|
Name |
Accession |
Description |
Interval |
E-value |
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
1-144 |
4.50e-45 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 161.75 E-value: 4.50e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 1 MKQQALTEFEAYKHRVEDMQLCAEAQHVQRIVTMSREVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQE 80
Cdd:pfam15665 68 MKRQALTEFEQYKRRVEERELKAEAEHRQRVVELSREVEEAKRAFEEKLESFEQLQAQFEQEKRKALEELRAKHRQEIQE 147
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 154350244 81 LLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFYERELD 144
Cdd:pfam15665 148 LLTTQRAQSASSLAEQEKLEELHKAELESLRKEVEDLRKEKKKLAEEYEQKLSKAQAFYERELE 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
241-841 |
1.38e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 241 VESELAAARERLQQQAS---------------DLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLR 305
Cdd:COG1196 194 ILGELERQLEPLERQAEkaeryrelkeelkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 306 SKTQSLDEEQKQQILELEKKVNEAKRTQQEyyERELKNLQSRLEEEVTQLNEAHSKTLEELAwkhhmaieavhsnairdk 385
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQD--IARLEERRRELEERLEELEEELAELEEELE------------------ 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 386 kKLQMDLEEQhNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQN 465
Cdd:COG1196 334 -ELEEELEEL-EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 466 ELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREELRLQhEEDKK 545
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE-LAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 546 SAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHK 625
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 626 slkeAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHRESMEGFRIEMEQELQTLRFELEDEGKAMLASLRSEL 705
Cdd:COG1196 571 ----AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 706 NHQHAAAIDLLRHNhhQELAAAKMELERSIDISRRQSKEHICRITDLQEELRHREHHISELDKEVQHLHENISALTKELE 785
Cdd:COG1196 647 REVTLEGEGGSAGG--SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 154350244 786 FKGKEILRIRSESNQQiRLEEMEEKYLMRESKPEDIQMITELKAMLTERDQIIKKL 841
Cdd:COG1196 725 ALEEQLEAEREELLEE-LLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
110-706 |
3.62e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 3.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 110 LNKMLEELRLERKK------LIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIG 183
Cdd:COG1196 198 LERQLEPLERQAEKaeryreLKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 184 KLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLvlka 263
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL---- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 264 shigmlqatqmtqevtiKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEyyERELKN 343
Cdd:COG1196 354 -----------------EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA--EEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 344 LQSRLEEEVTQLNEAHSKTLEElawkhhmaiEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKEvLED 423
Cdd:COG1196 415 RLERLEEELEELEEALAELEEE---------EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE-LLE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 424 KLNTANQEIGHLQDMVRKSEQGLGSAegLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMK 503
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEGV--KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 504 EE----------EKLKVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDL 573
Cdd:COG1196 563 IEylkaakagraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 574 LNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHL 653
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 154350244 654 QQKHSAELQSLKDAHRESMEGFRIEMEQELQTLRFELEDEG--KAMLASLRSELN 706
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEelERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
43-580 |
7.66e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 7.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 43 RKFEEKLRsfgQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELhRMEVESLNKMLEELRLERK 122
Cdd:COG1196 216 RELKEELK---ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-RLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 123 KL---IEDYEGKLNKAQ---SFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEA 196
Cdd:COG1196 292 ELlaeLARLEQDIARLEerrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 197 GSLLDKCQKL----------QTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHI 266
Cdd:COG1196 372 AELAEAEEELeelaeelleaLRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 267 GMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQ------------ 334
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavlig 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 335 --EYYERELKN-LQSRLEEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQ 411
Cdd:COG1196 532 veAAYEAALEAaLAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 412 QELENL--KEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLnvEGELE 489
Cdd:COG1196 612 DARYYVlgDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL--AERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 490 QERQQHEETIAAMKEEEKLKVDKMAHDLEIKwTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKK 569
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEE-LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
570
....*....|.
gi 154350244 570 VEDLLNQISLL 580
Cdd:COG1196 769 LERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-497 |
1.02e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 169 KEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAA 248
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 249 RERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNE 328
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 329 AKRTQQEyyereLKNLQSRLEEEVTQLNEAHSKTleelawKHHMAIEAVHSNAIRDKKKLQMDLEEQHNkdklNLEEDKN 408
Cdd:TIGR02168 847 IEELSED-----IESLAAEIEELEELIEELESEL------EALLNERASLEEALALLRSELEELSEELR----ELESKRS 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 409 QLQQELENLKEVLED---KLNTANQEIGHLQDMVRKSEQ-GLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNV 484
Cdd:TIGR02168 912 ELRRELEELREKLAQlelRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAA 991
|
330
....*....|...
gi 154350244 485 EGELEQERQQHEE 497
Cdd:TIGR02168 992 IEEYEELKERYDF 1004
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
29-505 |
2.40e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 29 QRIVTMSREVEEIRRKFEEKLRSFGQL--QVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRmE 106
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE-E 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 107 VESLNKMLEELRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTA----------------ESLQASKEKEADLRKE 170
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAqleeleeaeeallerlERLEEELEELEEALAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 171 FQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARE 250
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 251 RLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAK 330
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 331 RTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAWKHHMAIE-AVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQ 409
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRrAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 410 LQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELE 489
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
490
....*....|....*.
gi 154350244 490 QERQQHEETIAAMKEE 505
Cdd:COG1196 753 LEELPEPPDLEELERE 768
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
155-862 |
9.61e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 9.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 155 ESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMAL 234
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 235 -------LSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSK 307
Cdd:TIGR02168 322 eaqleelESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 308 TQSLDEEQKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKK 387
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 388 LQmdlEEQHNKDKLNLEEDKNQLQQELENLKEVLeDKLNTANQEIGHLQDMVrKSEQGLGSA--EGLIASLQDSQERLQN 465
Cdd:TIGR02168 482 RE---LAQLQARLDSLERLQENLEGFSEGVKALL-KNQSGLSGILGVLSELI-SVDEGYEAAieAALGGRLQAVVVENLN 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 466 ELDLTKDSLKET-------------KDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDL--EIKWTENLRQ--- 527
Cdd:TIGR02168 557 AAKKAIAFLKQNelgrvtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNale 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 528 ECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQ 607
Cdd:TIGR02168 637 LAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 608 RLTQELEELEEQHQQRHKslkeahvLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAhRESMEGFRIEMEQELQTLR 687
Cdd:TIGR02168 717 LRKELEELSRQISALRKD-------LARLEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAEAEIEELE 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 688 FELEdEGKAMLASLRSELNHQHAAaidllrhnhHQELAAAKMELERSIDISRRQSKEHICRITDLQEELRHREHHISELD 767
Cdd:TIGR02168 789 AQIE-QLKEELKALREALDELRAE---------LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 768 KEVQHLHENISALTKELEFKGKEI-------------LRIRSESNQQIRLEEMEEKYLMRESKPEDIQMITELKAMLTER 834
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERasleealallrseLEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
730 740
....*....|....*....|....*...
gi 154350244 835 DQIIKKLIEDnkfYQLELVNRETNFNKV 862
Cdd:TIGR02168 939 DNLQERLSEE---YSLTLEEAEALENKI 963
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
36-562 |
1.45e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 36 REVEEIRRKFEEKLRSFGQLQVQFE-KDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQ----EKAEELHRmEVESL 110
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFARRQAAIKaEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKaeeaKKADEAKK-KAEEA 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 111 NKMLEELRL---ERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAES---LQASKEKEADLRK----EFQGQEAILRK 180
Cdd:PTZ00121 1328 KKKADAAKKkaeEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAkkkADAAKKKAEEKKKadeaKKKAEEDKKKA 1407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 181 TIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAEN--NVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASD 258
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEakKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 259 LVLKASHIGMlQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDE-EQKQQILELEK-----KVNEAKRT 332
Cdd:PTZ00121 1488 AKKKAEEAKK-KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaEEKKKADELKKaeelkKAEEKKKA 1566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 333 QQEYYERELKNLQSRLEEEVTQLNEAHSKTL------------EELAWKHHMAIEAVHSNAIRDKKKLQMDL-----EEQ 395
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVmklyeeekkmkaEEAKKAEEAKIKAEELKKAEEEKKKVEQLkkkeaEEK 1646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 396 HNKDKLNLEEDKNQLQQELENLKEVLEDKlntANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLK 475
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKK---KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 476 ETKDALLNVE---GELEQERQQHEEtiAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREELRlqhEEDKKSAMSQLL 552
Cdd:PTZ00121 1724 AEEENKIKAEeakKEAEEDKKKAEE--AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD---EEDEKRRMEVDK 1798
|
570
....*....|
gi 154350244 553 QLKDREKNAA 562
Cdd:PTZ00121 1799 KIKDIFDNFA 1808
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
228-841 |
3.50e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.54 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 228 KEGEMALLSKHKEVESELAAARERLQQQASDLvlkASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSK 307
Cdd:pfam12128 268 KSDETLIASRQEERQETSAELNQLLRTLDDQW---KEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 308 TQSLDEEQKQQILELEKKVN---EAKRTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAwKHHMAIEAVHsnaird 384
Cdd:pfam12128 345 DQEQLPSWQSELENLEERLKaltGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARD-RQLAVAEDDL------ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 385 kKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQ--EIGHLQDMVRKSEQGLGSAEGLIASLQDSQER 462
Cdd:pfam12128 418 -QALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELllQLENFDERIERAREEQEAANAEVERLQSELRQ 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 463 LQNELDLTKDSLKETKDALLNVEGELEQERQQ--------HE--ETIAAMKEEEKLKVDKMAH----DLE-IKWTENLRQ 527
Cdd:pfam12128 497 ARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtlLHflRKEAPDWEQSIGKVISPELlhrtDLDpEVWDGSVGG 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 528 ECSKLREELRLQHEEDKKS-AMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEiqlsQSQTSLQQLQAQFTQER 606
Cdd:pfam12128 577 ELNLYGVKLDLKRIDVPEWaASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELE----KASREETFARTALKNAR 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 607 QRLTQELEELEEQHQQRHKSLKEAHVLAfQTMEEEKEKEQRALENhlqqKHSAELQSLKDAHRESmegfRIEMEQELQtl 686
Cdd:pfam12128 653 LDLRRLFDEKQSEKDKKNKALAERKDSA-NERLNSLEAQLKQLDK----KHQAWLEEQKEQKREA----RTEKQAYWQ-- 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 687 rfELEDEGKAMLASLRSEL---NHQHAAAIDLLRHNHHQELAAAKMELERSIDISrRQSKEHICRItdlqEELRHREHHI 763
Cdd:pfam12128 722 --VVEGALDAQLALLKAAIaarRSGAKAELKALETWYKRDLASLGVDPDVIAKLK-REIRTLERKI----ERIAVRRQEV 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 764 SELDKEVQH--LHENiSALTKELEFKGKEILRIRSESNQQIRLEEMEEKYLMRESKPEDIQMItELKAMLTERDQIIKKL 841
Cdd:pfam12128 795 LRYFDWYQEtwLQRR-PRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQV-RLSENLRGLRCEMSKL 872
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-423 |
1.08e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 75 RREIQELLKSQQDHSASVNKGQEKAEELhRMEVESLNKMLEELRlerkKLIEDYEGKLNKAQSFYERELdtlKRSQLFTA 154
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAEL-RKELEELEEELEQLR----KELEELSRQISALRKDLARLE---AEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 155 ESLQASKEkeadlRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMAL 234
Cdd:TIGR02168 748 RIAQLSKE-----LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 235 LSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEksrvnerLSQLEEERAFLRSKTQSLDEE 314
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE-------LEALLNERASLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 315 QKQ---QILELEKKVNEAK------RTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAwKHHMAIEAVHSNAIRDK 385
Cdd:TIGR02168 896 LEElseELRELESKRSELRreleelREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAE-ALENKIEDDEEEARRRL 974
|
330 340 350
....*....|....*....|....*....|....*...
gi 154350244 386 KKLQMDLEEQHNKDKLNLEEDKnQLQQELENLKEVLED 423
Cdd:TIGR02168 975 KRLENKIKELGPVNLAAIEEYE-ELKERYDFLTAQKED 1011
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
25-783 |
1.88e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 25 AQHVQRIVTMSREVEEIRRKFEEKLRSFGQL--QVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEEL 102
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLeqQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 103 hRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKE---ADLRKEFQGQEAILR 179
Cdd:TIGR02168 350 -KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErleDRRERLQQEIEELLK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 180 KTIGKLKTELQMVQDEAGSLLDkcqKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAArERLQQQASDL 259
Cdd:TIGR02168 429 KLEEAELKELQAELEELEEELE---ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 260 VLKASHIgMLQATQMTQevtIKDLESEKSRVNERLSQLEEerAFLRSKTQSL---DEEQKQQILELEKKVNEAKRTQQEY 336
Cdd:TIGR02168 505 SEGVKAL-LKNQSGLSG---ILGVLSELISVDEGYEAAIE--AALGGRLQAVvveNLNAAKKAIAFLKQNELGRVTFLPL 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 337 YERELKNLQSRLEEEVTQLNEAHS--KTLEELAWKHHMAIEAVHS---------NAIRDKKKL----------------- 388
Cdd:TIGR02168 579 DSIKGTEIQGNDREILKNIEGFLGvaKDLVKFDPKLRKALSYLLGgvlvvddldNALELAKKLrpgyrivtldgdlvrpg 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 389 --------QMDLEEQHNKDKL-NLEEDKNQLQQELENLK---EVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASL 456
Cdd:TIGR02168 659 gvitggsaKTNSSILERRREIeELEEKIEELEEKIAELEkalAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 457 QDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMKEEEKlKVDKMAHDLeikwtENLRQECSKLREEL 536
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-QIEQLKEEL-----KALREALDELRAEL 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 537 RLQHEEdkksAMSQLLQLKDREKNAARdsWQKKVEDLLNQISLLKQNLEiQLSQSQTSLQQLQAQFTQERQRLTQELEEL 616
Cdd:TIGR02168 813 TLLNEE----AANLRERLESLERRIAA--TERRLEDLEEQIEELSEDIE-SLAAEIEELEELIEELESELEALLNERASL 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 617 EEQHQQRHKSLKEAhvlafQTMEEEKEKEQRALENHLQqkhsaELQSLKDAHRESMEGFRIEMEQELQTLRFELEDEGKA 696
Cdd:TIGR02168 886 EEALALLRSELEEL-----SEELRELESKRSELRRELE-----ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 697 MLAslrselnhqHAAAIDLLRHNHHQELAAAKMELERSIDISRRQSKEhicrITDLQEELRHREHHISELDKEVQHLHEN 776
Cdd:TIGR02168 956 AEA---------LENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE----YEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
....*..
gi 154350244 777 ISALTKE 783
Cdd:TIGR02168 1023 IEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-494 |
2.36e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 2 KQQALTEFEAYKHRVEDMQLCAEAQHVQRIVTMSREVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQEL 81
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 82 LKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSfYERELDTLKRSQLftAESLQASK 161
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL-LEAALAELLEELA--EAAARLLL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 162 EKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVlqKQLDDAKEGEMALLSKHKEV 241
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV--EDDEVAAAAIEYLKAAKAGR 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 242 ESELAAARERLQQQASDLVLK-ASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTqsLDEEQKQQIL 320
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARgAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT--LAGRLREVTL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 321 ELEKkVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEEQHNKDK 400
Cdd:COG1196 652 EGEG-GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 401 LNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLgsaEGL-------IASLQDSQERLQnELDLTKDS 473
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI---EALgpvnllaIEEYEELEERYD-FLSEQRED 806
|
490 500
....*....|....*....|.
gi 154350244 474 LKETKDALLNVEGELEQERQQ 494
Cdd:COG1196 807 LEEARETLEEAIEEIDRETRE 827
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
217-537 |
4.70e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 217 VQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLEseksrvnERLSQ 296
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE-------EDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 297 LEEERAFLRSKTQSLDEEQKQQILELEKkvneakrtqqeyYERELKNLQSRLEEEVTQLNEAHSKTLEElawkHHMAIEA 376
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHK------------LEEALNDLEARLSHSRIPEIQAELSKLEE----EVSRIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 377 VHSNAIRDKKKLQMDLEeqhnkdklnLEEDKnqlQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASL 456
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKE---------YLEKE---IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 457 QDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQ---QHEETIAAMKEEEKLKVDKMAHDLEIKWT----ENLRQEC 529
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKrlsELKAKLEALEEELSEIEDPKGEDEEIPEEelslEDVQAEL 960
|
....*...
gi 154350244 530 SKLREELR 537
Cdd:TIGR02169 961 QRVEEEIR 968
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-659 |
1.10e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 283 LESEKSRVNERLSQLEEERAFLRSKTQSLDEE--QKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLneahS 360
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL----S 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 361 KTLEELAwkhhmaieavhsNAIRDKKKLQMDLEEqhnkdklnLEEDKNQLQQELENLK--------EVLEDKLNTANQEI 432
Cdd:TIGR02169 748 SLEQEIE------------NVKSELKELEARIEE--------LEEDLHKLEEALNDLEarlshsriPEIQAELSKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 433 GHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDk 512
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD- 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 513 mahdleikwtenLRQECSKLREELRLqheedkksamsqlLQLKDREKNAARDSWQKKVEDLLNQISLLKQNL-----EIQ 587
Cdd:TIGR02169 887 ------------LKKERDELEAQLRE-------------LERKIEELEAQIEKKRKRLSELKAKLEALEEELseiedPKG 941
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 588 LSQSQTSLQQLQAQFTQERQRLTQELE----------ELEEQHQQRHKSLKEAHvlafQTMEEEKEKEQRALENHLQQKH 657
Cdd:TIGR02169 942 EDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiQEYEEVLKRLDELKEKR----AKLEEERKAILERIEEYEKKKR 1017
|
..
gi 154350244 658 SA 659
Cdd:TIGR02169 1018 EV 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
35-328 |
3.42e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 3.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 35 SREVEEIRRKFEEKLRSFGQLQVQFE--KDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRM----EVE 108
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEelEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlshsRIP 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 109 SLNKMLEELRLERKKL---IEDYEGKLNKAQSFYE-------------RELDTLKRSQLFTAESLQASKEKEADLRKEFQ 172
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIearLREIEQKLNRLTLEKEylekeiqelqeqrIDLKEQIKSIEKEIENLNGKKEELEEELEELE 874
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 173 GQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESE-------- 244
Cdd:TIGR02169 875 AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsle 954
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 245 -LAAARERLQQQASDLvlkaSHIGMLqatqmtqevTIKDLESEKSRVNE---RLSQLEEERAFLRSKTQSLDEEQKQQIL 320
Cdd:TIGR02169 955 dVQAELQRVEEEIRAL----EPVNML---------AIQEYEEVLKRLDElkeKRAKLEEERKAILERIEEYEKKKREVFM 1021
|
....*...
gi 154350244 321 ELEKKVNE 328
Cdd:TIGR02169 1022 EAFEAINE 1029
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
36-827 |
6.26e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 6.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 36 REVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELhrmevESLNKMLE 115
Cdd:pfam02463 274 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEEL-----EKELKELE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 116 ELRLERKKLIEDYEGKLNKAqsfyERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDE 195
Cdd:pfam02463 349 IKREAEEEEEEELEKLQEKL----EQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 196 AGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMT 275
Cdd:pfam02463 425 KKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 276 QEVTIKDLESEKSRVNERLSQLEEERaflRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTql 355
Cdd:pfam02463 505 ARSGLKVLLALIKDGVGGRIISAHGR---LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARK-- 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 356 nEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHL 435
Cdd:pfam02463 580 -LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGL 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 436 QDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDS-LKETKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMA 514
Cdd:pfam02463 659 AEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRrQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 515 HDLEIKWTENlrQECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEIQLSQSQTS 594
Cdd:pfam02463 739 KLLKQKIDEE--EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAEL 816
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 595 LQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHREsMEG 674
Cdd:pfam02463 817 LEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE-EKE 895
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 675 FRIEMEQELQTLRFELEDEGKAMLASLRSELNHqhaaaIDLLRHNHHQELAAAKMELERSIDISRRQSKEHICRITDLQE 754
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEKENEIEERIKEEAE-----ILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKE 970
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 154350244 755 ELRHREHHISELDKEVQHLHENISALTKELEFKGKEILRIRSESNQQIRLEEMEEKYLMRESKPEDIQMITEL 827
Cdd:pfam02463 971 ELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELG 1043
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
36-548 |
9.18e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 9.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 36 REVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQaaHRREIQELLKSQQDHSASVNKGQEKAEELHRmEVESLNKMLE 115
Cdd:PRK03918 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEG--SKRKLEEKIRELEERIEELKKEIEELEEKVK-ELKELKEKAE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 116 ELRlERKKLIEDYEGKLNKAqsfyERELDTLKRSQLFTAESLQASKEKEADLrKEFQGQEAILRKTIGKLKTELQMVQdE 195
Cdd:PRK03918 294 EYI-KLSEFYEEYLDELREI----EKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLEELEERHELYE-E 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 196 AGSLLDKCQKLQTALAIaeNNVQVLQKQLDDAKEgemallsKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMT 275
Cdd:PRK03918 367 AKAKKEELERLKKRLTG--LTPEKLEKELEELEK-------AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 276 QEVTIKDLESE-----KSRVNERLSQLEEERAFLRSKTQSLDEEQKqqilELEKKVNEAKR-TQQEYYERELKNLQSRLE 349
Cdd:PRK03918 438 CPVCGRELTEEhrkelLEEYTAELKRIEKELKEIEEKERKLRKELR----ELEKVLKKESElIKLKELAEQLKELEEKLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 350 ----EEVTQLNEAHSKTLEELAwkhhmAIEAVHSNAIRDKKKLqmdleEQHNKDKLNLEEDKNQLQQELENLKEVLEDK- 424
Cdd:PRK03918 514 kynlEELEKKAEEYEKLKEKLI-----KLKGEIKSLKKELEKL-----EELKKKLAELEKKLDELEEELAELLKELEELg 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 425 ---LNTANQEIGHLQDMVRKSEQgLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAA 501
Cdd:PRK03918 584 fesVEELEERLKELEPFYNEYLE-LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE 662
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 154350244 502 MKEEEKLKVDKMAHDL--EIKWTENLRQECSKLREELRLQHEEDKKSAM 548
Cdd:PRK03918 663 ELREEYLELSRELAGLraELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
60-856 |
1.20e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 60 EKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFY 139
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 140 ERELDTLKRSQLFTAESLQASKEKEaDLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQV 219
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQE-EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 220 LQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEE 299
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 300 ERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAWKHHMAIEAvhs 379
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE--- 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 380 naiRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLqds 459
Cdd:pfam02463 497 ---ERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRAL--- 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 460 QERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREELRLQ 539
Cdd:pfam02463 571 TELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 540 HEEDKKSAMSqllQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQ 619
Cdd:pfam02463 651 GVSLEEGLAE---KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 620 HQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHRESMEGFRIEM-EQELQTLRFELEDEGKAML 698
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKvEEEKEEKLKAQEEELRALE 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 699 ASLRSELNHQHAAAIDLLRHNHHQELAAAKMELERSIDISRRQSKEHicRITDLQEELRHREHHISELDKEVQHLHENIS 778
Cdd:pfam02463 808 EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE--ELERLEEEITKEELLQELLLKEEELEEQKLK 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 779 ALTKELEFKGKEILRIRSESNQQIRLEEMEEKY--LMRESKPEDIQMITELKAMLTERDQIIKKLIEDNKFYQLELVNRE 856
Cdd:pfam02463 886 DELESKEEKEKEEKKELEEESQKLNLLEEKENEieERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRL 965
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
24-511 |
1.49e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 24 EAQHVQRIVTMSREVEEIRRKFEEKLRSFGQLQvQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQE---KAE 100
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAK-KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkKAD 1549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 101 ELHRmeVESLNKMLEELRLERKKLIE-DYEGKLNKAQSFYERELdtlKRSQLFTAESLQASKEKEADLRKEfqgQEAILR 179
Cdd:PTZ00121 1550 ELKK--AEELKKAEEKKKAEEAKKAEeDKNMALRKAEEAKKAEE---ARIEEVMKLYEEEKKMKAEEAKKA---EEAKIK 1621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 180 KTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASdl 259
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE-- 1699
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 260 vlkashigmlQATQMTQevtIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYER 339
Cdd:PTZ00121 1700 ----------EAKKAEE---LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 340 ELKNLQSRLEEEVTQLNEahsktLEELAWKHHMAIEavhsNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKE 419
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEE-----LDEEDEKRRMEVD----KKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVAD 1837
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 420 VLEDKLNTANQEIGHLQDMVRKSEQGlGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETI 499
Cdd:PTZ00121 1838 SKNMQLEEADAFEKHKFNKNNENGED-GNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIID 1916
|
490
....*....|..
gi 154350244 500 AAMKEEEKLKVD 511
Cdd:PTZ00121 1917 DKLDKDEYIKRD 1928
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
10-783 |
1.79e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 10 EAYKHRVEDMQLCAEAQHVQRIvtmsREVEEIRRKFEEKLRSFGQLQvqfeKDKRLALEDLQAAHRREIQELLKSQQdhs 89
Cdd:PTZ00121 1118 EEAKKKAEDARKAEEARKAEDA----RKAEEARKAEDAKRVEIARKA----EDARKAEEARKAEDAKKAEAARKAEE--- 1186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 90 asVNKGQE--KAEELHRmeVESLNKMLEELRLERKKLIEDyegklnkaqsfyERELDTLKRSQLFTAESLQASKEKEADL 167
Cdd:PTZ00121 1187 --VRKAEElrKAEDARK--AEAARKAEEERKAEEARKAED------------AKKAEAVKKAEEAKKDAEEAKKAEEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 168 RKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTAlaiaennvQVLQKQLDDAKEGEMALLSKHKEVESELAA 247
Cdd:PTZ00121 1251 NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA--------DEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 248 ARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDlESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVN 327
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD-EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 328 EAKRTQQEYyerelknlqSRLEEEVTQLNEAHSKTLEelawkhhmaieavhsnaIRDKKKLQMDLEEQHNKDKLnleEDK 407
Cdd:PTZ00121 1402 EDKKKADEL---------KKAAAAKKKADEAKKKAEE-----------------KKKADEAKKKAEEAKKADEA---KKK 1452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 408 NQLQQELENLKEVLEDKLNTanQEIGHLQDMVRKSEQGLGSAEGliASLQDSQERLQNELDLTKDSLKETKDALLNVEGE 487
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAKKADEAKKKAEE--AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 488 LEQERQQHEEtiaAMKEEEKLKVDkmahdlEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQ 567
Cdd:PTZ00121 1529 KAEEAKKADE---AKKAEEKKKAD------ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 568 KKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQR 647
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 648 ALENHLQQKHSAELQSLKDAHRESMEGFRIEMEQEL---QTLRFElEDEGKAMLASLRSELNHQHAAAIDLLRHNHHQEL 724
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKkkaEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 154350244 725 AAAKMELERSIDISRRQSKEHICRiTDLQEELRHREHHISELDKEVQHLHENISALTKE 783
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIRKEKEAVIE-EELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3-328 |
2.39e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 3 QQALTEFEAYKHRVEDMQLCAEAQHVQRIVTmSREVEEIRRKFEEKLRSFGQLQVQFEKDKRLAledlqAAHRREIQELL 82
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEEL-EERLEEAEEELAEAEAEIEELEAQIEQLKEEL-----KALREALDELR 809
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 83 KSQQDHSASVNKGQEKAEELHRmEVESLNKMLEELRLERKKLIEDYEgKLNKAQSFYERELDTLKRsqlfTAESLQASKE 162
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIE-SLAAEIEELEELIEELES----ELEALLNERA 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 163 KEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLddaKEGEMALLSKHKEVE 242
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALE 960
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 243 SELAAARERLQQQASDLVLKASHIGMLQATQMTQevtIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILEL 322
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE---YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDT 1037
|
....*.
gi 154350244 323 EKKVNE 328
Cdd:TIGR02168 1038 FDQVNE 1043
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-585 |
2.59e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 389 QMDLEEQHNKDKLNLEEDKNQLQQELENLK---EVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQN 465
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKkeeKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 466 ELDLTKDSLKETKDA------------LLNVE------------GELEQERQQHEETIAAMKEEekLKVDKMAHDLEIKW 521
Cdd:COG4942 98 ELEAQKEELAELLRAlyrlgrqpplalLLSPEdfldavrrlqylKYLAPARREQAEELRADLAE--LAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 154350244 522 TENLRQEcsKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLE 585
Cdd:COG4942 176 LEALLAE--LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
41-536 |
3.70e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 3.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 41 IRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRM--EVESLNKMLEELR 118
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleEHEERREELETLE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 119 LERKKLIEDYEGKLNKAQSFYER---------ELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTEL 189
Cdd:PRK02224 258 AEIEDLRETIAETEREREELAEEvrdlrerleELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 190 QMVQDEAGSLLDKCQKLQTalaiaennvqvlqkQLDDAKEgemallsKHKEVESELAAARERLQQQASDLVLKASHIGML 269
Cdd:PRK02224 338 QAHNEEAESLREDADDLEE--------------RAEELRE-------EAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 270 QATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDE--EQKQQILELEK--------------KVNEAKRTQ 333
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARErvEEAEALLEAGKcpecgqpvegsphvETIEEDRER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 334 QEYYERELKNL---QSRLEEEVTQLNEAHS------------KTLEELAWKHHMAIEAvHSNAIRDKKKLQMDLEEQHNK 398
Cdd:PRK02224 477 VEELEAELEDLeeeVEEVEERLERAEDLVEaedrierleerrEDLEELIAERRETIEE-KRERAEELRERAAELEAEAEE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 399 DKLNLEEDKNQLQQELENLKEvLEDKLNTANQEIGHLQDmVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETK 478
Cdd:PRK02224 556 KREAAAEAEEEAEEAREEVAE-LNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKR 633
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 154350244 479 DALLNVEGELE--------QERQQHEETIAAMKEE-EKLKVDKMAHDLEIKWTENLRQECSKLREEL 536
Cdd:PRK02224 634 ERKRELEAEFDearieearEDKERAEEYLEQVEEKlDELREERDDLQAEIGAVENELEELEELRERR 700
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
61-495 |
5.33e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 5.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 61 KDKRLALEDLQAAhRREIQELLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQ---S 137
Cdd:COG4717 64 RKPELNLKELKEL-EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEaelA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 138 FYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNV 217
Cdd:COG4717 143 ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 218 QVLQKQLDDAkEGEMALLSKHKEVESE-----LAAARERLQQQASDLVLKASHIG----------MLQATQMTQEVTIKD 282
Cdd:COG4717 223 EELEEELEQL-ENELEAAALEERLKEArllllIAAALLALLGLGGSLLSLILTIAgvlflvlgllALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 283 LESEKSRVNERLSQLEEER-AFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQL-NEAHS 360
Cdd:COG4717 302 KEAEELQALPALEELEEEElEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 361 KTLEELAWKHHMAIEAVhsNAIRDKKKLQMDLEEQHNKDKLNLE-EDKNQLQQELENLK---EVLEDKLNTANQEIGHLQ 436
Cdd:COG4717 382 EDEEELRAALEQAEEYQ--ELKEELEELEEQLEELLGELEELLEaLDEEELEEELEELEeelEELEEELEELREELAELE 459
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 154350244 437 DMVRKSEQglgsaEGLIASLQDSQERLQNEL-DLTKD--SLKETKDALLNVEGELEQERQQH 495
Cdd:COG4717 460 AELEQLEE-----DGELAELLQELEELKAELrELAEEwaALKLALELLEEAREEYREERLPP 516
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-841 |
6.83e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 6.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 2 KQQALTEFEAYKHRVEDMQLCaeaqhvqrIVTMSREVEEIRRKFEEKLRsFGQLQVQFEKDKRLALEDLQAAHRREIQEL 81
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLI--------IDEKRQQLERLRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 82 LKSQQDHSASVNKGQEKAEELhRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASK 161
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISEL-EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 162 EKEADLRKEFQGQEAilrkTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMAL---LSKH 238
Cdd:TIGR02169 322 ERLAKLEAEIDKLLA----EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYrekLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 239 KEVESELAAARERLQQQASDLVLKASHIGMlqatqmtqevtikDLESEKSRVNERLSQLEEERAFLRSKTQSLdeEQKQQ 318
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNA-------------AIAGIEAKINELEEEKEDKALEIKKQEWKL--EQLAA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 319 ILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLN-----EAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLE 393
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARaseerVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 394 -EQHNKDKLNLEEDKNQLQQELENLKEVledKLNTAN-QEIGHLQDMVRKSEQG-LGSAEGLIASLQDSQERLQNEL--- 467
Cdd:TIGR02169 543 vAAGNRLNNVVVEDDAVAKEAIELLKRR---KAGRATfLPLNKMRDERRDLSILsEDGVIGFAVDLVEFDPKYEPAFkyv 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 468 ---DLTKDSLKETKDALLNV-----EGELEQER------QQHEETIAAMKEEEKLKVDKMAHDLEikwteNLRQECSKLR 533
Cdd:TIGR02169 620 fgdTLVVEDIEAARRLMGKYrmvtlEGELFEKSgamtggSRAPRGGILFSRSEPAELQRLRERLE-----GLKRELSSLQ 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 534 EELRLQheedkKSAMSQLLQLKDREknaardswQKKVEDLLNQISLLKQNLEIQLSQSQTSlqqlqaqftQERQRLTQEL 613
Cdd:TIGR02169 695 SELRRI-----ENRLDELSQELSDA--------SRKIGEIEKEIEQLEQEEEKLKERLEEL---------EEDLSSLEQE 752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 614 EELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHREsMEGFRIEMEQELQ--TLRFELE 691
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR-IEARLREIEQKLNrlTLEKEYL 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 692 DEGKAMLASLRSELNHQHAAaidllRHNHHQELAAAKMELERSIDISRRQSKEHICRITDLQEELRHREHHISELDKEVQ 771
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKS-----IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 772 HLHENISALTKELEfkgkeiLRIRSESNQQIRLEEMEEKYLMRESKPEDIQMITELKAMLTERDQIIKKL 841
Cdd:TIGR02169 907 ELEAQIEKKRKRLS------ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
26-806 |
9.45e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 9.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 26 QHVQRIVT-MSREVEEIRRKFEEKlrsfGQLQVQFEKDKRLALEDLQAahrrEIQELlKSQQDHSASVNKGQEKAEELHR 104
Cdd:pfam15921 74 EHIERVLEeYSHQVKDLQRRLNES----NELHEKQKFYLRQSVIDLQT----KLQEM-QMERDAMADIRRRESQSQEDLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 105 MEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFYERELDTLK--RSQLFTAESLQASKEKEADLRK--EFQGQEAILRK 180
Cdd:pfam15921 145 NQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQeiRSILVDFEEASGKKIYEHDSMStmHFRSLGSAISK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 181 TIGKLKTELQMVQdeaGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEgemALLSKHkevESELAAarerLQQQASDLV 260
Cdd:pfam15921 225 ILRELDTEISYLK---GRIFPVEDQLEALKSESQNKIELLLQQHQDRIE---QLISEH---EVEITG----LTEKASSAR 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 261 LKASHIgmlqatQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAK------RTQQ 334
Cdd:pfam15921 292 SQANSI------QSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANselteaRTER 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 335 EYYERELKNLQSRLEEEVTQLNeahsKTLEELAWKHHmaieavhsnaiRDKKKLQMDLEEQHNKDKLNLE-EDKNQLQQE 413
Cdd:pfam15921 366 DQFSQESGNLDDQLQKLLADLH----KREKELSLEKE-----------QNKRLWDRDTGNSITIDHLRRElDDRNMEVQR 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 414 LENLKEVLEDKlntANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQN---ELDLTKDSLKETKDALLNVEGELEQ 490
Cdd:pfam15921 431 LEALLKAMKSE---CQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKvveELTAKKMTLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 491 ERQQHEET---IAAMKEEEKLKVDKMAH-DLEIKWTENLRQECsklrEELRLQHEEDKK---------SAMSQLLQLKDR 557
Cdd:pfam15921 508 KERAIEATnaeITKLRSRVDLKLQELQHlKNEGDHLRNVQTEC----EALKLQMAEKDKvieilrqqiENMTQLVGQHGR 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 558 EKNAARDSwQKKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQerqrLTQELEELEEQHQQRHKSLKEAhvlafqt 637
Cdd:pfam15921 584 TAGAMQVE-KAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD----LELEKVKLVNAGSERLRAVKDI------- 651
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 638 meeekEKEQRALENHLQQKHSaELQSLKDAHRESMEGFRIEMEqELQTLRFELedegKAMLASLRSELNHQHAAAIDLLR 717
Cdd:pfam15921 652 -----KQERDQLLNEVKTSRN-ELNSLSEDYEVLKRNFRNKSE-EMETTTNKL----KMQLKSAQSELEQTRNTLKSMEG 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 718 HNHHQELAAakMELERSIDISRRQskehicrITDLQEELRHREHHISELDKEVQHLHENISALTKELEFKGKEILRIRSE 797
Cdd:pfam15921 721 SDGHAMKVA--MGMQKQITAKRGQ-------IDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
810
....*....|...
gi 154350244 798 ----SNQQIRLEE 806
Cdd:pfam15921 792 levlRSQERRLKE 804
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
151-357 |
1.10e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 151 LFTAESLQASKEKEADLRKEFQGQEAILRKT---IGKLKTELQMVQDEAGSLLDKCQkLQTALAIAENNVQVLQKQLDDA 227
Cdd:PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAqaeLEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 228 KEGEMALLSKHKEVESELAAARERLQQ--------QASDLVLKASHIGMLQATQ-------------MTQEVTIKDL-ES 285
Cdd:PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQirnllkggKVGGKALRPSQRVLLQAEQallnaqndlqrksLEGNTQLQDLlQK 227
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 154350244 286 EKSRVNERLSQLEEERAFLR----SKTQSLDEEQKQQILELEKKvneAKRTQQEYYEREL-KNLQ--SRLEEEVTQLNE 357
Cdd:PRK11281 228 QRDYLTARIQRLEHQLQLLQeainSKRLTLSEKTVQEAQSQDEA---ARIQANPLVAQELeINLQlsQRLLKATEKLNT 303
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
349-534 |
1.30e-04 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 45.81 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 349 EEEVTQLNEAHSKTLEELAWKHHMAIEAV--HSNAIRDKKKLQmdLEEQHNkdklnLEEDKNQLQQELENLKEVLEDKLN 426
Cdd:pfam10168 531 QECLQLLSRATQVFREEYLKKHDLAREEIqkRVKLLKLQKEQQ--LQELQS-----LEEERKSLSERAEKLAEKYEEIKD 603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 427 taNQEighlqDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQheetIAAMKEEE 506
Cdd:pfam10168 604 --KQE-----KLMRRCKKVLQRLNSQLPVLSDAEREMKKELETINEQLKHLANAIKQAKKKMNYQRYQ----IAKSQSIR 672
|
170 180
....*....|....*....|....*...
gi 154350244 507 KLKVDKMAHDLEIKWTENLRQECSKLRE 534
Cdd:pfam10168 673 KKSSLSLSEKQRKTIKEILKQLGSEIDE 700
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
90-348 |
1.53e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 90 ASVNKGQEKAEELHRM--EVESLNKMLEELRLERKKLIEDYEgKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADL 167
Cdd:COG4942 17 AQADAAAEAEAELEQLqqEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 168 RKEFQGQEAILRKTIGKLkteLQMVQDEAGSLLDKCQKLQTALAIAEnnvqvLQKQLDDAKEGEMALLSKHKEvesELAA 247
Cdd:COG4942 96 RAELEAQKEELAELLRAL---YRLGRQPPLALLLSPEDFLDAVRRLQ-----YLKYLAPARREQAEELRADLA---ELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 248 ARERLQQQASDLvlkashigmlQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVN 327
Cdd:COG4942 165 LRAELEAERAEL----------EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
250 260
....*....|....*....|.
gi 154350244 328 EAKRTQQEYYERELKNLQSRL 348
Cdd:COG4942 235 EAAAAAERTPAAGFAALKGKL 255
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
115-846 |
1.96e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 115 EELRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKT--ELQMV 192
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAqeEQLKK 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 193 QDEAGSLLDKCQKLQTALAIAENnvqvLQKQLDDAKEGE-MALLSKH-KEVESELAAARERLQQQASDLVLKASHIGMLQ 270
Cdd:TIGR00618 259 QQLLKQLRARIEELRAQEAVLEE----TQERINRARKAApLAAHIKAvTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHV 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 271 ATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQ-----KQQILELEKKVNEAKRTQQEYYERELKNLQ 345
Cdd:TIGR00618 335 KQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATIDT 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 346 SRLEEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEE--QHNKDKLNLEEDKNQLQQELENLKEVLED 423
Cdd:TIGR00618 415 RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQEsaQSLKEREQQLQTKEQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 424 KLntanQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMK 503
Cdd:TIGR00618 495 RL----LELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 504 EEEKLKVDKMAHDLEIkwtENLRQECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAArdswqkkvedlLNQISLLKQN 583
Cdd:TIGR00618 571 SFSILTQCDNRSKEDI---PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD-----------LQDVRLHLQQ 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 584 LEIQLSQSQTSLQQLQAQFTQERQRLtqeleeleeqhqqrhkslkeaHVLAFQTMEEEKEKEQRALENHLQQKhsaelqs 663
Cdd:TIGR00618 637 CSQELALKLTALHALQLTLTQERVRE---------------------HALSIRVLPKELLASRQLALQKMQSE------- 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 664 lkdahRESMEGFRIEMEQELQTLRFELEDEGKamlaslrselNHQHAAAIDLLRHNHHQELAAAKMELERSIDISRRQSK 743
Cdd:TIGR00618 689 -----KEQLTYWKEMLAQCQTLLRELETHIEE----------YDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 744 EHICRITDLQEELRHREHHISELDKEVQHLHENISALTKELEFKGKEILRIRSESNQQIRLEEME---EKYLMRESKPED 820
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIlnlQCETLVQEEEQF 833
|
730 740
....*....|....*....|....*.
