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Conserved domains on  [gi|918410125|ref|NP_001234032|]
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chlorophyll a-b binding protein 6A, chloroplastic [Solanum lycopersicum]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 10010628)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-245 0e+00

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


:

Pssm-ID: 177717  Cd Length: 243  Bit Score: 495.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125   1 MASNTLMSCGIPAVCPSFLSSTKSKFAAAMPVSvgATNSMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDPLGLGEVPAN 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASSVPLP--NANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPEN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME 160
Cdd:PLN00099  79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 161 KDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
Cdd:PLN00099 159 KDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238


                 ....*
gi 918410125 241 KGIFP 245
Cdd:PLN00099 239 RSISP 243
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-245 0e+00

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 495.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125   1 MASNTLMSCGIPAVCPSFLSSTKSKFAAAMPVSvgATNSMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDPLGLGEVPAN 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASSVPLP--NANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPEN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME 160
Cdd:PLN00099  79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 161 KDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
Cdd:PLN00099 159 KDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238


                 ....*
gi 918410125 241 KGIFP 245
Cdd:PLN00099 239 RSISP 243
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
56-209 4.99e-57

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 179.04  E-value: 4.99e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125   56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIpgGQATYLGQPVP 135
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEA--GAVALHAQSVP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  136 wgtlPTILAIEFLAIAFVEHQRSMEK------DSEKKKYPGG-AFDPLGYS-KDPAKFEELKVKEIKNGRLALLAFVGFC 207
Cdd:pfam00504  80 ----TLLALQILLLMGFLELARWQGGkapglgGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFF 155


                  ..
gi 918410125  208 VQ 209
Cdd:pfam00504 156 VQ 157
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-245 0e+00

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 495.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125   1 MASNTLMSCGIPAVCPSFLSSTKSKFAAAMPVSvgATNSMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDPLGLGEVPAN 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASSVPLP--NANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPEN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME 160
Cdd:PLN00099  79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 161 KDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
Cdd:PLN00099 159 KDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238


                 ....*
gi 918410125 241 KGIFP 245
Cdd:PLN00099 239 RSISP 243
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
56-209 4.99e-57

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 179.04  E-value: 4.99e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125   56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIpgGQATYLGQPVP 135
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEA--GAVALHAQSVP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  136 wgtlPTILAIEFLAIAFVEHQRSMEK------DSEKKKYPGG-AFDPLGYS-KDPAKFEELKVKEIKNGRLALLAFVGFC 207
Cdd:pfam00504  80 ----TLLALQILLLMGFLELARWQGGkapglgGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFF 155


                  ..
gi 918410125  208 VQ 209
Cdd:pfam00504 156 VQ 157
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 49-236 8.47e-57

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 182.68  E-value: 8.47e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  49 WMPGQPRPSYLDGSAPGDFGFDPLGLGEVPA-------------------------------------------NLERYK 85
Cdd:PLN00187  55 WFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEylqfdldsldqnlaknlagdvigtrteaseikstpfqpysevfGLQRFR 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  86 ESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGgqATYLGQPVPWgTLPTILAIEFLAIAFVEHQRSMEKDSEK 165
Cdd:PLN00187 135 ECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEK 211

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 918410125 166 KKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNIGD 236
Cdd:PLN00187 212 RLYPGGKfFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAV-QAAATGKGPLNNWATHLSDPLHTTIID 282
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 12-234 5.66e-53

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 171.64  E-value: 5.66e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  12 PAVCPS-FLSSTKSKFAAAMPVSVGATNSMSRFSMSA---DWMPGQPRPSYLDGSAPGDFGFDPLGLGEVPANLERYKES 87
Cdd:PLN00101  15 PCSSKSrFLSGSSSKLNRELSFKPMPSSATRSFKVEAkkgEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  88 ELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWaaIPGGQATYlgqpvpWGTLPTILAIEFLAIAFVEHQR--------SM 159
Cdd:PLN00101  95 ELVNGRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRwqdiknpgSV 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 160 EKDSEKKK---------YPGGAFDPLGYskdpAKFEELKVKEIKNGRLALLAFVGFCVQQSAyPGTGPLENLATHLADPW 230
Cdd:PLN00101 167 NQDPIFKQyslppnevgYPGGIFNPLNF----APTEEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPW 241


                 ....
gi 918410125 231 HNNI 234
Cdd:PLN00101 242 HNTI 245
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 12-234 9.17e-53

