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Conserved domains on  [gi|4504221|ref|NP_000849|]
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guanylate kinase isoform b [Homo sapiens]

Protein Classification

guanylate kinase( domain architecture ID 10799078)

guanylate kinase (GMP kinase) catalyzes the transfer of a phosphate group from ATP to guanosine monophosphate (GMP) to form guanosine diphosphate (GDP) and ADP

EC:  2.7.4.8
Gene Ontology:  GO:0004385|GO:0006163|GO:0005524

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
guanyl_kin TIGR03263
guanylate kinase; Members of this family are the enzyme guanylate kinase, also called GMP ...
 5-187 2.15e-94

guanylate kinase; Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


:

Pssm-ID: 213788  Cd Length: 179  Bit Score: 272.44  E-value: 2.15e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      5 RPVVLSGPSGAGKSTLLKRLLQEHSGIFgFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTS 84
Cdd:TIGR03263   1 LLIVISGPSGAGKSTLVKALLEEDPNLK-FSISATTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEWAEVHGNYYGTP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     85 KVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpgl 164
Cdd:TIGR03263  80 KSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADE--- 156

                         170       180
                  ....*....|....*....|...
gi 4504221    165 FDVVIINDSLDQAYAELKEALSE 187
Cdd:TIGR03263 157 FDYVIVNDDLEKAVEELKSIILA 179
 
Name Accession Description Interval E-value
guanyl_kin TIGR03263
guanylate kinase; Members of this family are the enzyme guanylate kinase, also called GMP ...
 5-187 2.15e-94

guanylate kinase; Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 213788  Cd Length: 179  Bit Score: 272.44  E-value: 2.15e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      5 RPVVLSGPSGAGKSTLLKRLLQEHSGIFgFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTS 84
Cdd:TIGR03263   1 LLIVISGPSGAGKSTLVKALLEEDPNLK-FSISATTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEWAEVHGNYYGTP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     85 KVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpgl 164
Cdd:TIGR03263  80 KSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADE--- 156

                         170       180
                  ....*....|....*....|...
gi 4504221    165 FDVVIINDSLDQAYAELKEALSE 187
Cdd:TIGR03263 157 FDYVIVNDDLEKAVEELKSIILA 179
Guanylate_kin pfam00625
Guanylate kinase;
3-188 1.39e-85

Guanylate kinase;


Pssm-ID: 395500  Cd Length: 182  Bit Score: 250.38  E-value: 1.39e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      3 GPRPVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYG 82
Cdd:pfam00625   1 SRRPVVLSGPSGVGKSHIKKALLSEYPDKFGYSVPHTTRPPRKGEVDGKDYYFVSKEEMERDISANEFLEYAQFSGNMYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     83 TSKVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKep 162
Cdd:pfam00625  81 TSVETIEQIHEQGKIVILDVDPQGVKQLRKAELSPISVFIKPPSLKVLQRRLKGRGKEQEEKINKRMAAAEQEFQHYE-- 158

                         170       180
                  ....*....|....*....|....*.
gi 4504221    163 glFDVVIINDSLDQAYAELKEALSEE 188
Cdd:pfam00625 159 --FDVIIVNDDLEEAYKKLKEALEAE 182
Gmk COG0194
Guanylate kinase [Nucleotide transport and metabolism];
7-194 7.79e-81

Guanylate kinase [Nucleotide transport and metabolism];


Pssm-ID: 439964  Cd Length: 190  Bit Score: 238.43  E-value: 7.79e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    7 VVLSGPSGAGKSTLLKRLLQEHSGIfGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKV 86
Cdd:COG0194   5 IVLSGPSGAGKTTLVKALLERDPDL-RFSVSATTRPPRPGEVDGVDYHFVSREEFERMIENGEFLEWAEVHGNYYGTPKA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221   87 AVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpglFD 166
Cdd:COG0194  84 EVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRGRGTDSEEVIERRLAKAREELAHADE---FD 160

                       170       180
                ....*....|....*....|....*...
gi 4504221  167 VVIINDSLDQAYAELKEALSEEIKKAQR 194
Cdd:COG0194 161 YVVVNDDLDRAVEELKAIIRAERLRRER 188
gmk PRK00300
guanylate kinase; Provisional
 7-194 7.18e-78

guanylate kinase; Provisional


Pssm-ID: 234719  Cd Length: 205  Bit Score: 231.52  E-value: 7.18e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     7 VVLSGPSGAGKSTLLKRLLQEHSGIFgFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKV 86
Cdd:PRK00300   8 IVLSGPSGAGKSTLVKALLERDPNLQ-LSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTPRS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    87 AVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpglFD 166
Cdd:PRK00300  87 PVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASE---YD 163

                        170       180
                 ....*....|....*....|....*...
gi 4504221   167 VVIINDSLDQAYAELKEALSEEIKKAQR 194
Cdd:PRK00300 164 YVIVNDDLDTALEELKAIIRAERLRRSR 191
GuKc smart00072
Guanylate kinase homologues; Active enzymes catalyze ATP-dependent phosphorylation of GMP to ...
 13-189 3.11e-76

Guanylate kinase homologues; Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.


Pssm-ID: 214504 [Multi-domain]  Cd Length: 174  Bit Score: 226.41  E-value: 3.11e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      13 SGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKVAVQAVQ 92
Cdd:smart00072   1 SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLEWGEYEGNYYGTSKETIRQVA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      93 AMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMessKEPGLFDVVIIND 172
Cdd:smart00072  81 EKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRQRGTETSERIQKRLAAAQKEA---QEYHLFDYVIVND 157

                          170
                   ....*....|....*..
gi 4504221     173 SLDQAYAELKEALSEEI 189
Cdd:smart00072 158 DLEDAYEELKEILEAEQ 174
GMPK cd00071
Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), ...
 6-182 4.14e-73

Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.


Pssm-ID: 238026  Cd Length: 137  Bit Score: 217.01  E-value: 4.14e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    6 PVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSK 85
Cdd:cd00071   1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221   86 VAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPslhvleqrlrqrnteteeslvkrlaaaqadmesskepglf 165
Cdd:cd00071  81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP---------------------------------------- 120

                       170
                ....*....|....*..
gi 4504221  166 DVVIINDSLDQAYAELK 182
Cdd:cd00071 121 DYVIVNDDLEKAYEELK 137
 
Name Accession Description Interval E-value
guanyl_kin TIGR03263
guanylate kinase; Members of this family are the enzyme guanylate kinase, also called GMP ...
 5-187 2.15e-94

guanylate kinase; Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 213788  Cd Length: 179  Bit Score: 272.44  E-value: 2.15e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      5 RPVVLSGPSGAGKSTLLKRLLQEHSGIFgFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTS 84
Cdd:TIGR03263   1 LLIVISGPSGAGKSTLVKALLEEDPNLK-FSISATTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEWAEVHGNYYGTP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     85 KVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpgl 164
Cdd:TIGR03263  80 KSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADE--- 156

                         170       180
                  ....*....|....*....|...
gi 4504221    165 FDVVIINDSLDQAYAELKEALSE 187
Cdd:TIGR03263 157 FDYVIVNDDLEKAVEELKSIILA 179
Guanylate_kin pfam00625
Guanylate kinase;
3-188 1.39e-85

Guanylate kinase;


Pssm-ID: 395500  Cd Length: 182  Bit Score: 250.38  E-value: 1.39e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      3 GPRPVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYG 82
Cdd:pfam00625   1 SRRPVVLSGPSGVGKSHIKKALLSEYPDKFGYSVPHTTRPPRKGEVDGKDYYFVSKEEMERDISANEFLEYAQFSGNMYG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     83 TSKVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKep 162
Cdd:pfam00625  81 TSVETIEQIHEQGKIVILDVDPQGVKQLRKAELSPISVFIKPPSLKVLQRRLKGRGKEQEEKINKRMAAAEQEFQHYE-- 158

                         170       180
                  ....*....|....*....|....*.
gi 4504221    163 glFDVVIINDSLDQAYAELKEALSEE 188
Cdd:pfam00625 159 --FDVIIVNDDLEEAYKKLKEALEAE 182
Gmk COG0194
Guanylate kinase [Nucleotide transport and metabolism];
7-194 7.79e-81

Guanylate kinase [Nucleotide transport and metabolism];


Pssm-ID: 439964  Cd Length: 190  Bit Score: 238.43  E-value: 7.79e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    7 VVLSGPSGAGKSTLLKRLLQEHSGIfGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKV 86
Cdd:COG0194   5 IVLSGPSGAGKTTLVKALLERDPDL-RFSVSATTRPPRPGEVDGVDYHFVSREEFERMIENGEFLEWAEVHGNYYGTPKA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221   87 AVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpglFD 166
Cdd:COG0194  84 EVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRGRGTDSEEVIERRLAKAREELAHADE---FD 160

                       170       180
                ....*....|....*....|....*...
gi 4504221  167 VVIINDSLDQAYAELKEALSEEIKKAQR 194
Cdd:COG0194 161 YVVVNDDLDRAVEELKAIIRAERLRRER 188
gmk PRK00300
guanylate kinase; Provisional
 7-194 7.18e-78

guanylate kinase; Provisional


Pssm-ID: 234719  Cd Length: 205  Bit Score: 231.52  E-value: 7.18e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     7 VVLSGPSGAGKSTLLKRLLQEHSGIFgFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKV 86
Cdd:PRK00300   8 IVLSGPSGAGKSTLVKALLERDPNLQ-LSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTPRS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    87 AVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpglFD 166
Cdd:PRK00300  87 PVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASE---YD 163

                        170       180
                 ....*....|....*....|....*...
gi 4504221   167 VVIINDSLDQAYAELKEALSEEIKKAQR 194
Cdd:PRK00300 164 YVIVNDDLDTALEELKAIIRAERLRRSR 191
GuKc smart00072
Guanylate kinase homologues; Active enzymes catalyze ATP-dependent phosphorylation of GMP to ...
 13-189 3.11e-76

Guanylate kinase homologues; Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.


Pssm-ID: 214504 [Multi-domain]  Cd Length: 174  Bit Score: 226.41  E-value: 3.11e-76
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      13 SGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSKVAVQAVQ 92
Cdd:smart00072   1 SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLEWGEYEGNYYGTSKETIRQVA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      93 AMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMessKEPGLFDVVIIND 172
Cdd:smart00072  81 EKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRQRGTETSERIQKRLAAAQKEA---QEYHLFDYVIVND 157

                          170
                   ....*....|....*..
gi 4504221     173 SLDQAYAELKEALSEEI 189
Cdd:smart00072 158 DLEDAYEELKEILEAEQ 174
GMPK cd00071
Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), ...
 6-182 4.14e-73

Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.


Pssm-ID: 238026  Cd Length: 137  Bit Score: 217.01  E-value: 4.14e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    6 PVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTSK 85
Cdd:cd00071   1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221   86 VAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPslhvleqrlrqrnteteeslvkrlaaaqadmesskepglf 165
Cdd:cd00071  81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP---------------------------------------- 120

                       170
                ....*....|....*..
gi 4504221  166 DVVIINDSLDQAYAELK 182
Cdd:cd00071 121 DYVIVNDDLEKAYEELK 137
PLN02772 PLN02772
guanylate kinase
 3-186 7.12e-70

guanylate kinase


Pssm-ID: 215414 [Multi-domain]  Cd Length: 398  Bit Score: 217.78  E-value: 7.12e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     3 GPRPVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYG 82
Cdd:PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    83 TSKVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEP 162
Cdd:PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSS 293

                        170       180
                 ....*....|....*....|....
gi 4504221   163 GLFDVVIINDSLDQAYAELKEALS 186
Cdd:PLN02772 294 GIFDHILYNDNLEECYKNLKKLLG 317
gmk PRK14737
guanylate kinase; Provisional
 1-185 4.37e-49

guanylate kinase; Provisional


Pssm-ID: 173199  Cd Length: 186  Bit Score: 157.85  E-value: 4.37e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     1 MSGPRPVVLSGPSGAGKSTLLKRLLQEHSGIFgFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNL 80
Cdd:PRK14737   1 KASPKLFIISSVAGGGKSTIIQALLEEHPDFL-FSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNY 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    81 YGTSKVAVQAVQAMNRICVLDVDLQGVRNIKatDLRP---IYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADME 157
Cdd:PRK14737  80 YGTPKAFIEDAFKEGRSAIMDIDVQGAKIIK--EKFPeriVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELD 157

                        170       180
                 ....*....|....*....|....*...
gi 4504221   158 SSKEpglFDVVIINDSLDQAYAELKEAL 185
Cdd:PRK14737 158 EANE---FDYKIINDDLEDAIADLEAII 182
gmk PRK14738
guanylate kinase; Provisional
 4-188 2.89e-44

guanylate kinase; Provisional


Pssm-ID: 237809  Cd Length: 206  Bit Score: 146.03  E-value: 2.89e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     4 PRPVVLSGPSGAGKSTLLKRLLQEHSGiFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGT 83
Cdd:PRK14738  13 PLLVVISGPSGVGKDAVLARMRERKLP-FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    84 SKVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQPPSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEpg 163
Cdd:PRK14738  92 PKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPE-- 169

                        170       180
                 ....*....|....*....|....*..
gi 4504221   164 lFDVVIIN--DSLDQAYAELKEALSEE 188
Cdd:PRK14738 170 -FDYVVVNpeDRLDEAVAQIMAIISAE 195
PhnN COG3709
Ribose 1,5-bisphosphate kinase PhnN [Carbohydrate transport and metabolism];
1-193 4.01e-16

Ribose 1,5-bisphosphate kinase PhnN [Carbohydrate transport and metabolism];


Pssm-ID: 442923  Cd Length: 188  Bit Score: 72.53  E-value: 4.01e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    1 MSGP-RPVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSH--TTRNPRPGEENgkdYYFVTREVMQRDIAAGDFIEHAEFS 77
Cdd:COG3709   1 MSGPgRLIYVVGPSGAGKDSLLAAARARLAADPRLVFARryITRPADAGGED---HDALSEAEFARRAAAGAFALHWQAH 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221   78 GNLYGTSkVAVQAVQAMNRICVLDVD---LQGVRNiKATDLRPIYISVQPpslHVLEQRLRQRNTETEESLVKRLAAAQA 154
Cdd:COG3709  78 GLRYGIP-AEIDAWLAAGRDVVVNGSravLPQARA-RYPRLLVVLITASP---EVLAQRLAARGRESAEEIEARLARAAE 152