gi 154350244 821 IQMITELKAMLTERDQIIKKLIEDNK 846
Cdd:TIGR00618 834 LSRLEEKSATLGEITHQLLKYEECSK 859
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
107-758 |
2.46e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 107 VESLNKMLEELRLERKKLIEDYE------GKLNKAqsfyERELDTLKRsQLFTAESLQASKEKEADLRKEFQGQEAIL-- 178
Cdd:COG4913 206 IGDLDDFVREYMLEEPDTFEAADalvehfDDLERA----HEALEDARE-QIELLEPIRELAERYAAARERLAELEYLRaa 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 179 ------RKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSK---HKEVE-SELAAA 248
Cdd:COG4913 281 lrlwfaQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEReieRLERElEERERR 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 249 RERLQQQASDLVLK---------------ASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDE 313
Cdd:COG4913 361 RARLEALLAALGLPlpasaeefaalraeaAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 314 EQKQQILELEKKVNEAkrtqqeyyERELKNLQsrleeEVTQLNEahsktlEELAWkhHMAIEAV-HS------------- 379
Cdd:COG4913 441 RLLALRDALAEALGLD--------EAELPFVG-----ELIEVRP------EEERW--RGAIERVlGGfaltllvppehya 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 380 ------NAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELEN--------LKEVLEDKLN-----------------TA 428
Cdd:COG4913 500 aalrwvNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFkphpfrawLEAELGRRFDyvcvdspeelrrhpraiTR 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 429 NQEIGHLQDMVRK-------SEQGLG-SAEGLIASLQDSQERLQNELDLTKDSLKEtkdalLNVEGELEQERQQHEETIA 500
Cdd:COG4913 580 AGQVKGNGTRHEKddrrrirSRYVLGfDNRAKLAALEAELAELEEELAEAEERLEA-----LEAELDALQERREALQRLA 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 501 AMKEEEklkVDKMAHDLEIkwtENLRQEcsklREELRlqheedkkSAMSQLLQLKDR--EKNAARDSWQKKVEDLLNQIS 578
Cdd:COG4913 655 EYSWDE---IDVASAEREI---AELEAE----LERLD--------ASSDDLAALEEQleELEAELEELEEELDELKGEIG 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 579 LLKQNLEiqlsqsqtslqqlqaQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLafQTMEEEKEKEQRALENHLQQKHS 658
Cdd:COG4913 717 RLEKELE---------------QAEEELDELQDRLEAAEDLARLELRALLEERFA--AALGDAVERELRENLEERIDALR 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 659 AELQSLKDAHRESMEGFRIEMEQELQTLRFELEDEGK--AMLASLRSE-LNHQHAAAIDLLRHNHHQELAAAKMELERSI 735
Cdd:COG4913 780 ARLNRAEEELERAMRAFNREWPAETADLDADLESLPEylALLDRLEEDgLPEYEERFKELLNENSIEFVADLLSKLRRAI 859
|
730 740
....*....|....*....|...
gi 154350244 736 DISRRqskehicRITDLQEELRH 758
Cdd:COG4913 860 REIKE-------RIDPLNDSLKR 875
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
37-441 |
2.83e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 37 EVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRmEVESLNKMLEE 116
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNE-QISQLKKELTN 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 117 LRLERKKLIEDYEGKlnkaqsfyERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQE---AILRKTIGKLKTELQMVQ 193
Cdd:TIGR04523 354 SESENSEKQRELEEK--------QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQEKELLE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 194 DEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQ 273
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 274 MTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQ------------KQQILELEKKVNEAKRTQQeyyerEL 341
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELnkddfelkkenlEKEIDEKNKEIEELKQTQK-----SL 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 342 KNLQSRLEEEVTQLNEAHSKTLEELAWKHHMAIEAvhSNAIRDKKKLQMDLEEQhnkdKLNLEEDKNQLQQELENLKEVL 421
Cdd:TIGR04523 581 KKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSL--EKELEKAKKENEKLSSI----IKNIKSKKNKLKQEVKQIKETI 654
|
410 420
....*....|....*....|
gi 154350244 422 EDKLNTANQEIGHLQDMVRK 441
Cdd:TIGR04523 655 KEIRNKWPEIIKKIKESKTK 674
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
201-422 |
3.62e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 201 DKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIgmlQATQMTQEVTI 280
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL---AELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 281 KDLESEKSRVNERL--SQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYER---ELKNLQSRLEEEVTQL 355
Cdd:COG4942 97 AELEAQKEELAELLraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAdlaELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 154350244 356 NEAHSKTLEELAwkhhmaieavhsnAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKEVLE 422
Cdd:COG4942 177 EALLAELEEERA-------------ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
236-468 |
4.09e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 236 SKHKEVESELAAARERLQQQASDLvlkashiGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQ 315
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-------AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 316 KQQILELEKkvneakrtQQEYYERELKNLQsRLEEEVTQLNEAHSKTLEELAwKHHMAIEAVHSNAIRDKKKLQMDLEEQ 395
Cdd:COG4942 93 AELRAELEA--------QKEELAELLRALY-RLGRQPPLALLLSPEDFLDAV-RRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 154350244 396 HnkdklNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELD 468
Cdd:COG4942 163 A-----ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
68-548 |
4.46e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 4.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 68 EDLQAAhRREIQELLKSQQDHSASVNKGQeKAEELHRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFYEReldtlK 147
Cdd:pfam05483 317 EDLQIA-TKTICQLTEEKEAQMEELNKAK-AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK-----K 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 148 RSQLFTAESLQASKEKEADLRKEFQGQEAIL---RKTIGKLKTELQMVQDEAGSLLDKCQK----LQTALAIAENNVQVL 220
Cdd:pfam05483 390 SSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIAEELKGKEQELIFLLQAREKeihdLEIQLTAIKTSEEHY 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 221 QKQLDDAKegemALLSKHKEVESELAAARERLQQQASDLVLKASHIGMlqaTQMTQEVTIKDLESEKSRVNERLSQLEEE 300
Cdd:pfam05483 470 LKEVEDLK----TELEKEKLKNIELTAHCDKLLLENKELTQEASDMTL---ELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 301 RAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYERELKnlqsrlEEEVTQLNEAHSKTLEELAWKHHMAIEAVHSN 380
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLK------KEKQMKILENKCNNLKKQIENKNKNIEELHQE 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 381 AIRDKKKlqmdlEEQHNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIghlqdmvrksEQGLGSAEGLIASLQDSQ 460
Cdd:pfam05483 617 NKALKKK-----GSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEI----------EDKKISEEKLLEEVEKAK 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 461 ERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWT-----ENLRQECSKLREE 535
Cdd:pfam05483 682 AIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAAleielSNIKAELLSLKKQ 761
|
490
....*....|...
gi 154350244 536 LRLQHEEDKKSAM 548
Cdd:pfam05483 762 LEIEKEEKEKLKM 774
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
66-496 |
5.13e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 66 ALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELR---------LERKKLIEDYEGKLNKaq 136
Cdd:PRK01156 246 SLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINdyfkykndiENKKQILSNIDAEINK-- 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 137 sfYERELDTLKRSQLFTAESLQASKEKE--ADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAE 214
Cdd:PRK01156 324 --YHAIIKKLSVLQKDYNDYIKKKSRYDdlNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 215 NNVQVLQKQLDDAKegemallSKHKEVESELAAARERLQQQASDLVLKASHIGMLQAtQMTQEVTIKDLESEKSR----- 289
Cdd:PRK01156 402 IDPDAIKKELNEIN-------VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNG-QSVCPVCGTTLGEEKSNhiinh 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 290 VNERLSQLEEERAFLRSKTQSLDEEQKQQIlELEKKVNEAKRTQQEYYERELKNLQSRLEE---EVTQLNEAHSKT---- 362
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLK-KRKEYLESEEINKSINEYNKIESARADLEDikiKINELKDKHDKYeeik 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 363 -------LEEL-----AWKHHMA------IEAVHSNAIRDKKKLQmDLEEQHNKDKLNLEEDKNQLQQ---ELENLKEVL 421
Cdd:PRK01156 553 nrykslkLEDLdskrtSWLNALAvislidIETNRSRSNEIKKQLN-DLESRLQEIEIGFPDDKSYIDKsirEIENEANNL 631
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 154350244 422 EDKLNTAnQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHE 496
Cdd:PRK01156 632 NNKYNEI-QENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIE 705
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
137-862 |
1.05e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 137 SFYERELDTLKRSQlfTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENN 216
Cdd:PTZ00121 1075 SYKDFDFDAKEDNR--ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 217 VQVLQKQLDDAKEGEmalLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTikdlESEKSRVNERLSQ 296
Cdd:PTZ00121 1153 RVEIARKAEDARKAE---EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEER----KAEEARKAEDAKK 1225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 297 LEEERAF--LRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEAHSktleelawkhhmAI 374
Cdd:PTZ00121 1226 AEAVKKAeeAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK------------AD 1293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 375 EAVHSNAIRDKKKLQMDLEEQHNKDKLNLE-EDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLI 453
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKaEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 454 ASLQDSQERLQNELDLTKDSLKETKDAllnvegelEQERQQHEETiaAMKEEEKLKVDKMAHDLE-IKWTENLRQECSKL 532
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKA--------EEDKKKADEL--KKAAAAKKKADEAKKKAEeKKKADEAKKKAEEA 1443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 533 R--EELRLQHEEDKKSamsQLLQLKDREKNAArDSWQKKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQRLT 610
Cdd:PTZ00121 1444 KkaDEAKKKAEEAKKA---EEAKKKAEEAKKA-DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 611 QELEELEEQHQQRHKSLKEAHvlafQTMEEEKEKEQRALEN--HLQQKHSAElQSLKDAHRESMEGFRIEMEQELQTLRF 688
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAK----KAEEKKKADELKKAEElkKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 689 ELEDEGKAMLASLRSELNHQHAAAidllrhNHHQELAAAKMELERSIDISRRQSKEHICRITDLQEELRHREHHISELDK 768
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEA------KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 769 EVQHLHENISALTKELEFKGKEILRIRSESNQQIRLEEMEEKYLMRESKPEDIQMITELKAMLTERdqiIKKLIEDNKFY 848
Cdd:PTZ00121 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE---AKKEAEEDKKK 1745
|
730
....*....|....
gi 154350244 849 QLELVNRETNFNKV 862
Cdd:PTZ00121 1746 AEEAKKDEEEKKKI 1759
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
120-338 |
1.79e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 120 ERKKLIEDYEGKLNKAQSfyerELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQdEAGSL 199
Cdd:COG3883 27 ELQAELEAAQAELDALQA----ELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY-RSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 200 LDKCQKLQTALAIAE--NNVQVLQKQLDDAKEgemaLLSKHKEVESELAAARERLQQQASDLVLK----ASHIGMLQATQ 273
Cdd:COG3883 102 VSYLDVLLGSESFSDflDRLSALSKIADADAD----LLEELKADKAELEAKKAELEAKLAELEALkaelEAAKAELEAQQ 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 154350244 274 MTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYE 338
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
58-358 |
1.93e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 58 QFEKDKRLALEDLQAAHRR--EIQELLKsqqdhsasvnkgqEKAEELHRMEVESlNKMLEELRLERKKliEDYEGK-LNK 134
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENieRLDLIID-------------EKRQQLERLRRER-EKAERYQALLKEK--REYEGYeLLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 135 AQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLK----TELQMVQDEAGSLLDKCQKLQTAL 210
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 211 AIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRV 290
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 291 NERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEY--YERELKNLQSRLEEEVTQLNEA 358
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneLEEEKEDKALEIKKQEWKLEQL 460
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
279-780 |
2.26e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 279 TIKDLESEKSRVNERLSQLEEERAFLRSKTQSLD-------------EEQKQQILELEKKVNEAKRTQQEYYEReLKNLQ 345
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADevleeheerreelETLEAEIEDLRETIAETEREREELAEE-VRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 346 SRLEEEVTQLNEAHSKT-LEELAWKhhmAIEAVHSNAIRDKKKLQMDLEEQ------HNKDKLNLEEDKNQLQQELENLK 418
Cdd:PRK02224 286 ERLEELEEERDDLLAEAgLDDADAE---AVEARREELEDRDEELRDRLEECrvaaqaHNEEAESLREDADDLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 419 E---VLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLtkdsLKETKDALLNVEGELEQERQQH 495
Cdd:PRK02224 363 EeaaELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE----LREERDELREREAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 496 EETIA---AMKEEEKL-----KVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKsamsQLLQLKDREKNAARdswq 567
Cdd:PRK02224 439 RERVEeaeALLEAGKCpecgqPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE----RLERAEDLVEAEDR---- 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 568 kkVEDLLNQISLLKQNLEIQLSQSQTSlqqlqaqfTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQR 647
Cdd:PRK02224 511 --IERLEERREDLEELIAERRETIEEK--------RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 648 ALENhlqqkhSAELQSLKDAhrESMEGFRIEMEQELQTLR------FELEDEGKAMLASLR---SELNHQH-AAAIDLLR 717
Cdd:PRK02224 581 LAEL------KERIESLERI--RTLLAAIADAEDEIERLRekrealAELNDERRERLAEKRerkRELEAEFdEARIEEAR 652
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 154350244 718 HNHHQ-------------ELAAAKMELERSIDISRRQSKEhicritdlQEELRHREHHISELDKEVQHLHENISAL 780
Cdd:PRK02224 653 EDKERaeeyleqveekldELREERDDLQAEIGAVENELEE--------LEELRERREALENRVEALEALYDEAEEL 720
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
242-585 |
2.37e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 242 ESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLsqlEEERAFLRSKT---QSLDEEQKQQ 318
Cdd:pfam10174 302 ESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRL---EEKESFLNKKTkqlQDLTEEKSTL 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 319 ILELE--KKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEAHS--KTLEELAWKHHMAIeAVHSNAIRDKKKLQMDLEE 394
Cdd:pfam10174 379 AGEIRdlKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKErvKSLQTDSSNTDTAL-TTLEEALSEKERIIERLKE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 395 QHNKDKLNLEEDKNQLQQELENLKE---VLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTK 471
Cdd:pfam10174 458 QREREDRERLEELESLKKENKDLKEkvsALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLE 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 472 DSLKETKDALLNVEGE---------LEQERQQHEET-------------IAAMKEEEKLKVDKMAHDLEiKWTENLRQEC 529
Cdd:pfam10174 538 NQLKKAHNAEEAVRTNpeindrirlLEQEVARYKEEsgkaqaeverllgILREVENEKNDKDKKIAELE-SLTLRQMKEQ 616
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 154350244 530 SKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLE 585
Cdd:pfam10174 617 NKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELD 672
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
66-259 |
2.44e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 66 ALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELhRMEVESLNKMLEELRLERKKLiedyEGKLNKAQSFYERELDT 145
Cdd:COG4942 38 ELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-EQELAALEAELAELEKEIAEL----RAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 146 LKRSQLFTAESLQASKEKEADLRKEFQGQEAI---LRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAiaenNVQVLQK 222
Cdd:COG4942 113 LYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLapaRREQAEELRADLAELAALRAELEAERAELEALLA----ELEEERA 188
|
170 180 190
....*....|....*....|....*....|....*..
gi 154350244 223 QLDDAKEGEMALLSKHKEVESELAAARERLQQQASDL 259
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
275-372 |
3.81e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 275 TQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLD---EEQKQQILELEKKVNEAKRTQQE---------YYERELK 342
Cdd:COG2433 396 EAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEaelEEKDERIERLERELSEARSEERReirkdreisRLDREIE 475
|
90 100 110
....*....|....*....|....*....|..
