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Conserved domains on  [gi|148231077|ref|NP_001089625|]
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alpha-1,4-N-acetylglucosaminyltransferase L homeolog precursor [Xenopus laevis]

Protein Classification

Gly_transf_sug and Gb3_synth domain-containing protein( domain architecture ID 10376080)

Gly_transf_sug and Gb3_synth domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gb3_synth pfam04572
Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of ...
 198-327 9.39e-52

Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilize UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region.


:

Pssm-ID: 428017  Cd Length: 130  Bit Score: 167.42  E-value: 9.39e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148231077  198 GFDSHRDFTWTCMEDFVKNYNGAIWGHQGPALFTRVLKKFyCDIPPFKGDEDLKCGNISFLNPRRFYPIECQYWMKFFQV 277
Cdd:pfam04572   1 AFDKGHPFLELCLRDFVENYNGDEWGHNGPGLLTRVLKKF-CNTSDLKAMERVRCRGFTVLPPEAFYPIPYPNWKRFFEP 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 148231077  278 WKAIPT---FNESYALHLFNYANRAERrvMVPGSNTLVEHLYIQNCPATYQAV 327
Cdd:pfam04572  80 EDLEETmklTKDSYAVHLWNKLSKGEP--LKVGSNSLYARLARKHCPRTYAAA 130
Gly_transf_sug super family cl19952
Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short ...
 65-177 1.85e-12

Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases.


The actual alignment was detected with superfamily member pfam04488:

Pssm-ID: 418730 [Multi-domain]  Cd Length: 93  Bit Score: 62.35  E-value: 1.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148231077   65 PSLVLCAVESAARINPKKPVAFFMKGLPdinsveehtlalnsfptlatynniylFPLRMENLLTDTP-LLPWYDKVnpKN 143
Cdd:pfam04488   1 PERVMKAIESLIKLHPDYCYVVLSDDLD--------------------------FALDINFLKSDTPwFLEAYSLL--PL 52

                          90       100       110
                  ....*....|....*....|....*....|....
gi 148231077  144 EIHwshvSSDASRLALMYKYGGLYMDTDIISLKP 177
Cdd:pfam04488  53 FIA----KSDLLRYAILYKYGGIYLDTDVIPLKS 82
 
Name Accession Description Interval E-value
Gb3_synth pfam04572
Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of ...
 198-327 9.39e-52

Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilize UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region.


Pssm-ID: 428017  Cd Length: 130  Bit Score: 167.42  E-value: 9.39e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148231077  198 GFDSHRDFTWTCMEDFVKNYNGAIWGHQGPALFTRVLKKFyCDIPPFKGDEDLKCGNISFLNPRRFYPIECQYWMKFFQV 277
Cdd:pfam04572   1 AFDKGHPFLELCLRDFVENYNGDEWGHNGPGLLTRVLKKF-CNTSDLKAMERVRCRGFTVLPPEAFYPIPYPNWKRFFEP 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 148231077  278 WKAIPT---FNESYALHLFNYANRAERrvMVPGSNTLVEHLYIQNCPATYQAV 327
Cdd:pfam04572  80 EDLEETmklTKDSYAVHLWNKLSKGEP--LKVGSNSLYARLARKHCPRTYAAA 130
Gly_transf_sug pfam04488
Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short ...
 65-177 1.85e-12

Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases.


Pssm-ID: 398274 [Multi-domain]  Cd Length: 93  Bit Score: 62.35  E-value: 1.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148231077   65 PSLVLCAVESAARINPKKPVAFFMKGLPdinsveehtlalnsfptlatynniylFPLRMENLLTDTP-LLPWYDKVnpKN 143
Cdd:pfam04488   1 PERVMKAIESLIKLHPDYCYVVLSDDLD--------------------------FALDINFLKSDTPwFLEAYSLL--PL 52

                          90       100       110
                  ....*....|....*....|....*....|....
gi 148231077  144 EIHwshvSSDASRLALMYKYGGLYMDTDIISLKP 177
Cdd:pfam04488  53 FIA----KSDLLRYAILYKYGGIYLDTDVIPLKS 82
OCH1 COG3774
Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];
131-180 7.84e-07

Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442988 [Multi-domain]  Cd Length: 136  Bit Score: 47.58  E-value: 7.84e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 148231077 131 PLLPWYDKVNpkneiHWSHVSsDASRLALMYKYGGLYMDTDIISLKPVPE 180
Cdd:COG3774   55 EYLEAYYKLK-----KGAARA-DLFRLLLLYKYGGIYLDIDVECLKPLDP 98
 
Name Accession Description Interval E-value
Gb3_synth pfam04572
Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of ...
 198-327 9.39e-52

Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilize UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region.


Pssm-ID: 428017  Cd Length: 130  Bit Score: 167.42  E-value: 9.39e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148231077  198 GFDSHRDFTWTCMEDFVKNYNGAIWGHQGPALFTRVLKKFyCDIPPFKGDEDLKCGNISFLNPRRFYPIECQYWMKFFQV 277
Cdd:pfam04572   1 AFDKGHPFLELCLRDFVENYNGDEWGHNGPGLLTRVLKKF-CNTSDLKAMERVRCRGFTVLPPEAFYPIPYPNWKRFFEP 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 148231077  278 WKAIPT---FNESYALHLFNYANRAERrvMVPGSNTLVEHLYIQNCPATYQAV 327
Cdd:pfam04572  80 EDLEETmklTKDSYAVHLWNKLSKGEP--LKVGSNSLYARLARKHCPRTYAAA 130
Gly_transf_sug pfam04488
Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short ...
 65-177 1.85e-12

Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases.


Pssm-ID: 398274 [Multi-domain]  Cd Length: 93  Bit Score: 62.35  E-value: 1.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148231077   65 PSLVLCAVESAARINPKKPVAFFMKGLPdinsveehtlalnsfptlatynniylFPLRMENLLTDTP-LLPWYDKVnpKN 143
Cdd:pfam04488   1 PERVMKAIESLIKLHPDYCYVVLSDDLD--------------------------FALDINFLKSDTPwFLEAYSLL--PL 52

                          90       100       110
                  ....*....|....*....|....*....|....
gi 148231077  144 EIHwshvSSDASRLALMYKYGGLYMDTDIISLKP 177
Cdd:pfam04488  53 FIA----KSDLLRYAILYKYGGIYLDTDVIPLKS 82
OCH1 COG3774
Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];
131-180 7.84e-07

Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442988 [Multi-domain]  Cd Length: 136  Bit Score: 47.58  E-value: 7.84e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 148231077 131 PLLPWYDKVNpkneiHWSHVSsDASRLALMYKYGGLYMDTDIISLKPVPE 180
Cdd:COG3774   55 EYLEAYYKLK-----KGAARA-DLFRLLLLYKYGGIYLDIDVECLKPLDP 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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