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Conserved domains on  [gi|77736539|ref|NP_001029371|]
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neuronal pentraxin-2 precursor [Rattus norvegicus]

Protein Classification

PTX domain-containing protein( domain architecture ID 10639996)

PTX domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTX smart00159
Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric ...
 220-425 8.44e-104

Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.


:

Pssm-ID: 128463  Cd Length: 206  Bit Score: 306.50  E-value: 8.44e-104
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539    220 FKSPDAFKVSLPLRTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIELLINDKV 298
Cdd:smart00159   1 QTDLTGKVFVFPKESDTSYVKLKPELPkPLQAFTVCLWFYSDLSPRGYSLFSYATKGQDNELLLYKEKQGEYSLYIGGKK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539    299 AQLPLFVSDGKWHHICITWTTRDGMWEAFQDGeKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFN 378
Cdd:smart00159  81 VQFPVPESDGKWHHICTTWESSSGIAELWVDG-KPGVRKGLAKGYTVKPGGSIILGQEQDSYGGGFDATQSFVGEIGDLN 159

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 77736539    379 IWDRVLRAQEIINIANCSTNMPGNIIPWVDNNVDVFGGASKWPVETC 425
Cdd:smart00159 160 MWDSVLSPEEIKSVYKGSTFSIGNILNWRALNYEVHGGVVIKPQEWC 206
COG4913 super family cl25907
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
58-215 2.36e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


The actual alignment was detected with superfamily member COG4913:

Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.75  E-value: 2.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   58 EELRAAVLQLRETVVQQKETLGAQREAIRELTSKLARCEGLAGgkargtgatgkdtMGDLPRDpghvVEQLSRSLQTLKD 137
Cdd:COG4913  613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE-------------YSWDEID----VASAEREIAELEA 675

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 77736539  138 RLESLElqlhtnASNAGLpsdfrEVLQRRLGELERQLlrkvAELEDEKsllhNETSAHRQKTENTLNALLQRVTELER 215
Cdd:COG4913  676 ELERLD------ASSDDL-----AALEEQLEELEAEL----EELEEEL----DELKGEIGRLEKELEQAEEELDELQD 734
 
Name Accession Description Interval E-value
PTX smart00159
Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric ...
 220-425 8.44e-104

Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.


Pssm-ID: 128463  Cd Length: 206  Bit Score: 306.50  E-value: 8.44e-104
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539    220 FKSPDAFKVSLPLRTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIELLINDKV 298
Cdd:smart00159   1 QTDLTGKVFVFPKESDTSYVKLKPELPkPLQAFTVCLWFYSDLSPRGYSLFSYATKGQDNELLLYKEKQGEYSLYIGGKK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539    299 AQLPLFVSDGKWHHICITWTTRDGMWEAFQDGeKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFN 378
Cdd:smart00159  81 VQFPVPESDGKWHHICTTWESSSGIAELWVDG-KPGVRKGLAKGYTVKPGGSIILGQEQDSYGGGFDATQSFVGEIGDLN 159

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 77736539    379 IWDRVLRAQEIINIANCSTNMPGNIIPWVDNNVDVFGGASKWPVETC 425
Cdd:smart00159 160 MWDSVLSPEEIKSVYKGSTFSIGNILNWRALNYEVHGGVVIKPQEWC 206
PTX cd00152
Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their ...
 224-420 4.39e-95

Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.


Pssm-ID: 238086  Cd Length: 201  Bit Score: 284.16  E-value: 4.39e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 224 DAFKVSLPLRTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIELLINDKVAQLP 302
Cdd:cd00152   5 SGKVFVFPKESDTSYVKLKPELPkPLQAFTLCLWVYTDLSTREYSLFSYATKGQDNELLLYKEKDGGYSLYIGGKEVTFK 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 303 LFVSDGKWHHICITWTTRDGMWEAFQDGEKLGTGEnLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDR 382
Cdd:cd00152  85 VPESDGAWHHICVTWESTSGIAELWVNGKLSVRKS-LKKGYTVGPGGSIILGQEQDSYGGGFDATQSFVGEISDVNMWDS 163

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 77736539 383 VLRAQEIINIANCSTNMPGNIIPWVDNNVDVFGGASKW 420
Cdd:cd00152 164 VLSPEEIKNVYSEGGTLSGNILNWRALNYEINGGVVIK 201
Pentaxin pfam00354
Pentaxin family; Pentaxins are also known as pentraxins.
 225-417 1.72e-32

Pentaxin family; Pentaxins are also known as pentraxins.


Pssm-ID: 278768  Cd Length: 194  Bit Score: 121.76  E-value: 1.72e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   225 AFKVSLPLRTNYLYGKIKKTLPeLYAFTICLWLRSSASPGIGTpFSYAVPGQANEIvLIEWgNNPIELLINdkVAQLP-L 303
Cdd:pfam00354   2 VFVFPKESDTSYVSLIPELEKP-LQNFTLCLRFYTDLSRSYSL-FSYATKKQDNEL-LIFK-EKDGEYSFY--VGGAEvL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   304 FVSDG---KWHHICITWTTRDGMWEAFQDGeKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIW 380
Cdd:pfam00354  76 FKVSEipvAPVHICTSWESSSGIAEFWVDG-KPWVRKSLKKGYTVGAPPSIILGQEQDSYGGGFDASQSLVGEIGDLNMW 154

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 77736539   381 DRVLRAQEIINIANCSTnMPGNIIPWVDNNVDVFGGA 417
Cdd:pfam00354 155 DYVLTPEEINTVYKGGP-FSPNILDWRALNYEARGYV 190
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
58-215 2.36e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.75  E-value: 2.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   58 EELRAAVLQLRETVVQQKETLGAQREAIRELTSKLARCEGLAGgkargtgatgkdtMGDLPRDpghvVEQLSRSLQTLKD 137
Cdd:COG4913  613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE-------------YSWDEID----VASAEREIAELEA 675

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 77736539  138 RLESLElqlhtnASNAGLpsdfrEVLQRRLGELERQLlrkvAELEDEKsllhNETSAHRQKTENTLNALLQRVTELER 215
Cdd:COG4913  676 ELERLD------ASSDDL-----AALEEQLEELEAEL----EELEEEL----DELKGEIGRLEKELEQAEEELDELQD 734
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
58-174 5.37e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 42.33  E-value: 5.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   58 EELRAAVLQLRETVVQQKETLGAQREAIRELTSKL--ARCEGLAGGKARGT----GATGK-----DTMGDLPRDPGHVVE 126
Cdd:PRK02224 609 ERLREKREALAELNDERRERLAEKRERKRELEAEFdeARIEEAREDKERAEeyleQVEEKldelrEERDDLQAEIGAVEN 688

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 77736539  127 QLSRsLQTLKDRLESLE-----LQ-LHTNASN-----AGLPSDFRevlQRRLGELERQL 174
Cdd:PRK02224 689 ELEE-LEELRERREALEnrveaLEaLYDEAEElesmyGDLRAELR---QRNVETLERML 743
 
Name Accession Description Interval E-value
PTX smart00159
Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric ...
 220-425 8.44e-104

Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.


Pssm-ID: 128463  Cd Length: 206  Bit Score: 306.50  E-value: 8.44e-104
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539    220 FKSPDAFKVSLPLRTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIELLINDKV 298
Cdd:smart00159   1 QTDLTGKVFVFPKESDTSYVKLKPELPkPLQAFTVCLWFYSDLSPRGYSLFSYATKGQDNELLLYKEKQGEYSLYIGGKK 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539    299 AQLPLFVSDGKWHHICITWTTRDGMWEAFQDGeKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFN 378
Cdd:smart00159  81 VQFPVPESDGKWHHICTTWESSSGIAELWVDG-KPGVRKGLAKGYTVKPGGSIILGQEQDSYGGGFDATQSFVGEIGDLN 159

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 77736539    379 IWDRVLRAQEIINIANCSTNMPGNIIPWVDNNVDVFGGASKWPVETC 425
Cdd:smart00159 160 MWDSVLSPEEIKSVYKGSTFSIGNILNWRALNYEVHGGVVIKPQEWC 206
PTX cd00152
Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their ...
 224-420 4.39e-95

Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.


Pssm-ID: 238086  Cd Length: 201  Bit Score: 284.16  E-value: 4.39e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 224 DAFKVSLPLRTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIELLINDKVAQLP 302
Cdd:cd00152   5 SGKVFVFPKESDTSYVKLKPELPkPLQAFTLCLWVYTDLSTREYSLFSYATKGQDNELLLYKEKDGGYSLYIGGKEVTFK 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 303 LFVSDGKWHHICITWTTRDGMWEAFQDGEKLGTGEnLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDR 382
Cdd:cd00152  85 VPESDGAWHHICVTWESTSGIAELWVNGKLSVRKS-LKKGYTVGPGGSIILGQEQDSYGGGFDATQSFVGEISDVNMWDS 163

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 77736539 383 VLRAQEIINIANCSTNMPGNIIPWVDNNVDVFGGASKW 420
Cdd:cd00152 164 VLSPEEIKNVYSEGGTLSGNILNWRALNYEINGGVVIK 201
Pentaxin pfam00354
Pentaxin family; Pentaxins are also known as pentraxins.
 225-417 1.72e-32

Pentaxin family; Pentaxins are also known as pentraxins.


Pssm-ID: 278768  Cd Length: 194  Bit Score: 121.76  E-value: 1.72e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   225 AFKVSLPLRTNYLYGKIKKTLPeLYAFTICLWLRSSASPGIGTpFSYAVPGQANEIvLIEWgNNPIELLINdkVAQLP-L 303
Cdd:pfam00354   2 VFVFPKESDTSYVSLIPELEKP-LQNFTLCLRFYTDLSRSYSL-FSYATKKQDNEL-LIFK-EKDGEYSFY--VGGAEvL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   304 FVSDG---KWHHICITWTTRDGMWEAFQDGeKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIW 380
Cdd:pfam00354  76 FKVSEipvAPVHICTSWESSSGIAEFWVDG-KPWVRKSLKKGYTVGAPPSIILGQEQDSYGGGFDASQSLVGEIGDLNMW 154

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 77736539   381 DRVLRAQEIINIANCSTnMPGNIIPWVDNNVDVFGGA 417
Cdd:pfam00354 155 DYVLTPEEINTVYKGGP-FSPNILDWRALNYEARGYV 190
Laminin_G_3 pfam13385
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
 250-389 5.56e-16

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 74.73  E-value: 5.56e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   250 AFTICLWLRSSASPGIGTPFsyAVPGQANEIVLIEWGNNPIELLIND-----KVAQLPLFVSDGKWHHICITWttRDGMW 324
Cdd:pfam13385  18 DFTVSAWVKPDSLPGWARAI--ISSSGGGGYSLGLDGDGRLRFAVNGgnggwDTVTSGASVPLGQWTHVAVTY--DGGTL 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 77736539   325 EAFQDGEKLGTGENLAPWhPIKPGGVLILGqeqdtvgGRFDATQAFVGELSQFNIWDRVLRAQEI 389
Cdd:pfam13385  94 RLYVNGVLVGSSTLTGGP-PPGTGGPLYIG-------RSPGGDDYFNGLIDEVRIYDRALSAAEI 150
LamG cd00110
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ...
 251-380 1.58e-04

Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.


Pssm-ID: 238058 [Multi-domain]  Cd Length: 151  Bit Score: 41.63  E-value: 1.58e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 251 FTICLWLRSSASPGIgtPFSYAVPGQANEIVL--------IEWGNNPIELLINDKVAqlplfVSDGKWHHICITWTTRDG 322
Cdd:cd00110  22 LSISFSFRTTSPNGL--LLYAGSQNGGDFLALeledgrlvLRYDLGSGSLVLSSKTP-----LNDGQWHSVSVERNGRSV 94

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 323 MweaFQ-DGEKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDA-TQAFVGELSQFNIW 380
Cdd:cd00110  95 T---LSvDGERVVESGSPGGSALLNLDGPLYLGGLPEDLKSPGLPvSPGFVGCIRDLKVN 151
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
58-215 2.36e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.75  E-value: 2.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   58 EELRAAVLQLRETVVQQKETLGAQREAIRELTSKLARCEGLAGgkargtgatgkdtMGDLPRDpghvVEQLSRSLQTLKD 137
Cdd:COG4913  613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAE-------------YSWDEID----VASAEREIAELEA 675

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 77736539  138 RLESLElqlhtnASNAGLpsdfrEVLQRRLGELERQLlrkvAELEDEKsllhNETSAHRQKTENTLNALLQRVTELER 215
Cdd:COG4913  676 ELERLD------ASSDDL-----AALEEQLEELEAEL----EELEEEL----DELKGEIGRLEKELEQAEEELDELQD 734
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
57-215 3.66e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.83  E-value: 3.66e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539  57 EEELRAAVLQLRE--TVVQQKETLGAQREAIR----ELTSKLARCEGLAGgkargtgatgkdtmgdlPRDPGHVVEQLSR 130
Cdd:COG4717  77 EEELKEAEEKEEEyaELQEELEELEEELEELEaeleELREELEKLEKLLQ-----------------LLPLYQELEALEA 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 131 SLQTLKDRLESLELQLHTnasnaglpsdfREVLQRRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTENTLNALLQRV 210
Cdd:COG4717 140 ELAELPERLEELEERLEE-----------LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208


                ....*
gi 77736539 211 TELER 215
Cdd:COG4717 209 AELEE 213
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
58-174 5.37e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 42.33  E-value: 5.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   58 EELRAAVLQLRETVVQQKETLGAQREAIRELTSKL--ARCEGLAGGKARGT----GATGK-----DTMGDLPRDPGHVVE 126
Cdd:PRK02224 609 ERLREKREALAELNDERRERLAEKRERKRELEAEFdeARIEEAREDKERAEeyleQVEEKldelrEERDDLQAEIGAVEN 688

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 77736539  127 QLSRsLQTLKDRLESLE-----LQ-LHTNASN-----AGLPSDFRevlQRRLGELERQL 174
Cdd:PRK02224 689 ELEE-LEELRERREALEnrveaLEaLYDEAEElesmyGDLRAELR---QRNVETLERML 743
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
57-218 6.76e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.21  E-value: 6.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539   57 EEELRAAVLQLRETVVQQKETLGAQREAIRELTSKLARceglAGGkargtgatgkDTMGDLPRDpghvVEQLSRSLQTLK 136
Cdd:COG4913  297 LEELRAELARLEAELERLEARLDALREELDELEAQIRG----NGG----------DRLEQLERE----IERLERELEERE 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539  137 DRLESLELQLHTnasnAGLPSDFREvlqRRLGELERQLLRKVAELEDEKSLLHNE-TSAHRQKTE--NTLNALLQRVTEL 213
Cdd:COG4913  359 RRRARLEALLAA----LGLPLPASA---EEFAALRAEAAALLEALEEELEALEEAlAEAEAALRDlrRELRELEAEIASL 431


                 ....*
gi 77736539  214 ERGNS 218
Cdd:COG4913  432 ERRKS 436
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
52-215 7.28e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.93  E-value: 7.28e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539  52 GALSPEEELRAAVLQLRETVVQQKETlgaqREAIRELTSKLARceglaggkARGTGATGKDTMGDLPRDPghvveqlsrS 131
Cdd:COG3206 206 GLVDLSEEAKLLLQQLSELESQLAEA----RAELAEAEARLAA--------LRAQLGSGPDALPELLQSP---------V 264

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 132 LQTLKDRLESLELQLhtnasnaglpsdfrEVLQRRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTENTLNALLQRVT 211
Cdd:COG3206 265 IQQLRAQLAELEAEL--------------AELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREA 330


                ....
gi 77736539 212 ELER 215
Cdd:COG3206 331 SLQA 334
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 58-216 8.63e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 37.60  E-value: 8.63e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539  58 EELRAAVLQLRETVVQQKETLGAQREAIRELTSKLARCEGLAgGKARGTGATGKDtmgdlPRDpghvVEQLSRSLQTLKD 137
Cdd:COG1579  34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI-KKYEEQLGNVRN-----NKE----YEALQKEIESLKR 103

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77736539 138 RLESLE---LQLHTNasnaglpsdfREVLQRRLGELERQLLRKVAELEDEKsllhNETSAHRQKTENTLNALLQRVTELE 214
Cdd:COG1579 104 RISDLEdeiLELMER----------IEELEEELAELEAELAELEAELEEKK----AELDEELAELEAELEELEAEREELA 169


                ..
gi 77736539 215 RG 216
Cdd:COG1579 170 AK 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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