NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|700200206|gb|KGN55364|]
View 

hypothetical protein Csa_012951 [Cucumis sativus]

Protein Classification

RWP-RK domain-containing protein( domain architecture ID 10488929)

RWP-RK domain-containing protein may function as a transcription factor in plants and algae, and may be involved in a variety of cellular processes, including cell differentiation, development, and stress response; similar to Arabidopsis thaliana protein RKD1-5

Gene Ontology:  GO:0006355|GO:0003700|GO:0003677
PubMed:  24987011

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RWP-RK pfam02042
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the ...
 92-139 1.02e-20

RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development.


:

Pssm-ID: 460427  Cd Length: 49  Bit Score: 80.24  E-value: 1.02e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 700200206   92 RMTVNDLKEYLHLPISEAAKKMNLCLTVVKKICRRSGLRRWPYRKVKS 139
Cdd:pfam02042   1 SITLEDLSQYFHLPIKEAAKELGVSLTTLKRICRRLGIPRWPHRKLKS 48
 
Name Accession Description Interval E-value
RWP-RK pfam02042
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the ...
 92-139 1.02e-20

RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development.


Pssm-ID: 460427  Cd Length: 49  Bit Score: 80.24  E-value: 1.02e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 700200206   92 RMTVNDLKEYLHLPISEAAKKMNLCLTVVKKICRRSGLRRWPYRKVKS 139
Cdd:pfam02042   1 SITLEDLSQYFHLPIKEAAKELGVSLTTLKRICRRLGIPRWPHRKLKS 48
 
Name Accession Description Interval E-value
RWP-RK pfam02042
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the ...
 92-139 1.02e-20

RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development.


Pssm-ID: 460427  Cd Length: 49  Bit Score: 80.24  E-value: 1.02e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 700200206   92 RMTVNDLKEYLHLPISEAAKKMNLCLTVVKKICRRSGLRRWPYRKVKS 139
Cdd:pfam02042   1 SITLEDLSQYFHLPIKEAAKELGVSLTTLKRICRRLGIPRWPHRKLKS 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH