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Conserved domains on  [gi|748127630|gb|KIH32835|]
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flagellin [Escherichia coli]

Protein Classification

lateral flagellin LafA( domain architecture ID 14341555)

lateral flagellin LafA in a rare type of flagellin, which is the subunit protein that polymerizes to form the flagella

Gene Ontology:  GO:0009288

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
lat_flg_LafA_1 NF033376
lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some ...
 1-304 8.62e-128

lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.


:

Pssm-ID: 380229 [Multi-domain]  Cd Length: 304  Bit Score: 366.54  E-value: 8.62e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 80
Cdd:NF033376   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGDRINSSADDAAGKQIANRLTAQSSGMDVALSNINDATAMLQTADSM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160
Cdd:NF033376  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 161 AEFSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASIN 240
Cdd:NF033376 161 AESSDTMTVNISSQLNQLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMINSISTAMDDVSQIQSKLGASIN 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748127630 241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:NF033376 241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
 
Name Accession Description Interval E-value
lat_flg_LafA_1 NF033376
lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some ...
 1-304 8.62e-128

lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.


Pssm-ID: 380229 [Multi-domain]  Cd Length: 304  Bit Score: 366.54  E-value: 8.62e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 80
Cdd:NF033376   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGDRINSSADDAAGKQIANRLTAQSSGMDVALSNINDATAMLQTADSM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160
Cdd:NF033376  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 161 AEFSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASIN 240
Cdd:NF033376 161 AESSDTMTVNISSQLNQLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMINSISTAMDDVSQIQSKLGASIN 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748127630 241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:NF033376 241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
2-304 1.13e-63

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 202.38  E-value: 1.13e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   2 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 81
Cdd:NF038071   3 LSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEGAM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  82 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntGTDGLFQSAVTFQVGA 161
Cdd:NF038071  83 DEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLL--------KDGGKFEAAVTFQIGG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 162 EFSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvsggteltasgsANQMITSISTAMDDVSQIQSKLGASINR 241
Cdd:NF038071 155 SSAEKLDVDASANVQKVNAEVVGTEKDVTAGIGTQAKA--------------ASAAITKLDTLLGDIGAVRSQFGANINR 220

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 748127630 242 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:NF038071 221 LEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK08869 PRK08869
polar flagellin E;
1-304 1.02e-45

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 158.55  E-value: 1.02e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 80
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLF----------------------- 137
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLngsfgtksfqigansgeavsldl 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 138 -----------GVSGTSNTGTDGLFQ-----SAVTFQVGAEFSDTMTVNI------------------SSQLNTLVTDLS 183
Cdd:PRK08869 161 ksmrsdakimgGVSYDAEGGADKDWTvgagnTDLNVSFDDKGGETQAITInakagddieelatyingqTDGVGASVSEDG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 184 AISNSFSADQADTTGTAGVSGGTELTAS---------------GSANQMITSISTAMDDVSQIQSKLGASINRLNDTANN 248
Cdd:PRK08869 241 KLQLFAAGQKVSGGVSFSGGLAAELGLGnatavtvddldistvGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 748127630 249 LTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:PRK08869 321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
2-291 2.19e-42

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 146.16  E-value: 2.19e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   2 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 81
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  82 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTgtdglfqsavTFQVga 161
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTP----------PFQV-- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 162 efsdtmtvnissqlntlvtdlsaisnsfsadqadttgtagvsggTELTASGSANQMITSISTAMDDVSQIQSKLGASINR 241
Cdd:COG1344  149 --------------------------------------------DYQGDAGQRTAALGALDAALDNVSSARAELGARQNR 184

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 748127630 242 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 291
Cdd:COG1344  185 LESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQ 234
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-142 1.69e-23

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 93.56  E-value: 1.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630    4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 748127630   84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGT 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-283 2.96e-20

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 88.56  E-value: 2.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630    4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGTSNT---------------GTD 148
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIF--SGTKTDtppfsedeggevtynGDG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  149 GLFQSAVTFQVGAEFSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvSGGTELTASgsaNQMITSISTAMDDV 228
Cdd:TIGR02550 160 GQRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDAL---SSGDAKAAL---SASLNDLDKALDNV 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 748127630  229 SQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 283
Cdd:TIGR02550 234 LSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQ 288
 
Name Accession Description Interval E-value
lat_flg_LafA_1 NF033376
lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some ...
 1-304 8.62e-128

lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.


