|
Name |
Accession |
Description |
Interval |
E-value |
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
1-477 |
0e+00 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 872.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 1 MAKITKEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMN 80
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 81 GLLEAAPAAAPTLADVAAEKKQALKGRQTSAVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFVLEnAHPNASLVA 160
Cdd:PRK09586 81 ELLGEAAAPVQDLAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVP-ADAQGTLPD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 161 LIGYMKVFSKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFVLGYNPEATSGFYAGISTFFGHGIDPRGNIIGVLIAAI 240
Cdd:PRK09586 160 ALNYMKVFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 241 LGAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGNPFGSAVLAGLFLLAVMFGVHQ 320
Cdd:PRK09586 240 AGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 321 GFVPVYFALVDAQGFNSLFPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKPFVTA 400
Cdd:PRK09586 320 GFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPRMKPFVTA 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 985348059 401 CLGGACGGFFVGLIAWLGLPVGLNTVFGPSGLVALPLMTSGSGIYAGMAVYAGGLAVSYLCGFVLTWLFGSKNVDLS 477
Cdd:PRK09586 400 CLGGAAGGFFIGLIAWLGLPVGLNSVFGPSGLVALPLMTSAQGILPGMAVYAGGLLVAYVCGFIFTTLFGCKNVDLD 476
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
105-475 |
8.09e-68 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 224.05 E-value: 8.09e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 105 KGRQTSAVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFVLENAHPNASLVALigyMKVFSKGMFTFLSILIGYNA 184
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGSFLSGTYQI---LNAAGDAVFYFLPLLFAIGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 185 QKAFGGSGVNGAIIASLFVLGYNPEATsGFYAGISTFFG--HGIDPRGNIIGVLIAAILGAWVERQVRRVMPANLDMILT 262
Cdd:COG1263 78 AKGFGGNPALAAVIGYLLVHPTLLNAY-AVAGGYISFLGipTLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 263 SAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGN--PFGSAVLAGLFLLAVMFGVHQGFVPVYFALVDAQGFNSLFP 340
Cdd:COG1263 157 PILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLagAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFP 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 341 ILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFL-GIGEPLIYGVTLPRMKPFVTACLGGACGGFFVGLIAWLGl 419
Cdd:COG1263 237 ILAAAMFGQPGAALAVYLKAKPNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA- 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 985348059 420 pvglnTVFGPSGLVALPLMTSGSGiyAGMAVYAGGLAVSYLCGFVLTWLFGSKNVD 475
Cdd:COG1263 316 -----FSFGVGGLIDFPSILNPGA--TNLLLYLIGLVIAFVYYFVFTFLIGREDEE 364
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
6-472 |
1.06e-63 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 217.22 E-value: 1.06e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 6 KEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMNgllea 85
Cdd:TIGR01995 2 QDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMD----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 86 apaaaPTLADVAAEKKQALKGRqtSAVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFVLEnahPNASLVALIGYM 165
Cdd:TIGR01995 77 -----VLGLDDQAEDDDSKGKK--SILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLIS---ADSQTYQILNAM 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 166 kvfSKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFVlgyNPEATSGFYAGIS-TFFGHGIDP---RGNIIGVLIAAIL 241
Cdd:TIGR01995 147 ---GDAVFYFLPILLAITAAKRFKVNPYLAAAIGAALL---HPTLVAMVGSGKPvTFFGIPVTLmsySSSVIPVILAVWL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 242 GAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGNP--FGSAVLAGLFLLAVMFGVH 319
Cdd:TIGR01995 221 MSYVEKFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSpwLAGALLAALWPVLVMFGLH 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 320 QGFVPVYFALVDAQGFNSLF-PILAMAGAGQVGAALALFWRAKrDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKPFV 398
Cdd:TIGR01995 301 WAMIPIVINNIATQGFDPLIlPASLAANFAQGGAALAVMLRTK-NKKLKALAGSATISALFGITEPAIYGVNLPLKKPFY 379
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985348059 399 TACLGGACGGFFVGLIAwlglpVGLNTVFGPsGLVALPlMTSGSGIYAGMAVYAGGLAVSYLCGFVLTWLFGSK 472
Cdd:TIGR01995 380 AAMIGGAVGGAIIGIGS-----VKAFTAFAP-GLLGLP-MFINPSDGANFISALIAIVISFVVSFVLTYFIGFK 446
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
122-404 |
2.08e-28 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 114.37 E-value: 2.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 122 IFTPLIPGFIAVGLLLGFATLAEQVFVLENAHPNAsLVALIGYMKVFSKGMFTFLSILIGYNAQKAF-GGSGVNGAIIAS 200
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTG-DSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 201 LFVLGYNPEATSGF--------YAGISTFFGHGIDPRGNIIGVLIAAILGAWVERQVRRVMPANLDMILTSAVTLLIMGA 272
Cdd:pfam02378 82 GLLSFNLAAAISVAltaaglsgGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 273 VTFTVIMPIGGWLFTGMS------WLFLHLNGNPFGSAVLAGLFLLAVMFGVHQGFVPVYFALV---------------D 331
Cdd:pfam02378 162 VTLLVIGPVLGLIWPAIQgglnalGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnpianqqaygaG 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985348059 332 AQGFNSLFPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKP-FVTACLGG 404
Cdd:pfam02378 242 AAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPfFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
6-83 |
8.34e-28 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 105.69 E-value: 8.34e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 985348059 6 KEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMNGLL 83
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
1-477 |
0e+00 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 872.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 1 MAKITKEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMN 80
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 81 GLLEAAPAAAPTLADVAAEKKQALKGRQTSAVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFVLEnAHPNASLVA 160
Cdd:PRK09586 81 ELLGEAAAPVQDLAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVP-ADAQGTLPD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 161 LIGYMKVFSKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFVLGYNPEATSGFYAGISTFFGHGIDPRGNIIGVLIAAI 240
Cdd:PRK09586 160 ALNYMKVFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 241 LGAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGNPFGSAVLAGLFLLAVMFGVHQ 320
Cdd:PRK09586 240 AGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 321 GFVPVYFALVDAQGFNSLFPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKPFVTA 400
Cdd:PRK09586 320 GFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPRMKPFVTA 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 985348059 401 CLGGACGGFFVGLIAWLGLPVGLNTVFGPSGLVALPLMTSGSGIYAGMAVYAGGLAVSYLCGFVLTWLFGSKNVDLS 477
Cdd:PRK09586 400 CLGGAAGGFFIGLIAWLGLPVGLNSVFGPSGLVALPLMTSAQGILPGMAVYAGGLLVAYVCGFIFTTLFGCKNVDLD 476
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
105-475 |
8.09e-68 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 224.05 E-value: 8.09e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 105 KGRQTSAVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFVLENAHPNASLVALigyMKVFSKGMFTFLSILIGYNA 184
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGSFLSGTYQI---LNAAGDAVFYFLPLLFAIGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 185 QKAFGGSGVNGAIIASLFVLGYNPEATsGFYAGISTFFG--HGIDPRGNIIGVLIAAILGAWVERQVRRVMPANLDMILT 262
Cdd:COG1263 78 AKGFGGNPALAAVIGYLLVHPTLLNAY-AVAGGYISFLGipTLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 263 SAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGN--PFGSAVLAGLFLLAVMFGVHQGFVPVYFALVDAQGFNSLFP 340
Cdd:COG1263 157 PILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLagAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFP 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 341 ILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFL-GIGEPLIYGVTLPRMKPFVTACLGGACGGFFVGLIAWLGl 419
Cdd:COG1263 237 ILAAAMFGQPGAALAVYLKAKPNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA- 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 985348059 420 pvglnTVFGPSGLVALPLMTSGSGiyAGMAVYAGGLAVSYLCGFVLTWLFGSKNVD 475
Cdd:COG1263 316 -----FSFGVGGLIDFPSILNPGA--TNLLLYLIGLVIAFVYYFVFTFLIGREDEE 364
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
6-472 |
1.06e-63 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 217.22 E-value: 1.06e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 6 KEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMNgllea 85
Cdd:TIGR01995 2 QDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMD----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 86 apaaaPTLADVAAEKKQALKGRqtSAVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFVLEnahPNASLVALIGYM 165
Cdd:TIGR01995 77 -----VLGLDDQAEDDDSKGKK--SILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLIS---ADSQTYQILNAM 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 166 kvfSKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFVlgyNPEATSGFYAGIS-TFFGHGIDP---RGNIIGVLIAAIL 241
Cdd:TIGR01995 147 ---GDAVFYFLPILLAITAAKRFKVNPYLAAAIGAALL---HPTLVAMVGSGKPvTFFGIPVTLmsySSSVIPVILAVWL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 242 GAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGNP--FGSAVLAGLFLLAVMFGVH 319
Cdd:TIGR01995 221 MSYVEKFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSpwLAGALLAALWPVLVMFGLH 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 320 QGFVPVYFALVDAQGFNSLF-PILAMAGAGQVGAALALFWRAKrDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKPFV 398
Cdd:TIGR01995 301 WAMIPIVINNIATQGFDPLIlPASLAANFAQGGAALAVMLRTK-NKKLKALAGSATISALFGITEPAIYGVNLPLKKPFY 379
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985348059 399 TACLGGACGGFFVGLIAwlglpVGLNTVFGPsGLVALPlMTSGSGIYAGMAVYAGGLAVSYLCGFVLTWLFGSK 472
Cdd:TIGR01995 380 AAMIGGAVGGAIIGIGS-----VKAFTAFAP-GLLGLP-MFINPSDGANFISALIAIVISFVVSFVLTYFIGFK 446
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
6-470 |
4.61e-52 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 186.07 E-value: 4.61e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 6 KEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGpgkaQTAAEMMNGLLEA 85
Cdd:PRK09824 4 TELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIG----NHVADVFLAVNSV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 86 APAAAPTLADVAAEKKQALKGRqtsavqkFLAKFATIFTPLIPGFIAVGLLLGFATLAeqvFVLENAHPNAslvaliGYM 165
Cdd:PRK09824 80 AGLGEKAQQAPENDKKGNLLNR-------FIDVISGIFTPLIGVMAATGILKGMLALA---LTFGWTTEQS------GTY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 166 KVF---SKGMFTFLSILIGYNAQKAFGG----SGVNGA------IIASlFVLGYNPEATSGFYAGISTFFghgIDPRGNI 232
Cdd:PRK09824 144 KILfaaSDALFFFFPIILGYTAGKKFGGnpftAMVIGGalvhplMIAA-FEAGQKADALGLDFLGIPVTL---LNYSSSV 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 233 IGVLIAAILGAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGW----LFTGMSWLFlhlNGNP-FGSAVLA 307
Cdd:PRK09824 220 IPIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWlselLAAGYQWLY---QAVPaFAGAVMG 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 308 GLFLLAVMFGVHQGFVPVYFALVDAQGFNSLFPILAMAGAGQVGAALALFWRAkRDSLLRTQIKGAIIPGFLGIGEPLIY 387
Cdd:PRK09824 297 AFWQVFVIFGLHWGLVPLMINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCT-RDAQKKVVAGSAFLAGLFGITEPAVY 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 388 GVTLPRMKPFVTACLGGACGGFFVGLIAWLGLPVGLNTVFGPSGlvalplMTSGSGIYAgmAVYAG--GLAVSYLCGFVL 465
Cdd:PRK09824 376 GVNLPLKRPFIFGCISGALGAAIIGYAQTKVYSFGLPSIFTFMQ------TIPPTGIDF--TVWASviGTVIAIGCAFVG 447
|
....*
gi 985348059 466 TWLFG 470
Cdd:PRK09824 448 TVMFG 452
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-413 |
2.59e-37 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 142.52 E-value: 2.59e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 1 MAKITKEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGpgkaQTAAEMMN 80
Cdd:PRK11007 2 MSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIG----TEVGDYYK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 81 GLLEaapaaapTLADVAAEKKQA-LKGRQT-SAVQKFLAKFATIFTPLIPGFIAVGLLLGF------------ATLAEQV 146
Cdd:PRK11007 78 ALIA-------TTGQAEVDKEQAkKAARQNmKWHERLISHFAEIFFPLLPALISGGLILGFrnvigdipmsdgQTLAQMY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 147 FVLENAHpnaSLVALIGymkvfsKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFVlgyNPEATSGFYAGIST------ 220
Cdd:PRK11007 151 PFWQTIY---DFLWLIG------EAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLV---SPQLMNAYLLGQQLpevwdf 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 221 --FFGHGIDPRGNIIGVLIAAILGAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHL-N 297
Cdd:PRK11007 219 glFSIEKVGYQAQVIPALLAGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALmT 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 298 GN--PFGSAVLAGLFLLAVMFGVHQGFVPVYFALVDAQGFNSLFPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAiI 375
Cdd:PRK11007 299 GSfaPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAA-I 377
|
410 420 430
....*....|....*....|....*....|....*...
gi 985348059 376 PGFLGIGEPLIYGVTLPRMKPFVTACLGGACGGFFVGL 413
Cdd:PRK11007 378 SAYLGVTEPAMYGINLKYRFPMLCAMIGSALAGLICGL 415
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-407 |
8.65e-29 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 118.36 E-value: 8.65e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 1 MAKITKEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMN 80
Cdd:PRK09796 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 81 GLLEAAPAaaptlADVAAEKKQALKGRQTsavqKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFVLENAHPNASLVA 160
Cdd:PRK09796 81 LLPGDMQP-----AQPVGKPKLTLRRIGA----GILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 161 LIGymkvfsKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFV----LGYNPEATSG---FYAGISTffgHGIDPRGNII 233
Cdd:PRK09796 152 VIG------DGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVhpsfIELMAKAAQGehvEFALIPV---TAVKYTYTVI 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 234 GVLIAAILGAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWL--FLHLNGNPFGSAVLAGLFL 311
Cdd:PRK09796 223 PALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALvyTIHGYLGWLSVAIMGALWP 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 312 LAVMFGVHQGFVPVYFALVDAQGFNSL-FPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFLGIGEPLIYGVT 390
Cdd:PRK09796 303 LLVMTGMHRVFTPTIIQTIAETGKEGMvMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVA 382
|
410
....*....|....*....