gi 154350244 343 NLQSRLEEEVTQLNEAHSKT--LEELAWKHHM 372
Cdd:COG2433 476 RLERELEEERERIEELKRKLerLKELWKLEHS 507
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
75-389 |
3.93e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.90 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 75 RREIQELLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLErkkLIEDYEGKLNKAQSFYERELDTLKRSQLFTA 154
Cdd:pfam09731 167 KEASDTAEISREKATDSALQKAEALAEKLKEVINLAKQSEEEAAPP---LLDAAPETPPKLPEHLDNVEEKVEKAQSLAK 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 155 ESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKcqklqtalaiAENNVQVLQKQLDDAKEGEmal 234
Cdd:pfam09731 244 LVDQYKELVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSLIAH----------AHREIDQLSKKLAELKKRE--- 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 235 lskHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEvtikdleseksrvnerlsqLEEERAFLRSKTQS-LDE 313
Cdd:pfam09731 311 ---EKHIERALEKQKEELDKLAEELSARLEEVRAADEAQLRLE-------------------FEREREEIRESYEEkLRT 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 314 EQKQQILELEKKVNEAKRTQ-QEYYERELKNLQSRLEEE----VTQLNEAHSKtLEELawkhHMAIEAvHSNAIRDKKKL 388
Cdd:pfam09731 369 ELERQAEAHEEHLKDVLVEQeIELQREFLQDIKEKVEEEragrLLKLNELLAN-LKGL----EKATSS-HSEVEDENRKA 442
|
.
gi 154350244 389 Q 389
Cdd:pfam09731 443 Q 443
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
88-443 |
4.84e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 88 HSASVNKGQEKaEELHRMEVESLNKMLEEL--RLERKKliedyegKLNKAQSFYERELDtlkRSQLFTAESLQASKEKEA 165
Cdd:pfam17380 280 HQKAVSERQQQ-EKFEKMEQERLRQEKEEKarEVERRR-------KLEEAEKARQAEMD---RQAAIYAEQERMAMERER 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 166 DLRKEFQGQEailrktigklKTELQMVQdeagslldkcqklQTALAIAENNVQVLQKQlddakegEMALLSKHKEVESEL 245
Cdd:pfam17380 349 ELERIRQEER----------KRELERIR-------------QEEIAMEISRMRELERL-------QMERQQKNERVRQEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 246 AAARE-RLQQQASDLVLKASHIGMLQ---ATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILE 321
Cdd:pfam17380 399 EAARKvKILEEERQRKIQQQKVEMEQiraEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 322 LEKKvneaKRTQQEYYERELKNLQSRLEEEVTQLNEAHSKtleelawkhhmaieavhsnairdKKKLQMDLEEQHN---- 397
Cdd:pfam17380 479 LEKE----KRDRKRAEEQRRKILEKELEERKQAMIEEERK-----------------------RKLLEKEMEERQKaiye 531
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 154350244 398 KDKLNLEEDKNQLQQELENLKEVlEDKLNTANQEIGHLQDMVRKSE 443
Cdd:pfam17380 532 EERRREAEEERRKQQEMEERRRI-QEQMRKATEERSRLEAMERERE 576
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
61-414 |
5.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 61 KDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRME--------VESLNKMLEELRLERKKLIEDyegkl 132
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswdeidVASAEREIAELEAELERLDAS----- 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 133 nkaqsfyERELDTLKRsqlfTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAI 212
Cdd:COG4913 684 -------SDDLAALEE----QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 213 AennvqVLQKQLDDAKEGEMAllskhKEVESELAAARERLQQQASDLVLKASHIgmlqatqmtqevtIKDLESEKSRVNE 292
Cdd:COG4913 753 E-----RFAAALGDAVERELR-----ENLEERIDALRARLNRAEEELERAMRAF-------------NREWPAETADLDA 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 293 RLSQLEEERAFLRsktqSLDEEqkqqilELEKKVNEAKRTQQEYYERELKNLQSRLEEE-------VTQLNEAhsktLEE 365
Cdd:COG4913 810 DLESLPEYLALLD----RLEED------GLPEYEERFKELLNENSIEFVADLLSKLRRAireikerIDPLNDS----LKR 875
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 154350244 366 LAWKH----HMAIEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQEL 414
Cdd:COG4913 876 IPFGPgrylRLEARPRPDPEVREFRQELRAVTSGASLFDEELSEARFAALKRL 928
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
7-564 |
5.90e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 7 TEFEAYKHRVEDMQlcAEAQHVQRIVTMSREVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQ 86
Cdd:COG4913 235 DDLERAHEALEDAR--EQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 87 DHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLiedyegklnkaqsfyERELDTLKRSQLFTAESLQASKEKEAD 166
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGGDRLEQLEREIERL---------------ERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 167 LRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQlddakegemallskHKEVESELA 246
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR--------------KSNIPARLL 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 247 AARERLQQQ----ASDLVLKASHIgmlqatqmtqEVTIKDLESEKS--RV--NERLSQLEEERAF--LRSKTQSLDEEQK 316
Cdd:COG4913 444 ALRDALAEAlgldEAELPFVGELI----------EVRPEEERWRGAieRVlgGFALTLLVPPEHYaaALRWVNRLHLRGR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 317 QQILELEKKVNEAKRTQQE----YYERELKN--LQSRLEEEVTQLNEAHS-KTLEELAwKHHMAIEA---VHSNAIRDKK 386
Cdd:COG4913 514 LVYERVRTGLPDPERPRLDpdslAGKLDFKPhpFRAWLEAELGRRFDYVCvDSPEELR-RHPRAITRagqVKGNGTRHEK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 387 KLQMDLEEQH-----NKDKLN-LEEDKNQLQQELENLKEV---LEDKLNTANQEIGHLQ--DMVRKSEQGLGSAEGLIAS 455
Cdd:COG4913 593 DDRRRIRSRYvlgfdNRAKLAaLEAELAELEEELAEAEERleaLEAELDALQERREALQrlAEYSWDEIDVASAEREIAE 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 456 LQDSQERLQN------ELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMKEEEKlKVDKMAHDLEIKWTENLRQEC 529
Cdd:COG4913 673 LEAELERLDAssddlaALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEAAEDLARLELRALL 751
|
570 580 590
....*....|....*....|....*....|....*.
gi 154350244 530 SKLREELRL-QHEEDKKSAMSQLLQLKDREKNAARD 564
Cdd:COG4913 752 EERFAAALGdAVERELRENLEERIDALRARLNRAEE 787
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
218-533 |
6.08e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 218 QVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKAS-------HIGMLQATQMTQEVTI-KDLESEKSR 289
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalknarlDLRRLFDEKQSEKDKKnKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 290 VNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTqqeyYERELKNLQSRLEEEVTQLNEAHSKTLEELAWK 369
Cdd:pfam12128 680 ANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQV----VEGALDAQLALLKAAIAARRSGAKAELKALETW 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 370 HHMAIEAVHSNAIRDKKKLQ--MDLE---EQHNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQ 444
Cdd:pfam12128 756 YKRDLASLGVDPDVIAKLKReiRTLErkiERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIA 835
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 445 GLGSAEGLIASLQDSQERLQNELD--LTKDSLKETKDALLNVEGELEQERQQHEETIAAMkEEEKLKVDKMAHDLEiKWT 522
Cdd:pfam12128 836 DTKLRRAKLEMERKASEKQQVRLSenLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQL-EDLKLKRDYLSESVK-KYV 913
|
330
....*....|.
gi 154350244 523 ENLRQECSKLR 533
Cdd:pfam12128 914 EHFKNVIADHS 924
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
399-508 |
6.59e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.43 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 399 DKLNLEEDKNqLQQELENL---KEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDS-- 473
Cdd:pfam05911 676 NDLKTEENKR-LKEEFEQLkseKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAETQLKCMAESye 754
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 154350244 474 ------------LKETKDALLNVEGELEQERQQHEETIAAMKE-EEKL 508
Cdd:pfam05911 755 dletrlteleaeLNELRQKFEALEVELEEEKNCHEELEAKCLElQEQL 802
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
153-358 |
6.70e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 153 TAESLQASKEKEADlrkEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEgem 232
Cdd:COG3883 13 FADPQIQAKQKELS---ELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 233 allskhkEVESELAAA-RERLQQQASDLVLKASHIG-MLQATQMTQEVT------IKDLESEKSRVNERLSQLEEERAFL 304
Cdd:COG3883 87 -------ELGERARALyRSGGSVSYLDVLLGSESFSdFLDRLSALSKIAdadadlLEELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 154350244 305 RSKTQSLDEEQKqqilELEKKVNEAKRTQQEyYERELKNLQSRLEEEVTQLNEA 358
Cdd:COG3883 160 EALKAELEAAKA----ELEAQQAEQEALLAQ-LSAEEAAAEAQLAELEAELAAA 208
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
172-259 |
6.89e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 39.71 E-value: 6.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154350244 172 QGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKH-KEVESELAAARE 250
Cdd:TIGR04320 253 PNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTAQNNlATAQAALANAEA 332
|
....*....
gi 154350244 251 RLQQQASDL 259
Cdd:TIGR04320 333 RLAKAKEAL 341
|
|
| |