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 4504221  155 DMesskEPGLFDVVIIND-SLDQAYAELKEALSEEIKKAQ 193
Cdd:COG3709 153 FL----PDGPDVLVIDNDgPLEDAGARLLALLRAARARAA 188
phosphon_PhnN TIGR02322
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Members of this ...
 5-188 5.63e-10

phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see ), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. [Central intermediary metabolism, Phosphorus compounds]


Pssm-ID: 274078  Cd Length: 179  Bit Score: 55.83  E-value: 5.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      5 RPVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSHTTRNpRPGEENGKDYYFVTREVMQRDIAAGDFIEHAEFSGNLYGTS 84
Cdd:TIGR02322   2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVIT-RPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     85 KVAVQAVQAMNricvlDVDLQGVRNIKAT------DLRPIYISVQPpslHVLEQRLRQRNTETEESLVKRLAAAQADMES 158
Cdd:TIGR02322  81 IEIDQWLEAGD-----VVVVNGSRAVLPEarqrypNLLVVNITASP---DVLAQRLAARGRESREEIEERLARSARFAAA 152

                         170       180       190
                  ....*....|....*....|....*....|..
gi 4504221    159 SkepglFDVVIINDS--LDQAYAELKEALSEE 188
Cdd:TIGR02322 153 P-----ADVTTIDNSgsLEVAGETLLRLLRKE 179
PRK10078 PRK10078
ribose 1,5-bisphosphokinase; Provisional
 4-153 7.16e-06

ribose 1,5-bisphosphokinase; Provisional


Pssm-ID: 236648  Cd Length: 186  Bit Score: 44.74  E-value: 7.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     4 PRPVVLSGPSGAGKSTLLKRLLQ-EHSGIFgfsVSH--TTRNPRPGEENG---KDYYFVTREvmQRDIAAGDFIEHA--- 74
Cdd:PRK10078   2 GKLIWLMGPSGSGKDSLLAALRQrEQTQLL---VAHryITRPASAGSENHialSEQEFFTRA--GQNLFALSWHANGlyy 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    75 ----EFSGNLYGTSKVAVQAVQAMnricvldvdLQGVRNIKATDLRPIYISVQPPslhVLEQRLRQRNTETEESLVKRLA 150
Cdd:PRK10078  77 gvgiEIDLWLHAGFDVLVNGSRAH---------LPQARARYQSALLPVCLQVSPE---ILRQRLENRGRENASEINARLA 144


                 ...
gi 4504221   151 AAQ 153
Cdd:PRK10078 145 RAA 147
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
7-181 1.39e-05

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 43.36  E-value: 1.39e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221    7 VVLSGPSGAGKSTLLKRLLQEHSGI-----------FGFSVSHTTRNPRPGEEngkdyyfvTREVMQRdiAAGDFIEHae 75
Cdd:COG0645   2 ILVCGLPGSGKSTLARALAERLGAVrlrsdvvrkrlFGAGLAPLERSPEATAR--------TYARLLA--LARELLAA-- 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221   76 fsgnlyGTSkvavqavqamnriCVLD------VDLQGVRNI-KATDLRPIYISVQPPsLHVLEQRLRQRNTETEESL--V 146
Cdd:COG0645  70 ------GRS-------------VILDatflrrAQREAFRALaEEAGAPFVLIWLDAP-EEVLRERLEARNAEGGDSDatW 129

                       170       180       190
                ....*....|....*....|....*....|....*
gi 4504221  147 KRLAAAQADMESSKEPGLFDVVIINDSLDQAYAEL 181
Cdd:COG0645 130 EVLERQLAFEEPLTEDEGFLLVVDTSGLEEALAAL 164
FtsE COG2884
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
7-45 4.29e-05

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442130 [Multi-domain]  Cd Length: 223  Bit Score: 42.73  E-value: 4.29e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 4504221    7 VVLSGPSGAGKSTLLK---RLLQEHSG---IFGFSVSHTTRNPRP 45
Cdd:COG2884  31 VFLTGPSGAGKSTLLKllyGEERPTSGqvlVNGQDLSRLKRREIP 75
YjeQ_EngC cd01854
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ...
 7-42 5.29e-05

Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.


Pssm-ID: 206747 [Multi-domain]  Cd Length: 211  Bit Score: 42.39  E-value: 5.29e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 4504221    7 VVLSGPSGAGKSTLLKRLLQEHSGIFGfSVS-------HTTRN 42
Cdd:cd01854  88 SVLVGQSGVGKSTLLNALLPELVLATG-EISeklgrgrHTTTH 129
FetA COG4619
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
7-30 5.91e-05

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443661 [Multi-domain]  Cd Length: 209  Bit Score: 42.11  E-value: 5.91e-05
                        10        20
                ....*....|....*....|....*..
gi 4504221    7 VVLSGPSGAGKSTLLK---RLLQEHSG 30
Cdd:COG4619  29 VAITGPSGSGKSTLLRalaDLDPPTSG 55
PhnL COG4778
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ...
 7-22 2.86e-04

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];


Pssm-ID: 443809 [Multi-domain]  Cd Length: 229  Bit Score: 40.11  E-value: 2.86e-04
                        10
                ....*....|....*.
gi 4504221    7 VVLSGPSGAGKSTLLK 22
Cdd:COG4778  40 VALTGPSGAGKSTLLK 55
MMR_HSR1 pfam01926
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ...
 7-56 3.35e-04

50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.


Pssm-ID: 460387 [Multi-domain]  Cd Length: 113  Bit Score: 38.75  E-value: 3.35e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 4504221      7 VVLSGPSGAGKSTLLKRLLQEHSgifgfSVSH---TTRNPRPG--EENGKDYYFV 56
Cdd:pfam01926   2 VALVGRPNVGKSTLINALTGAKA-----IVSDypgTTRDPNEGrlELKGKQIILV 51
RsgA_GTPase pfam03193
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ...
 7-42 4.93e-04

RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.


Pssm-ID: 427191 [Multi-domain]  Cd Length: 174  Bit Score: 39.06  E-value: 4.93e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 4504221      7 VVLSGPSGAGKSTLLKRLLQEHSGIFGfSVS-------HTTRN 42
Cdd:pfam03193 109 TVLAGQSGVGKSTLLNALLPELDLRTG-EISeklgrgrHTTTH 150
COG4639 COG4639
Predicted kinase [General function prediction only];
7-27 6.83e-04

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 38.27  E-value: 6.83e-04
                        10        20
                ....*....|....*....|.
gi 4504221    7 VVLSGPSGAGKSTLLKRLLQE 27
Cdd:COG4639   5 VVLIGLPGSGKSTFARRLFAP 25
Ras_like_GTPase cd00882
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ...
 11-43 9.21e-04

Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.


Pssm-ID: 206648 [Multi-domain]  Cd Length: 161  Bit Score: 38.21  E-value: 9.21e-04
                        10        20        30
                ....*....|....*....|....*....|...
gi 4504221   11 GPSGAGKSTLLKRLLQEHSGIFGfSVSHTTRNP 43
Cdd:cd00882   4 GRGGVGKSSLLNALLGGEVGEVS-DVPGTTRDP 35
AAA_22 pfam13401
AAA domain;
1-28 1.07e-03

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 37.71  E-value: 1.07e-03
                          10        20
                  ....*....|....*....|....*...
gi 4504221      1 MSGPRPVVLSGPSGAGKSTLLKRLLQEH 28
Cdd:pfam13401   2 RFGAGILVLTGESGTGKTTLLRRLLEQL 29
CydC COG4987
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ...
 7-30 1.23e-03

ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444011 [Multi-domain]  Cd Length: 569  Bit Score: 38.98  E-value: 1.23e-03
                        10        20
                ....*....|....*....|....*..
gi 4504221    7 VVLSGPSGAGKSTLLK---RLLQEHSG 30
Cdd:COG4987 364 VAIVGPSGSGKSTLLAlllRFLDPQSG 390
ABCC_MRP_Like cd03228
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ...
 7-30 1.31e-03

ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213195 [Multi-domain]  Cd Length: 171  Bit Score: 37.75  E-value: 1.31e-03
                        10        20
                ....*....|....*....|....*..
gi 4504221    7 VVLSGPSGAGKSTLLK---RLLQEHSG 30
Cdd:cd03228  31 VAIVGPSGSGKSTLLKlllRLYDPTSG 57
PRK01889 PRK01889
GTPase RsgA; Reviewed
 2-28 1.42e-03

GTPase RsgA; Reviewed


Pssm-ID: 234988 [Multi-domain]  Cd Length: 356  Bit Score: 38.38  E-value: 1.42e-03
                         10        20
                 ....*....|....*....|....*..
gi 4504221     2 SGPRPVVLSGPSGAGKSTLLKRLLQEH 28
Cdd:PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGEE 219
Era_like cd00880
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family ...
 11-44 1.52e-03

E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.