gi 985348059 391 LpRMKPFVTACL--GGACG 407
Cdd:PRK09796 383 I-RLKRPLIASLisGFICG 400
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
122-404 |
2.08e-28 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 114.37 E-value: 2.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 122 IFTPLIPGFIAVGLLLGFATLAEQVFVLENAHPNAsLVALIGYMKVFSKGMFTFLSILIGYNAQKAF-GGSGVNGAIIAS 200
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTG-DSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 201 LFVLGYNPEATSGF--------YAGISTFFGHGIDPRGNIIGVLIAAILGAWVERQVRRVMPANLDMILTSAVTLLIMGA 272
Cdd:pfam02378 82 GLLSFNLAAAISVAltaaglsgGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 273 VTFTVIMPIGGWLFTGMS------WLFLHLNGNPFGSAVLAGLFLLAVMFGVHQGFVPVYFALV---------------D 331
Cdd:pfam02378 162 VTLLVIGPVLGLIWPAIQgglnalGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnpianqqaygaG 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 985348059 332 AQGFNSLFPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKP-FVTACLGG 404
Cdd:pfam02378 242 AAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPfFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
6-83 |
8.34e-28 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 105.69 E-value: 8.34e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 985348059 6 KEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMNGLL 83
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
6-80 |
1.61e-25 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 99.42 E-value: 1.61e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 985348059 6 KEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIdGVMGVIVSDEQFQVVLGPGKAQTAAEMMN 80
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEK 74
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
173-450 |
1.27e-24 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 103.17 E-value: 1.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 173 FTFLSILIGYNAQKAFGGSGVNGAIIASLFVLGYNPEATSGFYAGISTFFGHGIDP---RGNIIGVLIAAILGAWVERQV 249
Cdd:TIGR00852 5 FFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVGNFFGFEIAKvgyTGVVGPIIVGAIALALHERFL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 250 RRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGW-----LFTGMSWLFLHlnGNPFGSAVLAGLFLLAVMFGVHQGFVP 324
Cdd:TIGR00852 85 DKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVwppvgISALLHWLYSA--GGALGGAIFGFLYRLLVPTGLHHIFYA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985348059 325 VYFALV---DAQGFNSLFPILAMAGAGQVGAALALFWRAKrDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKPFVTAC 401
Cdd:TIGR00852 163 IFIQLIaggTVIGGGQVIPGDALANMAQGGAALAVFFTAG-DAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFVAGL 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 985348059 402 LGGACGGFFVGLIawlGLPVGLNTVFGPSGLVAL--PLMTSGSGIYAGMAV 450
Cdd:TIGR00852 242 IGSALLTAFLTGI---TEPLEFLFLFGAPGLYSIhaVLAGSIFTVAIGMGI 289
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
7-84 |
1.14e-10 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 63.13 E-value: 1.14e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 985348059 7 EMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMNGLLE 84
Cdd:PRK14905 276 EIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGIVEKIHEEMKALLA 353
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
10-41 |
1.75e-10 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 55.45 E-value: 1.75e-10
10 20 30
....*....|....*....|....*....|..
gi 985348059 10 ARILAHVGGAANVAQAGNCMTRLRLTLRDESL 41
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
12-83 |
2.49e-07 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 53.20 E-value: 2.49e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 985348059 12 ILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQiDGVMGVIVSDEQ-FQVVLGPgKAQTAAEMMNGLL 83
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKD-NRAIGVVQLNQHnLQVVIGP-QVQSVKDEMAGLM 525
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
12-68 |
2.39e-06 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 45.43 E-value: 2.39e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 985348059 12 ILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQiDGVMGVIVSDEQFQVVLG 68
Cdd:TIGR00826 33 QIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKK-LGAHGVNPLQRAVQVISG 88
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
30-70 |
1.07e-04 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 40.80 E-value: 1.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 985348059 30 TRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPG 70
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTG 41
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
10-68 |
2.35e-04 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 41.62 E-value: 2.35e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 985348059 10 ARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLG 68
Cdd:PRK09702 74 AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIG 132
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-69 |
9.99e-04 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 41.62 E-value: 9.99e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 985348059 2 AKITKEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIdGVMGVIVSDEQFQVVLGP 69
Cdd:PRK11089 395 ATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKL-GAAGVVVAGSGVQAIFGT 461
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
13-83 |
6.82e-03 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 39.08 E-value: 6.82e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 985348059 13 LAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIdGVMGVIVSDEQ-FQVVLGpGKAQTAAEMMNGLL 83
Cdd:PRK10255 397 IAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRL-GASGVVKLNKQtIQVIVG-AKAESIGDAMKKVV 466
|
|
|