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Conserved domains on  [gi|857338188|gb|KMO05584|]
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hypothetical protein VL16_01630 [Chromobacterium violaceum]

Protein Classification

flagell_flgL family protein( domain architecture ID 11494486)

flagell_flgL family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-307 1.09e-93

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


:

Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 280.00  E-value: 1.09e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188    2 RISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTLQ 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   82 NVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASppvTTYNG 161
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGE---VTYNG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  162 DNGQRSVQVSASRTMTISDPGNVVFGIPGGSPTATFDALANLYDLLGQ---NPKPANFPSQISTIINQISNATQQLSIAQ 238
Cdd:TIGR02550 158 DGGQRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKledALSSGDAKAALSASLNDLDKALDNVLSAR 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 857338188  239 ASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:TIGR02550 238 AEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDYL 306
 
Name Accession Description Interval E-value
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-307 1.09e-93

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 280.00  E-value: 1.09e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188    2 RISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTLQ 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   82 NVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASppvTTYNG 161
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGE---VTYNG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  162 DNGQRSVQVSASRTMTISDPGNVVFGIPGGSPTATFDALANLYDLLGQ---NPKPANFPSQISTIINQISNATQQLSIAQ 238
Cdd:TIGR02550 158 DGGQRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKledALSSGDAKAALSASLNDLDKALDNVLSAR 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 857338188  239 ASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:TIGR02550 238 AEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDYL 306
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-307 1.82e-73

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 228.36  E-value: 1.82e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK07192   1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASppVTTYN 160
Cdd:PRK07192  81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASNTQPITFDAAGG--TYTYN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRSVQVSASRTMTISDPGNVVFGipgGSPTATFDALANLYDLL---GQNPKPANFPSQISTIINQISNATQQLSIA 237
Cdd:PRK07192 159 GNSDQRQVQVGEGVQMPVNVTGQSVFQ---GGGLDVFNTLDKLIDLLetpALPAADAALTAAVDEALGAIDDALDNVLTV 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 238 QASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:PRK07192 236 RTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINSLSLFNLI 305
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-308 1.69e-51

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 170.05  E-value: 1.69e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVnmnasppvtTYN 160
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQV---------DYQ 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRsvqvsasrtmtisdpgnvvfgipggsptatfdalanlydllgqnpkpanfpsqiSTIINQISNATQQLSIAQAS 240
Cdd:COG1344  152 GDAGQR------------------------------------------------------TAALGALDAALDNVSSARAE 177

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 857338188 241 VGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYIS 308
Cdd:COG1344  178 LGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLSLLDLLR 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 1.18e-13

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 66.98  E-value: 1.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188    3 ISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTLQN 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 857338188   83 VVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGN 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
 
Name Accession Description Interval E-value
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-307 1.09e-93

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 280.00  E-value: 1.09e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188    2 RISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTLQ 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   82 NVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASppvTTYNG 161
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGE---VTYNG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  162 DNGQRSVQVSASRTMTISDPGNVVFGIPGGSPTATFDALANLYDLLGQ---NPKPANFPSQISTIINQISNATQQLSIAQ 238
Cdd:TIGR02550 158 DGGQRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKledALSSGDAKAALSASLNDLDKALDNVLSAR 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 857338188  239 ASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:TIGR02550 238 AEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDYL 306
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-307 1.82e-73

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 228.36  E-value: 1.82e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK07192   1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASppVTTYN 160
Cdd:PRK07192  81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASNTQPITFDAAGG--TYTYN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRSVQVSASRTMTISDPGNVVFGipgGSPTATFDALANLYDLL---GQNPKPANFPSQISTIINQISNATQQLSIA 237
Cdd:PRK07192 159 GNSDQRQVQVGEGVQMPVNVTGQSVFQ---GGGLDVFNTLDKLIDLLetpALPAADAALTAAVDEALGAIDDALDNVLTV 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 238 QASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:PRK07192 236 RTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINSLSLFNLI 305
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-307 1.74e-66

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 213.62  E-value: 1.74e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK08870   1 MRISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASppvTTYN 160
Cdd:PRK08870  81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQSGTQPFAFDASGN---VVYS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRSVQVSASRTMTISDPGNVVF-GIPG------------------------------------------------- 190
Cdd:PRK08870 158 GDQGQRQVQVADSVQVATNDPGDEVFmSVPNgggdyvpnanasntgtgllgsasitdpsdpvngdtytitftdngaggtn 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 191 ---------------------------------GSPTAT-------------FDALANLYDLL----GQNPKPANFPSQI 220
Cdd:PRK08870 238 tyvtdsstgtvvtaqaydagqpinfngvevqisGAPAAGdsftltpapqasiFDTLDDAIAALespvSTPAADAALQNAL 317

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 221 STIINQISNATQQLSIAQASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQ 300
Cdd:PRK08870 318 AQALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQAAQQAFSKVQS 397


                 ....*..
gi 857338188 301 LSLFSYI 307
Cdd:PRK08870 398 LSLFNYI 404
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-308 1.69e-51

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 170.05  E-value: 1.69e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVnmnasppvtTYN 160
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQV---------DYQ 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRsvqvsasrtmtisdpgnvvfgipggsptatfdalanlydllgqnpkpanfpsqiSTIINQISNATQQLSIAQAS 240
Cdd:COG1344  152 GDAGQR------------------------------------------------------TAALGALDAALDNVSSARAE 177

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 857338188 241 VGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYIS 308
Cdd:COG1344  178 LGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLSLLDLLR 245
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-303 4.88e-38

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 136.66  E-value: 4.88e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK07701   1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANaTDGNGNFLFSGNAVTTAPFSVNmnasPPVTTYN 160
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIAN-TQYNGRYIFNGTKTDTPPVTDD----GDNIENS 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRSVQVSASRTMTISDPGNVVFGIPGGSPTATFDALANLYDLLgQNPKPANfpsqISTIINQISNATQQLSIAQAS 240
Cdd:PRK07701 156 TDSGDIEFEIAKGNTINVNVPGDKAFGGQSGGGSNLFEMLDNLENAL-DSGDTQG----VSNLLSDIDQHIDNVLAVRAE 230

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 857338188 241 VGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSL 303
Cdd:PRK07701 231 LGARSNRLELIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARIIQPSL 293
flgL PRK08027
flagellar hook-filament junction protein FlgL;
1-304 4.84e-36

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 131.80  E-value: 4.84e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK08027   1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLS-------PTQLQQLQktvaegiSELTGYANATDGNGNFLFSGNAVTTAPFSVNmnas 153
Cdd:PRK08027  81 SQVTTAIQNAQEKIVYAGNGTLSdddraslATDLQGLR-------DQLLNLANTTDGNGRYIFAGYKTDKAPFDEA---- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 154 ppVTTYNGDNGQRSVQVSASRTMTISDPGNVVF-GI-------PGGSPT-----ATFD-ALANL-YDLLGQNPKPANFPS 218
Cdd:PRK08027 150 --TGGYVGGTESITQQVDAARSMVIGHTGDQIFdSItsnavpePDGSASetnlfAMLDsAIAALkTPVAGSDADKETAAA 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 219 QISTIINQISNATQQLSIAQASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQV 298
Cdd:PRK08027 228 ALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKAFTDM 307


                 ....*.
gi 857338188 299 SQLSLF 304
Cdd:PRK08027 308 QGMSLF 313
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 1-186 9.32e-31

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 120.68  E-value: 9.32e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK12718   1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSvnMNASPPVTTYN 160
Cdd:PRK12718  81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYS--FDAATGKVTYN 158

                        170       180
                 ....*....|....*....|....*.
gi 857338188 161 GDNGQRSVQVSASRTMTISDPGNVVF 186
Cdd:PRK12718 159 GDLGQRGIQVDQSRLMSGGDVGSDIF 184
flgL PRK12717
flagellar hook-associated protein 3;
1-186 5.20e-27

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 110.22  E-value: 5.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK12717   1 MRISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASppvTTYN 160
Cdd:PRK12717  81 TSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSDTPPYVRNADGT---YSYQ 157

                        170       180
                 ....*....|....*....|....*.
gi 857338188 161 GDNGQRSVQVSASRTMTISDPGNVVF 186
Cdd:PRK12717 158 GDQTQLSLQVGDTLNLAANDTGYSAF 183
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-186 2.93e-19

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 87.43  E-value: 2.93e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK06663   2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMN--------- 151
Cdd:PRK06663  82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGTKIDTEPFEVIRGnikglqgda 161

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 857338188 152 ASPPVTT--YNGDNGQRSVQVSASRTMTISDPGNVVF 186
Cdd:PRK06663 162 GSNQIIGveYNGDIGEQNREIENGIYIPVNYPGNKVF 198
flgL PRK08073
flagellar hook-associated protein 3;
1-307 3.74e-14

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 71.17  E-value: 3.74e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK08073   1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDgNGNFLFSGNAVTTAPFSVNmnasppvTTYN 160
Cdd:PRK08073  81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKE-QGRYVFGGDSAEKKPFTED-------GTYQ 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRSVQVSASRTMTISDPGNVVFGIPGGSPTATFDALAN-----LYDLLGQNPKpanfpsQISTIINQISNatqqls 235
Cdd:PRK08073 153 GGTEDVNWRLNDGYEVKAFRNGEALLTPVINTLKKMVDAMQTgdqkaLQPLLEENKK------NLDIIINRTTE------ 220

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 857338188 236 iaqasVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:PRK08073 221 -----VGGTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAYINATYEATLKAVSTMSKTSILDYM 287
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 1.18e-13

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 66.98  E-value: 1.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188    3 ISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTLQN 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 857338188   83 VVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGN 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 1-163 1.07e-09

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 59.45  E-value: 1.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK08412   1 MRVTFGSKYNQMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANaTDGNGNFLFSGNAVTTAPFSVNmnasppvTTYN 160
Cdd:PRK08412  81 NEFSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLAN-TSIGGEFLFSGSKVDTKPIDSN-------GTYH 152


                 ...
gi 857338188 161 GDN 163
Cdd:PRK08412 153 GND 155
flgL PRK12717
flagellar hook-associated protein 3;
215-307 3.09e-09

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 57.83  E-value: 3.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 215 NFPSQISTIINQISNATQQLSIAQASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKT 294
Cdd:PRK12717 431 ALRAALASALGNLASAIDQVDTARSSIGARGNALDIQGTTNESLSLANTTTQSSIRDSDPAEATTRLTLQQTMLEASQLA 510

                         90
                 ....*....|...
gi 857338188 295 YAQVSQLSLFSYI 307
Cdd:PRK12717 511 FVKISQLSLFNQL 523
flgL PRK08913
flagellin;
1-307 3.47e-07

flagellin;


Pssm-ID: 236349 [Multi-domain]  Cd Length: 301  Bit Score: 50.94  E-value: 3.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK08913   3 MRVATFANSSQLIAAALRTQQTMASLQIQESSGLKSESFAGLGADAQQAVNLQVSVTRAQSYIDAATLAQSKVQVMYSAV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYAnnSSLSPTQLQQLQKTVAEGISELTGYANATDGnGNFLFSGNAVTTAP--FSVNMNASPPVTT 158
Cdd:PRK08913  83 GQIADLAQQLRSSLSAA--STGTSTDATSAAASAQQALTQLATLLNTQYG-GQYVFAGADTTTAPvdLSSFAAGADSASS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 159 -----YNGDNGQRSVQVSASRTMTISDPGNvvfgipggsPTATFDALANLYDLLGQNPKPAnfpSQISTIINQISNATQQ 233
Cdd:PRK08913 160 adtsyYQGDDTLTSVRVSATQGVSYGVTAD---------NSAFEQLMRALMLVANSSSLSS---STLSQALDLASTAVDD 227

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 857338188 234 LSIAQASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:PRK08913 228 LGDVQSRLGNAASRLTAASSRQTEYKSFAETLLSDLTGVDVAAVTAQLSTYQTQLTASYSAISKMKSLNLASYL 301
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
1-186 1.08e-06

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 49.96  E-value: 1.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDP---VAAARIELLNSSSGQNTQygkNTQAVSSWLSLSD 77
Cdd:PRK14692   1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAstyIDNTRLEYEIKTLEQVKE---STSRAQEMTQNSM 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  78 STLQNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVaEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNasppvt 157
Cdd:PRK14692  78 KALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKEL-ERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGN------ 150

                        170       180
                 ....*....|....*....|....*....
gi 857338188 158 tYNGDNGQRSVQVSASRTMTISDPGNVVF 186
Cdd:PRK14692 151 -YYGDKNNINVVTGAGTESPYNIPGWDLF 178
PRK12802 PRK12802
flagellin; Provisional
 3-301 3.60e-06

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 47.57  E-value: 3.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   3 ISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTLQN 82
Cdd:PRK12802   5 VNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGALQE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  83 VVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAvTTAPFSVNMNAsppvttyngd 162
Cdd:PRK12802  85 STNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSA-GTMTFQVGANT---------- 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 163 NGQRSVQVSASRTMTISDPGNVVFGIPGGSPTATFDalanlydllgqnpkpanfpSQISTIINQISNATQQLSIAQASVG 242
Cdd:PRK12802 154 GQSNQITFGLSASFDATGLGVGSGTLITGADSAAAE-------------------TNAQAAITAIDAALQTINTTRADLG 214

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 857338188 243 SREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQL 301
Cdd:PRK12802 215 AAQNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQL 273
PRK12806 PRK12806
flagellin; Provisional
 3-288 7.08e-06