Pssm-ID: 206646 [Multi-domain]  Cd Length: 161  Bit Score: 37.61  E-value: 1.52e-03
                        10        20        30
                ....*....|....*....|....*....|....
gi 4504221   11 GPSGAGKSTLLKRLLQEHSGIFGfSVSHTTRNPR 44
Cdd:cd00880   4 GRPNVGKSSLLNALLGQNVGIVS-PIPGTTRDPV 36
ABC_cobalt_CbiO_domain1 cd03225
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ...
 7-40 1.58e-03

First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213192 [Multi-domain]  Cd Length: 211  Bit Score: 37.83  E-value: 1.58e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 4504221    7 VVLSGPSGAGKSTLLK---RLLQEHSG---IFGFSVSHTT 40
Cdd:cd03225  30 VLIVGPNGSGKSTLLRllnGLLGPTSGevlVDGKDLTKLS 69
AAA_18 pfam13238
AAA domain;
7-141 1.71e-03

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 37.02  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      7 VVLSGPSGAGKSTLLKRLLQEHSgiFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFIEhaefsgnlygtskv 86
Cdd:pfam13238   1 ILITGTPGVGKTTLAKELSKRLG--FGDNVRDLALENGLVLGDDPETRESKRLDEDKLDRLLDLLE-------------- 64

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 4504221     87 aVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVqppSLHVLEQRLRQRNTET 141
Cdd:pfam13238  65 -ENAALEEGGNLIIDGHLAELEPERAKDLVGIVLRA---SPEELLERLEKRGYEE 115
COG4185 COG4185
Predicted ABC-type ATPase or kinase [General function prediction only];
1-34 2.31e-03

Predicted ABC-type ATPase or kinase [General function prediction only];


Pssm-ID: 443339  Cd Length: 197  Bit Score: 37.56  E-value: 2.31e-03
                        10        20        30
                ....*....|....*....|....*....|....
gi 4504221    1 MSGPRPVVLSGPSGAGKSTLLKRLLQEHSGIFGF 34
Cdd:COG4185   1 MAMPRLYIIAGPNGAGKSTFARTILPEELGGLEF 34
ABC_HisP_GlnQ cd03262
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ...
 7-42 2.71e-03

ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.


Pssm-ID: 213229 [Multi-domain]  Cd Length: 213  Bit Score: 37.12  E-value: 2.71e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 4504221    7 VVLSGPSGAGKSTLLK--RLLQEHSG----IFGFSVSHTTRN 42
Cdd:cd03262  29 VVIIGPSGSGKSTLLRciNLLEEPDSgtiiIDGLKLTDDKKN 70
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
 1-27 2.85e-03

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 37.13  E-value: 2.85e-03
                        10        20
                ....*....|....*....|....*...
gi 4504221    1 MSGPRPVVL-SGPSGAGKSTLLKRLLQE 27
Cdd:COG0572   3 RSGKPRIIGiAGPSGSGKTTFARRLAEQ 30
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 4-67 2.86e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 36.58  E-value: 2.86e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4504221       4 PRPVVLSGPSGAGKSTLLKRLLQE----HSGIFGFSVSHT---TRNPRPGEENGKDYYFVTREVMQRDIAA 67
Cdd:smart00382   2 GEVILIVGPPGSGKTTLARALARElgppGGGVIYIDGEDIleeVLDQLLLIIVGGKKASGSGELRLRLALA 72
ThiQ COG3840
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
7-45 2.93e-03

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];


Pssm-ID: 443051 [Multi-domain]  Cd Length: 232  Bit Score: 37.43  E-value: 2.93e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 4504221    7 VVLSGPSGAGKSTLLKRL---LQEHSG-IFGFSVSHTTRNP--RP 45
Cdd:COG3840  28 VAILGPSGAGKSTLLNLIagfLPPDSGrILWNGQDLTALPPaeRP 72
TIGR00152 TIGR00152
dephospho-CoA kinase; This model produces scores in the range of 0-25 bits against adenylate, ...
 7-187 3.01e-03

dephospho-CoA kinase; This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]


Pssm-ID: 272931  Cd Length: 190  Bit Score: 36.98  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221      7 VVLSGPSGAGKSTLLKRLLQEhsgiFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRDIAAGDFI-----------EHAE 75
Cdd:TIGR00152   2 IALTGGIGSGKSTVLQYLADK----YHFPVIDADKIAHQVVEPGQPAYHAIADHFGANILNQDGEldrkalgnyvfNDPE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4504221     76 FSGNLYGTSKVAVQavQAMNRI----------CVLDVDLqgvrNIKAtDLRPI--YISVQPPSLHVLEQRLRQRNTETEE 143
Cdd:TIGR00152  78 ELKWLNALTHPLIR--QWMKKLiaqfqskyalVLLDVPL----LFEN-NLRSLvdYVIVVERSPELQLERLMQRNDLTEE 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 4504221    144 SLVKRLaAAQADMESSKEPGlfDVVIINDSLDQaYAELKEALSE 187
Cdd:TIGR00152 151 EVKKRL-ASQMDIEEKLARI--DTVIDNSGPAT-LADLVKQLEE 190
MK0520 COG2401
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...
 7-30 3.43e-03

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];