Pssm-ID: 380229 [Multi-domain]  Cd Length: 304  Bit Score: 366.54  E-value: 8.62e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 80
Cdd:NF033376   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGDRINSSADDAAGKQIANRLTAQSSGMDVALSNINDATAMLQTADSM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160
Cdd:NF033376  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 161 AEFSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASIN 240
Cdd:NF033376 161 AESSDTMTVNISSQLNQLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMINSISTAMDDVSQIQSKLGASIN 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748127630 241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:NF033376 241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
2-304 1.13e-63

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 202.38  E-value: 1.13e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   2 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 81
Cdd:NF038071   3 LSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEGAM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  82 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntGTDGLFQSAVTFQVGA 161
Cdd:NF038071  83 DEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLL--------KDGGKFEAAVTFQIGG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 162 EFSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvsggteltasgsANQMITSISTAMDDVSQIQSKLGASINR 241
Cdd:NF038071 155 SSAEKLDVDASANVQKVNAEVVGTEKDVTAGIGTQAKA--------------ASAAITKLDTLLGDIGAVRSQFGANINR 220

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 748127630 242 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:NF038071 221 LEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK08869 PRK08869
polar flagellin E;
1-304 1.02e-45

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 158.55  E-value: 1.02e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 80
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLF----------------------- 137
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLngsfgtksfqigansgeavsldl 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 138 -----------GVSGTSNTGTDGLFQ-----SAVTFQVGAEFSDTMTVNI------------------SSQLNTLVTDLS 183
Cdd:PRK08869 161 ksmrsdakimgGVSYDAEGGADKDWTvgagnTDLNVSFDDKGGETQAITInakagddieelatyingqTDGVGASVSEDG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 184 AISNSFSADQADTTGTAGVSGGTELTAS---------------GSANQMITSISTAMDDVSQIQSKLGASINRLNDTANN 248
Cdd:PRK08869 241 KLQLFAAGQKVSGGVSFSGGLAAELGLGnatavtvddldistvGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 748127630 249 LTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:PRK08869 321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
2-291 2.19e-42

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 146.16  E-value: 2.19e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   2 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 81
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  82 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTgtdglfqsavTFQVga 161
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTP----------PFQV-- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 162 efsdtmtvnissqlntlvtdlsaisnsfsadqadttgtagvsggTELTASGSANQMITSISTAMDDVSQIQSKLGASINR 241
Cdd:COG1344  149 --------------------------------------------DYQGDAGQRTAALGALDAALDNVSSARAELGARQNR 184

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 748127630 242 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 291
Cdd:COG1344  185 LESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQ 234
PRK12802 PRK12802
flagellin; Provisional
 1-304 9.80e-37

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 132.69  E-value: 9.80e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 80
Cdd:PRK12802   2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGtsntgtdglfqSAVTFQVG 160
Cdd:PRK12802  82 LQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSA-----------GTMTFQVG 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 161 AEFSDTMTVNISsqlntlvtdlsaISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASIN 240
Cdd:PRK12802 151 ANTGQSNQITFG------------LSASFDATGLGVGSGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQN 218

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748127630 241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:PRK12802 219 RLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK12807 PRK12807
flagellin; Provisional
 2-304 2.55e-36

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 131.48  E-value: 2.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   2 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 81
Cdd:PRK12807   1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  82 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVGA 161
Cdd:PRK12807  81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIETLD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 162 EFSDTMTVNIssQLNTLvtdlsaisnsfsadQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASINR 241
Cdd:PRK12807 161 SSATNQQITI--KLANT--------------TAEKLGIDATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNR 224

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 748127630 242 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:PRK12807 225 LDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
PRK12804 PRK12804
flagellin; Provisional
 2-304 2.99e-34

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 126.65  E-value: 2.99e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   2 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 81
Cdd:PRK12804   1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  82 DEMSDVLGRMKDLSTQAAN-GTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLfgVSGTSNTGTDGLFQSAVTFQVG 160
Cdd:PRK12804  81 TETHSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKL--LDGTFKPAAPAAGTKSLTFQIG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 161 AEFSDTMTVNI----SSQLNTLVTDLSAISNSFSADqADTTGTAGVSGgtelTASGSANQMITSISTAMDDVSQIQSKLG 236
Cdd:PRK12804 159 ANAAQQLSVNIeamsADALGVKDTDGTLVTGKSVSD-IDVTKFANAAA----AADGGFDDQLKIVDGAIKQVSDQRSKLG 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 748127630 237 ASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:PRK12804 234 AVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK06819 PRK06819
FliC/FljB family flagellin;
4-291 9.36e-29

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 113.33  E-value: 9.36e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK06819   5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDE----YDEL-----------------------------GQQMSDMLQ--N 128
Cdd:PRK06819  85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEisqrLAEIdrvsdqtqfngvkvlaedttmsiqvgandGETIDINLQkiD 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 129 TTYGGTNLFGVSGTSNTGTD--------GLFQSAVTFQVGAEFSDTMTVNISSQLNTL--------------VTDLSAIS 186
Cdd:PRK06819 165 SKSLGLGSFSVSGVSGALTSltftdtalDTSVTGVTTTTALDFSDISTFAKGATVHGIgdvgtdgayadgyvIRTTDGKQ 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 187 NSFSADQAD--------------TTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLTSM 252
Cdd:PRK06819 245 YKGEVDATNgkvtfaddangdpiTDATKLEAAAQFSPAGKATASPLETLDDALKQVDGLRSSLGAVQNRFESTVTNLNNT 324

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 748127630 253 QDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 291
Cdd:PRK06819 325 VTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQ 363
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-142 1.69e-23

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 93.56  E-value: 1.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630    4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 748127630   84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGT 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
PRK12805 PRK12805
FliC/FljB family flagellin;
2-303 2.92e-22

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 94.17  E-value: 2.92e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   2 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 81
Cdd:PRK12805   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  82 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTgtdglfqSAVTFQVGA 161
Cdd:PRK12805  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAA-------TQVSIQASD 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 162 EFSDTMTVNISSqlntlvtdlsaiSNSFSADQADTTGTAGVSGGTELTA--SGSANQMITSISTAMDDVSQIQSKLGASI 239
Cdd:PRK12805 154 KANDLINIDLFN------------AKGLSAGTITLGSGSTVAGYSALSVadADSSQEATEAIDELINNISNGRALLGAGM 221

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748127630 240 NRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLL 303
Cdd:PRK12805 222 SRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-283 2.96e-20

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 88.56  E-value: 2.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630    4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGTSNT---------------GTD 148
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIF--SGTKTDtppfsedeggevtynGDG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  149 GLFQSAVTFQVGAEFSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvSGGTELTASgsaNQMITSISTAMDDV 228
Cdd:TIGR02550 160 GQRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDAL---SSGDAKAAL---SASLNDLDKALDNV 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 748127630  229 SQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 283
Cdd:TIGR02550 234 LSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQ 288
PRK12808 PRK12808
flagellin; Provisional
 4-136 3.06e-20

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 90.40  E-value: 3.06e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK12808   3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNL 136
Cdd:PRK12808  83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNL 135
PRK12803 PRK12803
flagellin; Provisional
 4-304 1.60e-18

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 84.48  E-value: 1.60e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK12803   3 INHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFG-------VSGTSNTGTDGLFQSAVT 156
Cdd:PRK12803  83 VEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSnksaaqnVRTAEELGMQPAKINTPA 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 157 FQVGAEFSDTMTVNI-SSQLNTLVTDLSA--ISNSFSADQADTTGTA----------------------GVSGGTELTAS 211
Cdd:PRK12803 163 SLSGSQASWTLRVHVgANQDEAIAVNIYAanVANLFSGEGAQQAAPVqegaqqegaqaapapaaapaqgGVNSPVNVTTT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 212 GSANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 291
Cdd:PRK12803 243 VDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQ 322

                        330
                 ....*....|...
gi 748127630 292 SNSMSSMVSSLLQ 304
Cdd:PRK12803 323 ANQVPQYVLSLLR 335
PRK12806 PRK12806
flagellin; Provisional
 4-215 7.01e-18

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 83.59  E-value: 7.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK12806   5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntgtDGLFQSAVtFQVGAEF 163
Cdd:PRK12806  85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRIL----------DGSFSGAS-FQVGANS 153

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 748127630 164 SDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSAN 215
Cdd:PRK12806 154 NQTINFSIGSIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSINSSAN 205
PRK08026 PRK08026
FliC/FljB family flagellin;
4-270 5.49e-17

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 80.94  E-value: 5.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK08026   5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTsntgtdglfqsaVTFQVGAEF 163
Cdd:PRK08026  85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGS------------MKIQVGAND 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 164 SDTMTVN---ISSQ---LNTL-------VTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANqmitsISTAMDDVSQ 230
Cdd:PRK08026 153 GETITIDlkkIDSDtlgLDGFnvngkgtVANTAATVSDLTAAGATLDTTGLYDVKTKNAALTTAD-----ALAKLGDGDK 227

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 748127630 231 IQSKLGASINRLNDTANN--LTSMQDNTEVAIGNIMDTDYAT 270
Cdd:PRK08026 228 VTATATGGDYTYNAKSGKyqAADLAATLTPDVGGTAGASYTI 269
PRK12584 PRK12584
flagellin A; Reviewed
 4-173 3.82e-16

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 78.41  E-value: 3.82e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK12584   5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNtgtdglfqsavTFQVGAEF 163
Cdd:PRK12584  85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNK-----------EFQVGAYS 153

                        170
                 ....*....|
gi 748127630 164 SDTMTVNISS 173
Cdd:PRK12584 154 NQSIKASIGS 163
PRK08411 PRK08411
flagellin; Reviewed
 4-171 1.23e-15

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 76.95  E-value: 1.23e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK08411   5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNtgtdglfqsavTFQVGAEF 163
Cdd:PRK08411  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQ-----------EFQIGASS 153


                 ....*...
gi 748127630 164 SDTMTVNI 171
Cdd:PRK08411 154 NQTVKATI 161
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 28-269 3.84e-15

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 74.26  E-value: 3.84e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  28 MERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDD 107
Cdd:PRK07701  27 QEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQATDILQRARELAVQAANGTNTQTD 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 108 LQAMQDEYDELGQQMSDmLQNTTYGGTNLFG--------VSGTSNTGTDGLFQSAVTFQVGAefSDTMTVNI-------- 171
Cdd:PRK07701 107 RQAIAQEIEQLKEQLIQ-IANTQYNGRYIFNgtktdtppVTDDGDNIENSTDSGDIEFEIAK--GNTINVNVpgdkafgg 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 172 -SSQLNTLVTDLSAISNSFsaDQADTTGtagvsggteltasgsANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLT 250
Cdd:PRK07701 184 qSGGGSNLFEMLDNLENAL--DSGDTQG---------------VSNLLSDIDQHIDNVLAVRAELGARSNRLELIENRLS 246

                        250
                 ....*....|....*....
gi 748127630 251 SMQDNTEVAIGNIMDTDYA 269
Cdd:PRK07701 247 DQEVNATKLLSDNEDVDLA 265
PRK13588 PRK13588
flagellin B; Provisional
 4-209 5.78e-15

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 74.90  E-value: 5.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK13588   5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntgtDGLFqSAVTFQVGAEF 163
Cdd:PRK13588  85 QIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQML----------SGSF-SNKEFQIGAYS 153

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 748127630 164 SDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELT 209
Cdd:PRK13588 154 NTTVKASIGATSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLN 199
PRK13589 PRK13589
flagellin A;
4-173 2.84e-13

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 70.06  E-value: 2.84e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK13589   5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNtgtdglfqsavTFQVGAEF 163
Cdd:PRK13589  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQ-----------EFQIGASS 153

                        170
                 ....*....|
gi 748127630 164 SDTMTVNISS 173
Cdd:PRK13589 154 NQTIKATIGA 163
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 218-303 1.97e-12

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 61.96  E-value: 1.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  218 ITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSS 297
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 748127630  298 MVSSLL 303
Cdd:pfam00700  81 SLLNLL 86
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 4-284 5.36e-11

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 62.34  E-value: 5.36e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   4 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 83
Cdd:PRK07192   3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHLSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  84 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGT-SNTGTDGLFQSAVTF----- 157
Cdd:PRK07192  83 VNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLF--SGTaSNTQPITFDAAGGTYtyngn 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 158 ----QVGAEFSDTMTVNISSQ----------LNTLVTDLSAISNSfSADQADTTGTAGVSggteltasgsanQMITSIST 223
Cdd:PRK07192 161 sdqrQVQVGEGVQMPVNVTGQsvfqgggldvFNTLDKLIDLLETP-ALPAADAALTAAVD------------EALGAIDD 227

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 748127630 224 AMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQT 284
Cdd:PRK07192 228 ALDNVLTVRTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEA 288
PRK06663 PRK06663
flagellar hook-associated protein 3;
29-143 1.31e-10

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 61.63  E-value: 1.31e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  29 ERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDL 108
Cdd:PRK06663  29 NQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQSITNILQRARELAVQGANGTYQADDK 108

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 748127630 109 QAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGTS 143
Cdd:PRK06663 109 KKIAKEIDELLEDLVDIANARGADGYSIF--SGTK 141
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 14-283 6.40e-10

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 59.54  E-value: 6.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  14 VNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKD 93
Cdd:PRK08870  13 VNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARE 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  94 LSTQAANGTYSDDDLQAMQDEYDELGQQMSDmLQNTT-------YGGT-------------------------------- 134
Cdd:PRK08870  93 LVVQAGNGSLSDSDRQAIATELQGLRDQLLN-LANSKdgsgnylFAGTqsgtqpfafdasgnvvysgdqgqrqvqvadsv 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 135 ----------------NLFGV----SGTSNTGTdGLFQSAV-----TFQVGAEFSDTMTVNISSQLNTLVTDLSAisNSF 189
Cdd:PRK08870 172 qvatndpgdevfmsvpNGGGDyvpnANASNTGT-GLLGSASitdpsDPVNGDTYTITFTDNGAGGTNTYVTDSST--GTV 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 190 SADQADTTGTAGVSGGTELTASGSA--------------------------------------------NQMITSISTAM 225
Cdd:PRK08870 249 VTAQAYDAGQPINFNGVEVQISGAPaagdsftltpapqasifdtlddaiaalespvstpaadaalqnalAQALRNLDNAL 328

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 748127630 226 DDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 283
Cdd:PRK08870 329 NNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQ 386
PRK12687 PRK12687
flagellin; Reviewed
 1-289 1.42e-08

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 55.06  E-value: 1.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630   1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSgmgvALSNINDATAM-LQTADS 79
Cdd:PRK12687   1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNE----ALSAVSDALGLgAATVDT 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  80 MFDEMSDVLGRMKD----LSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGV--SGTSNTGTDGLFqS 153
Cdd:PRK12687  77 MYTALTSVVGDSKSgltaLKAKLVAAREPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVdsSPSSYNATKSVV-S 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 154 AVTFQVGAEFSDTMTVNISSqlnTLVTDLSAISNSFSADQADTTGTAGVSGGT----ELTASGS----ANQMITSISTAM 225
Cdd:PRK12687 156 SFTRVGGTVAIKTIDVNIAK---LALYDTNGSSTTGILDKTVTVGTATASVSSidihLLTDSATdltkLDGYIGIVDQAL 232

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748127630 226 DDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITML 289
Cdd:PRK12687 233 GSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQAL 296
PRK08026 PRK08026
FliC/FljB family flagellin;
96-291 6.77e-06

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 47.43  E-value: 6.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  96 TQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGT--NLFGVSGTSNTGTDGLFQS-AVTFQVGAEF----SDTMT 168
Cdd:PRK08026 300 TTNNAGAATKATLDALKKTASEGAATAKAALAAAGVTVAdgVTAKTVKMSYTDKNGKVIDgGYAVKTGDDYyaadYDEIT 379

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 169 VNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQM-------------ITSISTAMDDVSQIQSKL 235
Cdd:PRK08026 380 GAISATTTYYTAKDGTTKTAANKLGGADGKTEVVTIDGKTYVASDGKQTtlaeaaatttenpLAALDAAIASIDKFRSSL 459

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 748127630 236 GASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 291
Cdd:PRK08026 460 GAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAK 515
PRK13589 PRK13589
flagellin A;
141-304 1.05e-05

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 46.94  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 141 GTSNTGTDGLFQSAVTFQVGAEFSDTMTVNISSQLNTlVTDLSAISNSFSADQADTTGTAGVsggtelTASGSANQMITS 220
Cdd:PRK13589 420 GSGKNYSVGLSQGIQIISSASAMSTVYNVSAGSGFSS-GSGLSQFATMKTTAAGVKDETAGV------TTLKGAMAVMDI 492

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 221 ISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVS 300
Cdd:PRK13589 493 AETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVL 572


                 ....
gi 748127630 301 SLLQ 304
Cdd:PRK13589 573 KLLQ 576
flgL PRK12717
flagellar hook-associated protein 3;
29-173 1.49e-05

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 46.27  E-value: 1.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  29 ERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDL 108
Cdd:PRK12717  28 EQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSAGNGGLTDADR 107

