NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|56605666|ref|NP_001008282|]
View 

26S proteasome non-ATPase regulatory subunit 3 [Rattus norvegicus]

Protein Classification

26S proteasome non-ATPase regulatory subunit( domain architecture ID 10476731)

26S proteasome non-ATPase regulatory subunit is a component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Rpn3_C pfam08375
Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of ...
 461-519 1.32e-24

Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of 26S proteasome regulatory subunits such as the non-ATPase Rpn3 subunit which is essential for proteasomal function. It occurs together with the PCI/PINT domain (pfam01399).


:

Pssm-ID: 462452  Cd Length: 57  Bit Score: 96.50  E-value: 1.32e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 56605666   461 DIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAeeRREREQQDLEFAK 519
Cdd:pfam08375   1 DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESA--EEAREREERELAK 57
PCI pfam01399
PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and ...
 354-458 8.52e-24

PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).


:

Pssm-ID: 460195  Cd Length: 105  Bit Score: 95.75  E-value: 8.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56605666   354 MPYFLLTQAVRTGNLAKFNQVLDQFGEK-FQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSpEDAEF 432
Cdd:pfam01399   1 PAYRDLLRAFYSGDLSEFEEILADYKEElLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSISLSDLAKLLGLSV-DEVEK 79

                          90       100
                  ....*....|....*....|....*.
gi 56605666   433 IVAKAIRDGVIEASINHEKGYVQSKE 458
Cdd:pfam01399  80 ILAKLIRDGRIRAKIDQVNGIVVFSK 105
 
Name Accession Description Interval E-value
Rpn3_C pfam08375
Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of ...
 461-519 1.32e-24

Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of 26S proteasome regulatory subunits such as the non-ATPase Rpn3 subunit which is essential for proteasomal function. It occurs together with the PCI/PINT domain (pfam01399).


Pssm-ID: 462452  Cd Length: 57  Bit Score: 96.50  E-value: 1.32e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 56605666   461 DIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAeeRREREQQDLEFAK 519
Cdd:pfam08375   1 DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESA--EEAREREERELAK 57
PCI pfam01399
PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and ...
 354-458 8.52e-24

PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).


Pssm-ID: 460195  Cd Length: 105  Bit Score: 95.75  E-value: 8.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56605666   354 MPYFLLTQAVRTGNLAKFNQVLDQFGEK-FQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSpEDAEF 432
Cdd:pfam01399   1 PAYRDLLRAFYSGDLSEFEEILADYKEElLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSISLSDLAKLLGLSV-DEVEK 79

                          90       100
                  ....*....|....*....|....*.
gi 56605666   433 IVAKAIRDGVIEASINHEKGYVQSKE 458
Cdd:pfam01399  80 ILAKLIRDGRIRAKIDQVNGIVVFSK 105
PINT smart00088
motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, ...
 389-479 1.09e-20

motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.


Pssm-ID: 214509 [Multi-domain]  Cd Length: 88  Bit Score: 86.53  E-value: 1.09e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56605666    389 TLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEdAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYStrEP 468
Cdd:smart00088   1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPE-VEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRRS--EP 77

                           90
                   ....*....|.
gi 56605666    469 QLAFHQRISFC 479
Cdd:smart00088  78 LAQFAETLKKL 88
 
Name Accession Description Interval E-value
Rpn3_C pfam08375
Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of ...
 461-519 1.32e-24

Proteasome regulatory subunit C-terminal; This eukaryotic domain is found at the C-terminus of 26S proteasome regulatory subunits such as the non-ATPase Rpn3 subunit which is essential for proteasomal function. It occurs together with the PCI/PINT domain (pfam01399).


Pssm-ID: 462452  Cd Length: 57  Bit Score: 96.50  E-value: 1.32e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 56605666   461 DIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAeeRREREQQDLEFAK 519
Cdd:pfam08375   1 DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESA--EEAREREERELAK 57
PCI pfam01399
PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and ...
 354-458 8.52e-24

PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).


Pssm-ID: 460195  Cd Length: 105  Bit Score: 95.75  E-value: 8.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56605666   354 MPYFLLTQAVRTGNLAKFNQVLDQFGEK-FQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSpEDAEF 432
Cdd:pfam01399   1 PAYRDLLRAFYSGDLSEFEEILADYKEElLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSISLSDLAKLLGLSV-DEVEK 79

                          90       100
                  ....*....|....*....|....*.
gi 56605666   433 IVAKAIRDGVIEASINHEKGYVQSKE 458
Cdd:pfam01399  80 ILAKLIRDGRIRAKIDQVNGIVVFSK 105
PINT smart00088
motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, ...
 389-479 1.09e-20

motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.


Pssm-ID: 214509 [Multi-domain]  Cd Length: 88  Bit Score: 86.53  E-value: 1.09e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56605666    389 TLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEdAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYStrEP 468
Cdd:smart00088   1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPE-VEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRRS--EP 77

                           90
                   ....*....|.
gi 56605666    469 QLAFHQRISFC 479
Cdd:smart00088  78 LAQFAETLKKL 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH