-GLSGVVAVAAGGDH 210


                  ....*..
gi 1063708974 418 S-AVLTD 423
Cdd:COG5184   211 ScALKSD 217
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 32-214 6.89e-30

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 119.31  E-value: 6.89e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  32 AIYVWGYNQSGQTGRNEQekllriPKQLPPElfgcPAGANSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 111
Cdd:COG5184   169 TVWCWGANSYGQLGDGTT------TDRPTPV----QVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTD 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974 112 RKHPKKVKQLQSefVKFVSCGAFCTAAIAepreNDGTLstsrlWVWGQN------QGSNLPRLFSGAFPATTAIRQVSCG 185
Cdd:COG5184   239 RATPVQVAGLTG--VVAIAAGGSHTCALK----SDGTV-----WCWGDNsygqlgDGTTTDRSTPVKVPGLSGVVAVAAG 307

                         170       180
                  ....*....|....*....|....*....
gi 1063708974 186 TAHVVALSEEGLLQAWGYNEQGQLGRGVT 214
Cdd:COG5184   308 SSHTCALLTDGTVWCWGDNAYGQLGDGTT 336
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
90-139 5.23e-13

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 63.31  E-value: 5.23e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063708974  90 DGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAI 139
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 32-115 1.48e-12

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 68.46  E-value: 1.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708974  32 AIYVWGYNQSGQTGRNEQEKLLrIPKQLPPElfgcpaganSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVG 111
Cdd:COG5184   269 TVWCWGDNSYGQLGDGTTTDRS-TPVKVPGL---------SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTD 338


                  ....
gi 1063708974 112 RKHP 115
Cdd:COG5184   339 RSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
257-308 6.51e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.22  E-value: 6.51e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063708974 257 GEVYTWGLGSMGQLGHVSLQSgdkELIPRRVVGLDGVSMKEVACGGVHTCAL 308
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTEN---VLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
76-103 2.25e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 46.65  E-value: 2.25e-07
                          10        20
                  ....*....|....*....|....*...
gi 1063708974  76 DISCGREHTAAVASDGSLFAWGANEYGQ 103
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
195-253 4.94e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 46.36  E-value: 4.94e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1063708974 195 EGLLQAWGYNEQGQLGRGvTCEGLQAPRVInayakfldEAPELVKIMQLSCGEYHTAAL 253
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLG-TTENVLVPQKV--------EGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
242-269 6.35e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 42.80  E-value: 6.35e-06
                          10        20
                  ....*....|....*....|....*...
gi 1063708974 242 QLSCGEYHTAALSDAGEVYTWGLGSMGQ 269
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
179-208 1.40e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 41.64  E-value: 1.40e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063708974 179 IRQVSCGTAHVVALSEEGLLQAWGYNEQGQ 208
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
357-386 3.43e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 40.49  E-value: 3.43e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063708974 357 VRLVACGHSHTLVYMREGRICGWGYNSYGQ 386
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
33-87 4.65e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.96  E-value: 4.65e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063708974  33 IYVWGYNQSGQTGRNEQEKLLrIPKQLPPELfgcpagaNSRWLDISCGREHTAAV 87
Cdd:pfam00415   4 VYTWGRNDYGQLGLGTTENVL-VPQKVEGLS-------GNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
373-421 6.18e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 37.50  E-value: 6.18e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063708974 373 EGRICGWGYNSYGQAANEKSSYAWYPSPVDWCVGQ-VRKLAAGGGHSAVL 421
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNkVVQVACGGDHTVAL 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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