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 171.21  E-value: 9.17e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  12 PAVCPSFLSSTKSKFAAAMPVSvgatnSMSRfsmsADWMPGQPRPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIH 91
Cdd:PLN00147  20 SSHCTRSISSVAASSGGINPVV-----AQER----PTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVH 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  92 CRWAMLAVPGIIVPEALGLGNWVKAQEWaaIPGGQATYlgqpvPWGTLPTILAIEFLAIAFVEHQRSME---KDSEKKK- 167
Cdd:PLN00147  91 SRFAMAGVAGILFTDLLRVTGIRNLPVW--YEAGAVKF-----EFASTRTLFVVQLLLMGFAETKRYMDfvsPGSQAKEg 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 168 ---------------YPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWH 231
Cdd:PLN00147 164 sffgleaaleglepgYPGGPlFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFV-QASVTHTGPIDNLLTHLSDPWH 242


                 ...
gi 918410125 232 NNI 234
Cdd:PLN00147 243 KTI 245
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 21-234 6.24e-52

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 169.03  E-value: 6.24e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  21 STKSKFAAAMPVSVGATNSMSRFSMSAD-----WMPGQPRPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWA 95
Cdd:PLN00097  14 KQKSRTVRPRGVASKARASRGPGAVAAAadrptWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWA 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  96 MLAVPGIIVPEAL------GLGNWVKAqewaaipggqATYLGQPVPWGTLptiLAIEFLAIAFVEHQR--------SMEK 161
Cdd:PLN00097  94 MLGLAGCVAPELLtkigmaDLPNWIDA----------AKWDGYWAGAGPL---FFIQMAMFNWAEIRRwqdmkapgSMNE 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 162 D----------SEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWH 231
Cdd:PLN00097 161 DplfgankgdtNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCA-QAIQTGTGPVDNLFSHLADPGH 239


                 ...
gi 918410125 232 NNI 234
Cdd:PLN00097 240 NGI 242
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 52-233 5.00e-48

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 159.53  E-value: 5.00e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  52 GQPrPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPG 124
Cdd:PLN00025  60 GET-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLakngvkfGEAVWFKAGAQIFSEG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 125 GqATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLA 199
Cdd:PLN00025 139 G-LDYLGNPslVHAQSILAIWACQVVLMGAVEGYRvngGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLA 217

                        170       180       190
                 ....*....|....*....|....*....|....
gi 918410125 200 LLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 233
Cdd:PLN00025 218 MFSMFGFFV-QAIVTGKGPLENLADHLADPVANN 250
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 42-234 1.54e-47

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 157.73  E-value: 1.54e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  42 RFSMSAD--WMPGQPRPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWvkaqeW 119
Cdd:PLN00100  29 RVAARARpmWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKF-----W 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 120 AAipgGQATYlgqpvPWgTLPTILAIEFLAIAFVEHQRS--MEKDSEKKKYPGGAFDPLGyskdpAKFEELKVKEIKNGR 197
Cdd:PLN00100 104 EA---GAEKY-----GL-DLQTLVLIQVVVMAVLEAARYrgFMKTGESGVLSFFPFDPTG-----MDSPEMKVKEVKNGR 169

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 918410125 198 LALLAFVGFCvQQSAYPGTGPLENLATHLADPWHNNI 234
Cdd:PLN00100 170 LAMLAFLGMV-SQYAVTGKSPLEGLKAHMANPGHVNI 205
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 56-234 6.08e-47

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 158.43  E-value: 6.08e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQE-------WAAIPGGQAT 128
Cdd:PLN00171 120 PDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEpvwwrvgYAKLQGDTLD 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 129 YLGQP---VPWGTLPTILAI-EFLAIAFVEHQRSMEKDSEKK---------KYPGGA-FDPLGYSKDPAKFEELKVKEIK 194
Cdd:PLN00171 200 YLGIPglhIAGSQGVIVIAIcQALLMVGPEYARYCGIEALEPlgiylpgdiNYPGGAlFDPLGLSKDPVAFEDLKVKEIK 279

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 918410125 195 NGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 234
Cdd:PLN00171 280 NGRLAMVAWLGFYI-QAAVTGKGPVQNLVDHLSDPLHNNL 318
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 49-234 2.62e-43

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 147.37  E-value: 2.62e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  49 WMPGQPRPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWaaIPGGQAT 128
Cdd:PLN00098  65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSW--YDAGARE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 129 YLGQPVpwgtlpTILAIEFLAIAFVEHQRSME-----------KDSEKKK------YPGGA-FDPLGYSK-DPAKFEELK 189
Cdd:PLN00098 143 YFADPT------TLFVVQMVLMGWAEGRRWADlikpgcvdiepKLPNKTNpkpdvgYPGGLwFDPMMWGRgSPEPVMVLR 216

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 918410125 190 VKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 234
Cdd:PLN00098 217 TKEIKNGRLAMLAFVGFCF-QAVYTGEGPIENLMAHLADPGHCNV 260
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 49-234 9.26e-43

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 145.76  E-value: 9.26e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  49 WMPGQPRPSYLDGSAPGDFGFDPLGLGEvPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQewAAI 122
Cdd:PLN00048  45 WFASKQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEpqwlayGEVINGRFAMLGAAGAIAPEILGKAGLIPQE--TAL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125 123 PGGQATYL---GQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKD-----------SEKKKYPGGA-FDPLGYS 179
Cdd:PLN00048 122 PWFQSGVIppaGTYDYWADPYTLFVLEMALMGFAEHRRaqdyykpgSMGKQyflglekglggSGNPAYPGGPfFNPLGFG 201

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 918410125 180 KDPAKFEELKVKEIKNGRLALLAFVGfCVQQSAYPGTGPLENLATHLADPWHNNI 234
Cdd:PLN00048 202 KDEKSMKELKLKEVKNGRLAMLAILG-YFIQALVTGVGPFQNLLDHLADPVNNNV 255
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 17-206 1.33e-27

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 106.17  E-value: 1.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  17 SFLSSTKSkfAAAMPVSVGATNSMSRFSMSA--------DWMPGQP------RPSYLDGSAPGDFGFDPLGLGEVPANLE 82
Cdd:PLN00170  16 SFLTGGKR--SLALLVGTGAAKVGARTLLVVaaaaqpkkSWIPAVKgggnlvDPEWLDGSLPGDYGFDPLGLGKDPAFLK 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  83 RYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAqewAAIPGGQAtylgqPVPWGTLptiLAIEFLAIAFVEHQR----- 157
Cdd:PLN00170  94 WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRwvdff 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 918410125 158 -----SME------KDSEK-------KKYPGGA-FDPLG---------YSKDPAKFEELKVKEIKNGRLALLAFVGF 206
Cdd:PLN00170 163 npdsqSVEwatpwsRTAENfanatglQGYPGGKfFDPLGlagtvkdgvYIPDFEKLERLKLAEIKHARLAMVAMLIF 239
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 19-217 1.31e-18

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 81.27  E-value: 1.31e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  19 LSSTKSKFAAAMPVSVGATNSMSRFSMSADWMPGqprpsYLDGSA--------PGDFGFDPLGLGE-VPANLERYKESEL 89
Cdd:PLN00089   6 FAALCASAAAAAPAQKSRTRPATPTAAAEDDCPG-----AIGFAAkefmfigkTGSKKFDPLGLAEkVEEFLPWFRESEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  90 IHCRWAMLAVPGIIVPEALGLGNwvKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEF--LAIAFvehqRSMEKDSEKKK 167
Cdd:PLN00089  81 KHGRAAMLAVAGFIAPDFVRIPG--EAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFvdLAVSA----PAAAAAAEFDR 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 918410125 168 YPGG-AFDPLG-YSKDPAKFEELKVKEIKNGRLALLAfVGFCVQQSAYPGTG 217
Cdd:PLN00089 155 TPGDfGFDLLAlYPKDAAKMEKKKDKELKNGRLAMVA-IGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
50-104 2.29e-09

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 54.62  E-value: 2.29e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 918410125   50 MPGQPRPSYLDGSAPGDFGFDPLGL-GEVPANLERYKESELIHCRWAMLAVPGIIV 104
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLaKKDPETLAELKLKELKNGRLAMIAFLGFFV 156
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
173-220 4.46e-09

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 53.85  E-value: 4.46e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 918410125  173 FDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 220
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNE 62
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 169-216 5.46e-08

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 51.67  E-value: 5.46e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 918410125 169 PGGAFDPLGYSK--DPAKFEELKVKEIKNGRLALLAFVGFCVQQSAY--PGT 216
Cdd:PLN00120  43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIrlPGD 94
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 13-210 7.79e-06

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 45.50  E-value: 7.79e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  13 AVCPSFLSSTkSKFAAAMPVSvgATNSMSRFSMSADWMPGQPrpsyldgsaPGDFgFDPLGL--GEVPANLERYKESELI 90
Cdd:PLN00120   4 ALFASLIASA-AAFAPAQVAK--ARTSVATNMAFENELGAQA---------PLGF-FDPLGLvdDGDQEKFDRLRYVEIK 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918410125  91 HCRWAMLAVPGIIVPEAlGL---GNW-VKAQEWAAIPGGQATYLGQPVPwGTLPTILAIEFLAIAFVehqrsmeKDSE-K 165
Cdd:PLN00120  71 HGRISMLAVVGYLVTEA-GIrlpGDIdYSGTSFSDIPNGFAALDAIPTA-GLLQILAFIGFLELAVM-------KDITgE 141

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 918410125 166 KKYPG----GAFDpLGYSKDPakfEELKVK----EIKNGRLALLAFVGFCVQQ 210
Cdd:PLN00120 142 GEFVGdfrnGYID-FGWDSFD---EETKLKkraiELNQGRAAQMGILALMVHE 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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