Pssm-ID: 441957 [Multi-domain]  Cd Length: 222  Bit Score: 37.25  E-value: 3.43e-03
                        10        20
                ....*....|....*....|....
gi 4504221    7 VVLSGPSGAGKSTLLKRLLQEHSG 30
Cdd:COG2401  59 VLIVGASGSGKSTLLRLLAGALKG 82
ExeA COG3267
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ...
 1-27 3.93e-03

Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 442498 [Multi-domain]  Cd Length: 261  Bit Score: 37.07  E-value: 3.93e-03
                        10        20
                ....*....|....*....|....*..
gi 4504221    1 MSGPRPVVLSGPSGAGKSTLLKRLLQE 27
Cdd:COG3267  40 AQGGGFVVLTGEVGTGKTTLLRRLLER 66
AAA_14 pfam13173
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 4-28 4.48e-03

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 463799 [Multi-domain]  Cd Length: 128  Bit Score: 35.64  E-value: 4.48e-03
                          10        20
                  ....*....|....*....|....*
gi 4504221      4 PRPVVLSGPSGAGKSTLLKRLLQEH 28
Cdd:pfam13173   2 RKILVITGPRQVGKTTLLLQLIKEL 26
PRK00098 PRK00098
GTPase RsgA; Reviewed
 8-41 4.66e-03

GTPase RsgA; Reviewed


Pssm-ID: 234631 [Multi-domain]  Cd Length: 298  Bit Score: 36.72  E-value: 4.66e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 4504221     8 VLSGPSGAGKSTLLKRLL-------QEHSGIFGfSVSHTTR 41
Cdd:PRK00098 168 VLAGQSGVGKSTLLNALApdlelktGEISEALG-RGKHTTT 207
COG1373 COG1373
Predicted ATPase, AAA+ superfamily [General function prediction only];
1-32 5.16e-03

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440984 [Multi-domain]  Cd Length: 405  Bit Score: 36.85  E-value: 5.16e-03
                        10        20        30
                ....*....|....*....|....*....|..
gi 4504221    1 MSGPRPVVLSGPSGAGKSTLLKRLLQEHSGIF 32
Cdd:COG1373  17 LDNRKAVVITGPRQVGKTTLLKQLAKELENIL 48
ABC_FtsE cd03292
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ...
 7-27 5.18e-03

Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages


Pssm-ID: 213259 [Multi-domain]  Cd Length: 214  Bit Score: 36.62  E-value: 5.18e-03
                        10        20
                ....*....|....*....|.
gi 4504221    7 VVLSGPSGAGKSTLLKRLLQE 27
Cdd:cd03292  30 VFLVGPSGAGKSTLLKLIYKE 50
RecA-like_CDC48_NLV2_r1-like cd19503
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ...
 4-47 5.61e-03

first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410911 [Multi-domain]  Cd Length: 165  Bit Score: 36.12  E-value: 5.61e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 4504221    4 PRPVVLSGPSGAGKsTLLKRLLQEHSGIFGFSVS-HTTRNPRPGE 47
Cdd:cd19503  34 PRGVLLHGPPGTGK-TLLARAVANEAGANFLSISgPSIVSKYLGE 77
artP PRK11124
arginine transporter ATP-binding subunit; Provisional
 7-24 5.78e-03

arginine transporter ATP-binding subunit; Provisional


Pssm-ID: 182980 [Multi-domain]  Cd Length: 242  Bit Score: 36.53  E-value: 5.78e-03
                         10
                 ....*....|....*...
gi 4504221     7 VVLSGPSGAGKSTLLKRL 24
Cdd:PRK11124  31 LVLLGPSGAGKSSLLRVL 48
CydD COG4988
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ...
 7-25 5.83e-03

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444012 [Multi-domain]  Cd Length: 563  Bit Score: 37.04  E-value: 5.83e-03
                        10
                ....*....|....*....
gi 4504221    7 VVLSGPSGAGKSTLLKRLL 25
Cdd:COG4988 366 VALVGPSGAGKSTLLNLLL 384
COG4559 COG4559
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
7-30 6.21e-03

ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443620 [Multi-domain]  Cd Length: 258  Bit Score: 36.25  E-value: 6.21e-03
                        10        20
                ....*....|....*....|....*..
gi 4504221    7 VVLSGPSGAGKSTLLKRL---LQEHSG 30
Cdd:COG4559  30 TAIIGPNGAGKSTLLKLLtgeLTPSSG 56
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 7-32 6.23e-03

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 35.75  E-value: 6.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 4504221      7 VVLSGPSGAGKSTLLKRLLQEHSGIF 32
Cdd:pfam13671   2 ILLVGLPGSGKSTLARRLLEELGAVR 27
MalK COG3839
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ...
 7-22 6.31e-03

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];


Pssm-ID: 443050 [Multi-domain]  Cd Length: 352  Bit Score: 36.59  E-value: 6.31e-03
                        10
                ....*....|....*.
gi 4504221    7 VVLSGPSGAGKSTLLK 22
Cdd:COG3839  32 LVLLGPSGCGKSTLLR 47
GlnQ COG1126
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ...
 7-44 7.45e-03

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440743 [Multi-domain]  Cd Length: 239  Bit Score: 36.13  E-value: 7.45e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 4504221    7 VVLSGPSGAGKSTLLkR---LLQEHSG----IFGFSVSHTTRNPR 44
Cdd:COG1126  30 VVIIGPSGSGKSTLL-RcinLLEEPDSgtitVDGEDLTDSKKDIN 73
ABC_tran pfam00005
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...
 7-33 7.69e-03

ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.