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 47.38  E-value: 7.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   3 ISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTLQN 82
Cdd:PRK12806   5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  83 VVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGnAVTTAPFSVNMNASPPVTTYNGD 162
Cdd:PRK12806  85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDG-SFSGASFQVGANSNQTINFSIGS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 163 NGQRSVQVSASRTMT-ISDPGNVVFGIPGG-------SPTATFDALANLYDLLGQNPKPANFPSQISTIINQISNATQQL 234
Cdd:PRK12806 164 IKASSIGGIATATGTeVAGAAATDITIAIGggaatsiNSSANFTGALNGQDATSAYAKAAAINDAGIGGLSVTASTSGTQ 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 857338188 235 SIAQASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSL 288
Cdd:PRK12806 244 AVGAIGGTAGDTYNLTINGVAIYTNLDVATALTNSDLRDAINGVSNQTGVVASL 297
PRK12807 PRK12807
flagellin; Provisional
 1-282 6.00e-05

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 44.04  E-value: 6.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSALQSDLLQLNMQIDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDSTL 80
Cdd:PRK12807   1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  81 QNVVNLMGAMKSQAIYANNSSLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNASPPVTTYN 160
Cdd:PRK12807  81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIETLD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 161 GDNGQRSVQVSAsRTMTISDpgnvvFGIPGGSPTATFDAlanlydllgqnpkPANFPSQISTIINQISNATQQLSIAQAS 240
Cdd:PRK12807 161 SSATNQQITIKL-ANTTAEK-----LGIDATTSNISISG-------------AASALAAISALNTALNTVAGNRATLGAT 221

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 857338188 241 VGSREQENETLQGMSGSLdlqyNSAIGDLQNVDMAKAISNFT 282
Cdd:PRK12807 222 LNRLDRNVENLNNQATNM----ASAASQIEDADMAKEMSEMT 259
PRK12804 PRK12804
flagellin; Provisional
 1-300 1.49e-04

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 42.68  E-value: 1.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   1 MRISSNTLYQSGVNNMSAlQSDLLQLNMQ-IDTGKRVVTPADDPVAAARIELLNSSSGQNTQYGKNTQAVSSWLSLSDST 79
Cdd:PRK12804   1 MRINHNIAALNTLNRLSA-NNGASQKNMEkLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  80 LQNVVNLMGAMKSQAIYANNS-SLSPTQLQQLQKTVAEGISELTGYANATDGNGNFLFSGNAVTTAPFSVNMNasppVTT 158
Cdd:PRK12804  80 LTETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGTKS----LTF 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 159 YNGDNGQRSVQVSasrtmtISDPGNVVFGIPGGSPTATFDALANLYDLLGQNPKPANFPSQISTIINQISNATQQLSIAQ 238
Cdd:PRK12804 156 QIGANAAQQLSVN------IEAMSADALGVKDTDGTLVTGKSVSDIDVTKFANAAAAADGGFDDQLKIVDGAIKQVSDQR 229

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 857338188 239 ASVGSREQENETLQGMSGSLDLQYNSAIGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQ 300
Cdd:PRK12804 230 SKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQ 291
flgL PRK06008
flagellar hook-associated family protein;
3-307 5.41e-03

flagellar hook-associated family protein;


Pssm-ID: 235669 [Multi-domain]  Cd Length: 348  Bit Score: 38.06  E-value: 5.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188   3 ISSNTLYQSGVNNMSALQSDLLQLNMQIDTGK----------RVVTPADDPVAAARIELLNSSSGQNTQYGKNTQ-AVSS 71
Cdd:PRK06008   6 ISTLALQNALRLTIAKLQAELSKAQTEATTGRyadvglslgsKTARSVSLRREYDRLASLTDSNSLVTQRLTATQtALGQ 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188  72 WLSLSDSTLQNVVNlmgamksqaiyANNSSLSPTQLQQlqkTVAEGISELTGYANATDgNGNFLFSGNAVTTAPFSVNMN 151
Cdd:PRK06008  86 IIEAAQSFLNDLLA-----------ANSSAQTAATVAQ---SARSALSSLTSTLNTSV-NGEYLFAGINTDVKPLTDYGA 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 152 ASPPV--------TTYNGDNgQRSVQVSA-------------------------------SRTMT--ISDPGNVVFGIPG 190
Cdd:PRK06008 151 PGSAAktavdtafQTYFGFA-PGDPAVSNitaaqmqdfldgtfaplfsdanwsanwssasDTNMTsrISPTETAETSTSA 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857338188 191 GSPTATFDALAN--LYDLLGQNPKPANFPSQISTIINQISNATQQLSIAQASVGSREQEnetLQGMSGSLDLQ---YNSA 265
Cdd:PRK06008 230 NAEGFRKLAMAYvmVSELGDIGLSSEAQDTVTDKAITYTGQAISGLTTEQSQLGLAQSR---VTKANTRLDAQiklLNGQ 306

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 857338188 266 IGDLQNVDMAKAISNFTLTQTSLQYTQKTYAQVSQLSLFSYI 307
Cdd:PRK06008 307 ILDLEGVDPYEASTRVNALQTQLETSYSLTSQLQQLSLVNYL 348
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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