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748127630 109 QAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNT----GTDGLF-----QSAVTFQVGaefsDTMTVNISS 173
Cdd:PRK12717 108 KAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSDTPpyvrNADGTYsyqgdQTQLSLQVG----DTLNLAAND 177
PRK12584 PRK12584
flagellin A; Reviewed
 173-304 1.98e-05

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 45.67  E-value: 1.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 173 SQLNTLVTDLSAISNSFSADQADTTG--------TAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASINRLND 244
Cdd:PRK12584 371 SQVAETTVNLRDVTGNFNANVKSASGanynaviaSGNQSLGSGVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMIS 450

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 245 TANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:PRK12584 451 TVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLLT 510
PRK08411 PRK08411
flagellin; Reviewed
 138-304 2.05e-05

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 45.75  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 138 GVSGTSNTGTDGLFQSAVTFQVGAEFSDTMTVNISSQLNTlVTDLSAISNSFSADQADTTGTAGVsggtelTASGSANQM 217
Cdd:PRK08411 413 GYSVGSGKNYSVGLSSGIQISSASAMSTVYVVSAGSGFSS-GSNLSQFAAMKTTAANVKDETAGV------TTLKGAMAV 485

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 218 ITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSS 297
Cdd:PRK08411 486 MDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQ 565


                 ....*..
gi 748127630 298 MVSSLLQ 304
Cdd:PRK08411 566 NVLRLLQ 572
PRK13588 PRK13588
flagellin B; Provisional
 193-304 1.24e-04

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 43.32  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 193 QADTTGTAGVSGGTELTASGSANQMITSISTAMDdvsQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEA 272
Cdd:PRK13588 406 QAETNSQGIGAGVTSLKGAMIVMDMAESARTQLD---KIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEES 482

                         90       100       110
                 ....*....|....*....|....*....|..
gi 748127630 273 SNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
Cdd:PRK13588 483 ANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514
flgL PRK08913
flagellin;
65-283 1.61e-03

flagellin;


Pssm-ID: 236349 [Multi-domain]  Cd Length: 301  Bit Score: 39.38  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  65 SNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDlqAMQDEYDELGQQMSDMLqNTTYGGTNLFGVSGTSN 144
Cdd:PRK08913  66 DAATLAQSKVQVMYSAVGQIADLAQQLRSSLSAASTGTSTDAT--SAAASAQQALTQLATLL-NTQYGGQYVFAGADTTT 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 145 TGTDglFQSAVTFQVGAEFSDTMTVNISSQLNTL-VTDLSAISNSFSADQA---DTTGTAGVSGGTELTASGSANQMITS 220
Cdd:PRK08913 143 APVD--LSSFAAGADSASSADTSYYQGDDTLTSVrVSATQGVSYGVTADNSafeQLMRALMLVANSSSLSSSTLSQALDL 220

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 748127630 221 ISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 283
Cdd:PRK08913 221 ASTAVDDLGDVQSRLGNAASRLTAASSRQTEYKSFAETLLSDLTGVDVAAVTAQLSTYQTQLT 283
flgL PRK08073
flagellar hook-associated protein 3;
54-289 1.66e-03

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 39.58  E-value: 1.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630  54 TAQSSGMGVALSNIN-------DATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSdML 126
Cdd:PRK08073  46 ASKSFAIQHSLANIEqmqkdvaDSKNVLNQTENTLSGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVV-YL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 127 QNTTYGGTNLFGVSGTSNT--GTDGLFQSA---VTFQVGAEFSDTMTVNISSQLNTLVTDLSAISNSFSadQADTTGTAG 201
Cdd:PRK08073 125 ANTKEQGRYVFGGDSAEKKpfTEDGTYQGGtedVNWRLNDGYEVKAFRNGEALLTPVINTLKKMVDAMQ--TGDQKALQP 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748127630 202 VSGGTELTASGSANQMiTSISTAMDDVSQIQSKLGASINRLNDTANNLTSMqdNTEVAIGNIMDTDYATEAsnmTKQQVL 281
Cdd:PRK08073 203 LLEENKKNLDIIINRT-TEVGGTMNTVETFKTILSEQNLALQENRKEIEDV--DLAVAISDLAYINATYEA---TLKAVS 276


                 ....*...
gi 748127630 282 MQTGITML 289
Cdd:PRK08073 277 TMSKTSIL 284
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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