Pssm-ID: 394964 [Multi-domain]  Cd Length: 150  Bit Score: 35.32  E-value: 7.69e-03
                          10        20
                  ....*....|....*....|....*..
gi 4504221      7 VVLSGPSGAGKSTLLKRLLQEHSGIFG 33
Cdd:pfam00005  14 LALVGPNGAGKSTLLKLIAGLLSPTEG 40
CydD TIGR02857
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ...
 7-25 7.80e-03

thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD


Pssm-ID: 274323 [Multi-domain]  Cd Length: 529  Bit Score: 36.50  E-value: 7.80e-03
                          10
                  ....*....|....*....
gi 4504221      7 VVLSGPSGAGKSTLLKRLL 25
Cdd:TIGR02857 351 VALVGPSGAGKSTLLNLLL 369
NK cd02019
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ...
 7-39 7.92e-03

Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.


Pssm-ID: 238977 [Multi-domain]  Cd Length: 69  Bit Score: 33.85  E-value: 7.92e-03
                        10        20        30
                ....*....|....*....|....*....|...
gi 4504221    7 VVLSGPSGAGKSTLLKRlLQEHSGIFGFSVSHT 39
Cdd:cd02019   2 IAITGGSGSGKSTVAKK-LAEQLGGRSVVVLDE 33
ArtP COG4161
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
7-24 8.23e-03

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443326 [Multi-domain]  Cd Length: 242  Bit Score: 36.14  E-value: 8.23e-03
                        10
                ....*....|....*...
gi 4504221    7 VVLSGPSGAGKSTLLKRL 24
Cdd:COG4161  31 LVLLGPSGAGKSSLLRVL 48
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 2-27 8.31e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 35.56  E-value: 8.31e-03
                          10        20
                  ....*....|....*....|....*.
gi 4504221      2 SGPRPVVLSGPSGAGKSTLLKRLLQE 27
Cdd:pfam13191  22 GRPPSVLLTGEAGTGKTTLLRELLRA 47
CobW-like cd03112
cobalamin synthesis protein CobW; The function of this protein family is unknown. The amino ...
 6-30 8.53e-03

cobalamin synthesis protein CobW; The function of this protein family is unknown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.


Pssm-ID: 349766  Cd Length: 198  Bit Score: 35.57  E-value: 8.53e-03
                        10        20
                ....*....|....*....|....*.
gi 4504221    6 PV-VLSGPSGAGKSTLLKRLLQEHSG 30
Cdd:cd03112   1 PVtLLTGFLGAGKTTLLNHILSEQHG 26
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 4-27 8.93e-03

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 35.20  E-value: 8.93e-03
                        10        20
                ....*....|....*....|....
gi 4504221    4 PRPVVLSGPSGAGKSTLLKRLLQE 27
Cdd:cd00009  19 PKNLLLYGPPGTGKTTLARAIANE 42
FepC COG1120
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...
 7-30 9.03e-03

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];


Pssm-ID: 440737 [Multi-domain]  Cd Length: 254  Bit Score: 35.79  E-value: 9.03e-03
                        10        20
                ....*....|....*....|....*..
gi 4504221    7 VVLSGPSGAGKSTLLK---RLLQEHSG 30
Cdd:COG1120  30 TALLGPNGSGKSTLLRalaGLLKPSSG 56
hmuV PRK13548
hemin importer ATP-binding subunit; Provisional
 7-27 9.77e-03

hemin importer ATP-binding subunit; Provisional


Pssm-ID: 237422 [Multi-domain]  Cd Length: 258  Bit Score: 35.90  E-value: 9.77e-03
                         10        20
                 ....*....|....*....|.
gi 4504221     7 VVLSGPSGAGKSTLLKRLLQE 27
Cdd:PRK13548  31 VAILGPNGAGKSTLLRALSGE 51
ABC_ATPase cd00267
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...
 7-45 9.88e-03

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213179 [Multi-domain]  Cd Length: 157  Bit Score: 35.30  E-value: 9.88e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 4504221    7 VVLSGPSGAGKSTLLK---RLLQEHSGIFGFSVSHTTRNPRP 45
Cdd:cd00267  28 VALVGPNGSGKSTLLRaiaGLLKPTSGEILIDGKDIAKLPLE 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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