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Conserved domains on  [gi|1060099076|ref|NP_001317461|]
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Rhamnogalacturonan I rhamnosyltransferase 1 [Zea mays]

Protein Classification

O-fucosyltransferase family protein( domain architecture ID 10181944)

O-fucosyltransferase family protein may be involved in glycan metabolism by O-fucosylation of protein substrates; similar to O-fucosyltransferases which are involved in glycan metabolism

EC:  2.4.1.-
Gene Ontology:  GO:0016757|GO:0046922|GO:0036066

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
O-FucT_plant cd11299
GDP-fucose protein O-fucosyltransferase, plant specific subfamily; Some members of this ...
62-360 1.18e-131

GDP-fucose protein O-fucosyltransferase, plant specific subfamily; Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


:

Pssm-ID: 211385  Cd Length: 290  Bit Score: 380.76  E-value: 1.18e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076  62 YLKISCNGGLNQMRSEICDMVAVARLLNLTMVVPELDKRSFWADQSNFGDIFDVKHFIDSLRDEVHIIEQLPEKLgpRDS 141
Cdd:cd11299     1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKSLKDDVRVVKKLPEEL--ASK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 142 DIIILEMSPVSWSDEKYYLHQILPLFSKYSVIHFNKTDARLANN---------------------------GNELVHKLR 194
Cdd:cd11299    79 KPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLANDllppeiqrlrcrvnfhalrfvpeieelGDKLVDRLR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 195 AKGS-FVALHLRYEMDMLAFSGCnhglspeeaeelkkmryaypwwrdkeidsqakrlqGLCPLTPEEASLVLKALGFQKD 273
Cdd:cd11299   159 EAGGpFLALHLRFEKDMLAFSGC-----------------------------------GKCPLTPEEVGLLLRALGFPRS 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 274 ALIYIAAGEIYGGDRRLEPLRAAFPNLVRKVMLLNSEVLRQFQNHSSQMAALDFIVSTASDVFIPTFDGNMAKLVEGHRR 353
Cdd:cd11299   204 TRIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGNFAKAVAGHRR 283

                  ....*..
gi 1060099076 354 FLGFRRS 360
Cdd:cd11299   284 YLGHRKT 290
 
Name Accession Description Interval E-value
O-FucT_plant cd11299
GDP-fucose protein O-fucosyltransferase, plant specific subfamily; Some members of this ...
62-360 1.18e-131

GDP-fucose protein O-fucosyltransferase, plant specific subfamily; Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


Pssm-ID: 211385  Cd Length: 290  Bit Score: 380.76  E-value: 1.18e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076  62 YLKISCNGGLNQMRSEICDMVAVARLLNLTMVVPELDKRSFWADQSNFGDIFDVKHFIDSLRDEVHIIEQLPEKLgpRDS 141
Cdd:cd11299     1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKSLKDDVRVVKKLPEEL--ASK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 142 DIIILEMSPVSWSDEKYYLHQILPLFSKYSVIHFNKTDARLANN---------------------------GNELVHKLR 194
Cdd:cd11299    79 KPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLANDllppeiqrlrcrvnfhalrfvpeieelGDKLVDRLR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 195 AKGS-FVALHLRYEMDMLAFSGCnhglspeeaeelkkmryaypwwrdkeidsqakrlqGLCPLTPEEASLVLKALGFQKD 273
Cdd:cd11299   159 EAGGpFLALHLRFEKDMLAFSGC-----------------------------------GKCPLTPEEVGLLLRALGFPRS 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 274 ALIYIAAGEIYGGDRRLEPLRAAFPNLVRKVMLLNSEVLRQFQNHSSQMAALDFIVSTASDVFIPTFDGNMAKLVEGHRR 353
Cdd:cd11299   204 TRIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGNFAKAVAGHRR 283

                  ....*..
gi 1060099076 354 FLGFRRS 360
Cdd:cd11299   284 YLGHRKT 290
O-FucT pfam10250
GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing ...
66-355 1.49e-79

GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present in O-FucT-1 as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteriztic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese.


Pssm-ID: 463023 [Multi-domain]  Cd Length: 247  Bit Score: 246.06  E-value: 1.49e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076  66 SCNGGLNQMRSEICDMVAVARLLNLTMVVPELDKRSFWADQS----NFGDIFDVkhFIDSLrdevhiieqLPEKLGPRDs 141
Cdd:pfam10250   6 PCNGGFNQQRDHICDAVAFARLLNATLVLPPWDQLYHWRDPStdqiPFSDIFDE--FIESL---------CRSKQGNFG- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 142 diiilemspvswsdekyylhqilPLFSKYSVIHFNKtdaRLANNGNELVHKLRaKGSFVALHLRYEMDMLAFSGCNHGLS 221
Cdd:pfam10250  74 -----------------------PFWVNFHALRFSP---EIEELGDKLVDRLL-KGPYLALHLRREKDMLAASGCAEGGG 126
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 222 PEEAEElkkmryaypwwrdkeiDSQAKRLQGLCPLTPEE-----ASLVLKALGF-QKDALIYIAAGEIYGGDRrLEPLRA 295
Cdd:pfam10250 127 DEEAEE----------------DPEERRRNGLCPLTPEEclpslVGILLQALGFvKKLTRIYVATDEIYGGEE-LAPLKS 189
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 296 AFPNLVRKVMLLNSEVLRQFQNHSSQmaALDFIVSTASDVFIPTFDGNMAKLVEGHRRFL 355
Cdd:pfam10250 190 MFPNLVTKESLASVEELEPFKDGSSA--ALDYIICLHSDVFIGTCVSNFSAFVKGERRYL 247
 
Name Accession Description Interval E-value
O-FucT_plant cd11299
GDP-fucose protein O-fucosyltransferase, plant specific subfamily; Some members of this ...
62-360 1.18e-131

GDP-fucose protein O-fucosyltransferase, plant specific subfamily; Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


Pssm-ID: 211385  Cd Length: 290  Bit Score: 380.76  E-value: 1.18e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076  62 YLKISCNGGLNQMRSEICDMVAVARLLNLTMVVPELDKRSFWADQSNFGDIFDVKHFIDSLRDEVHIIEQLPEKLgpRDS 141
Cdd:cd11299     1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKSLKDDVRVVKKLPEEL--ASK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 142 DIIILEMSPVSWSDEKYYLHQILPLFSKYSVIHFNKTDARLANN---------------------------GNELVHKLR 194
Cdd:cd11299    79 KPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLANDllppeiqrlrcrvnfhalrfvpeieelGDKLVDRLR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 195 AKGS-FVALHLRYEMDMLAFSGCnhglspeeaeelkkmryaypwwrdkeidsqakrlqGLCPLTPEEASLVLKALGFQKD 273
Cdd:cd11299   159 EAGGpFLALHLRFEKDMLAFSGC-----------------------------------GKCPLTPEEVGLLLRALGFPRS 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 274 ALIYIAAGEIYGGDRRLEPLRAAFPNLVRKVMLLNSEVLRQFQNHSSQMAALDFIVSTASDVFIPTFDGNMAKLVEGHRR 353
Cdd:cd11299   204 TRIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGNFAKAVAGHRR 283

                  ....*..
gi 1060099076 354 FLGFRRS 360
Cdd:cd11299   284 YLGHRKT 290
O-FucT pfam10250
GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing ...
66-355 1.49e-79

GDP-fucose protein O-fucosyltransferase; This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present in O-FucT-1 as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteriztic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese.


Pssm-ID: 463023 [Multi-domain]  Cd Length: 247  Bit Score: 246.06  E-value: 1.49e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076  66 SCNGGLNQMRSEICDMVAVARLLNLTMVVPELDKRSFWADQS----NFGDIFDVkhFIDSLrdevhiieqLPEKLGPRDs 141
Cdd:pfam10250   6 PCNGGFNQQRDHICDAVAFARLLNATLVLPPWDQLYHWRDPStdqiPFSDIFDE--FIESL---------CRSKQGNFG- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 142 diiilemspvswsdekyylhqilPLFSKYSVIHFNKtdaRLANNGNELVHKLRaKGSFVALHLRYEMDMLAFSGCNHGLS 221
Cdd:pfam10250  74 -----------------------PFWVNFHALRFSP---EIEELGDKLVDRLL-KGPYLALHLRREKDMLAASGCAEGGG 126
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 222 PEEAEElkkmryaypwwrdkeiDSQAKRLQGLCPLTPEE-----ASLVLKALGF-QKDALIYIAAGEIYGGDRrLEPLRA 295
Cdd:pfam10250 127 DEEAEE----------------DPEERRRNGLCPLTPEEclpslVGILLQALGFvKKLTRIYVATDEIYGGEE-LAPLKS 189
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 296 AFPNLVRKVMLLNSEVLRQFQNHSSQmaALDFIVSTASDVFIPTFDGNMAKLVEGHRRFL 355
Cdd:pfam10250 190 MFPNLVTKESLASVEELEPFKDGSSA--ALDYIICLHSDVFIGTCVSNFSAFVKGERRYL 247
O-FucT_like cd11296
GDP-fucose protein O-fucosyltransferase and related proteins; O-fucosyltransferase-like ...
187-357 1.50e-05

GDP-fucose protein O-fucosyltransferase and related proteins; O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.


Pssm-ID: 211383  Cd Length: 206  Bit Score: 45.87  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 187 NELVHKLRAK--GSFVALHLRYEmdmlAFSGCNHGLSPEEAEELKKMRYAypwwrDKEIDSQAKRLQGLCPLTPeeaslv 264
Cdd:cd11296    60 DRFVRKLLGLpgGPYLAVHLRRG----DFEVECCHLAKWMGEYLEECLLS-----AEEIAEKIKELMAERKLKV------ 124
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1060099076 265 lkalgfqkdalIYIAAGEiYGGDRRLEPLRAAFPNLVRKVMLLNSEVLRQFQNHSS-QMAALDFIVSTASDVFIPTFDGN 343
Cdd:cd11296   125 -----------VYVATDE-ADREELREELRKAGIRVVTKDDLLEDAELLELEKLDNyLLSLVDQEICSRADVFIGTGFST 192
                         170
                  ....*....|....
gi 1060099076 344 MAKLVEGHRRFLGF 357
Cdd:cd11296   193 FSSNVALLRRWRGK 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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