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Conserved domains on  [gi|624384414|gb|KBT43296|]
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sugar-transport ABC transporter integral membrane protein SugA [Mycobacterium tuberculosis 2233BH]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
8-296 1.72e-74

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 230.41  E-value: 1.72e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414   8 TATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPnDTAFIGLGNYHTILIDRYWWTALAV 87
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGP-PPEFVGLDNYARLFTDPRFWNALGN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  88 TLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPY----DSAPLTQ 163
Cdd:COG1175   81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGAlglePINWLGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 164 QIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNI 243
Cdd:COG1175  161 PSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLV 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 624384414 244 YVLTGG--SNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFG 296
Cdd:COG1175  241 YVLTGGgpGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
8-296 1.72e-74

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 230.41  E-value: 1.72e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414   8 TATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPnDTAFIGLGNYHTILIDRYWWTALAV 87
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGP-PPEFVGLDNYARLFTDPRFWNALGN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  88 TLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPY----DSAPLTQ 163
Cdd:COG1175   81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGAlglePINWLGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 164 QIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNI 243
Cdd:COG1175  161 PSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLV 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 624384414 244 YVLTGG--SNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFG 296
Cdd:COG1175  241 YVLTGGgpGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
28-290 8.58e-20

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 87.19  E-value: 8.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  28 MLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTaFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALA 107
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQ-FVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 108 LVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPGTG---YLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMS 184
Cdd:PRK10561  80 ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGlitHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNF 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 185 LLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPA----IVVALLFRTLDAFRIFDNIyvlTGGSNNTGSVSILG 260
Cdd:PRK10561 160 LFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVsfflLVVNLVYAFFDTFPVIDAA---TSGGPVQATTTLIY 236

                        250       260       270
                 ....*....|....*....|....*....|..
gi 624384414 261 --YDNLFKGFNVGLGSAISVLIFGCVAVIAFI 290
Cdd:PRK10561 237 kiYREGFTGLDLSSSAAQSVVLMFLVIVLTVV 268
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 85-284 2.52e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 2.52e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  85 LAVTLAITAVSVTIEFVLGLALALVM-HRTLIGKGLVRTAVLIPYGIVTVVASYSWYYawtpgtgylanLLPYDSAPLTQ 163
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILaRKRGKLDRLLRRIIDLLLSLPSLVLGLLLVL-----------LFGVLLGWGIL 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 164 QIPSLGIVVIAEVWkTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNI 243
Cdd:cd06261   70 PGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALV 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 624384414 244 YVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCV 284
Cdd:cd06261  149 SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 76-237 2.44e-06

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 47.78  E-value: 2.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414   76 LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHR-TLIGKGLVRTAVLIPYGIVTVVASYSWYYAWtpgtGYLANLL 154
Cdd:TIGR01581  14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARvRFPLKKLLDTLLDLPMVLPPLVAGLALLLLF----GRNGLLG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  155 PYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLF--- 231
Cdd:TIGR01581  90 PYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLawa 169


                  ....*.
gi 624384414  232 RTLDAF 237
Cdd:TIGR01581 170 RALGEF 175
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 171-295 1.69e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.52  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  171 VVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLtGGS 250
Cdd:pfam00528  55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSW 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 624384414  251 NNTGSVSILGYDNLFKGFNVGLGSAIsVLIFGCVAVIAFIFIKLF 295
Cdd:pfam00528 134 PGLGLLLIEAILGYDYPEIQGPVLAA-ALILLLLNLLVDILQRLL 177
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
8-296 1.72e-74

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 230.41  E-value: 1.72e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414   8 TATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPnDTAFIGLGNYHTILIDRYWWTALAV 87
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGP-PPEFVGLDNYARLFTDPRFWNALGN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  88 TLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPGTGYLANLLPY----DSAPLTQ 163
Cdd:COG1175   81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGAlglePINWLGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 164 QIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNI 243
Cdd:COG1175  161 PSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLV 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 624384414 244 YVLTGG--SNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFG 296
Cdd:COG1175  241 YVLTGGgpGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 18-303 8.16e-27

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 106.38  E-value: 8.16e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  18 SRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFiGLGNYHTILIDRYWWTALAVTLAITAVSVT 97
Cdd:COG1176    3 AALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGF-TLENYARLFTDPLYLKVLLRTLWIALLTTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  98 IEFVLGLALALVMHRT-LIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPgTGYLANLLPY---DSAPLtQQIPSLGIVVI 173
Cdd:COG1176   82 ICLLLGYPIAYFLARApPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGR-NGLLNSLLLAlglIDEPL-RLLYTEFAVVI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 174 AEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNT 253
Cdd:COG1176  160 GLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLM 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 624384414 254 gsVSILGYDNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFGAAAPGGE 303
Cdd:COG1176  240 --IGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
23-290 3.81e-24

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 102.16  E-value: 3.81e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  23 RRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQrnnlatpndtafIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVL 102
Cdd:COG1178    6 RRRPRLLLLLLALLLALLVLLPLLALLLRAFT------------DGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 103 GLALALVMHRT-LIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPgTGYLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTP 181
Cdd:COG1178   74 GVPLAWLLARTdFPGRRLLRWLLLLPLALPPYVVALAWIALFGP-NGLLNTLLRALFGLEPPDIYGLGGIILVLVLFNYP 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 182 FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLtGGSNNTGSVSIlgY 261
Cdd:COG1178  153 YVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL-GGGYTTLTTAI--Y 229

                        250       260
                 ....*....|....*....|....*....
gi 624384414 262 DNLFKGFNVGLGSAISVLIFGCVAVIAFI 290
Cdd:COG1178  230 QAWLGDFDLGAAAALALVLLLLVLLLLLL 258
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
28-290 8.58e-20

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 87.19  E-value: 8.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  28 MLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTaFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALA 107
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQ-FVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 108 LVMHRTLIGKGLVRTAVLIPYGIVTVVASYSWYYAWTPGTG---YLANLLPYDSAPLTQQIPSLGIVVIAEVWKTTPFMS 184
Cdd:PRK10561  80 ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGlitHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNF 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 185 LLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPA----IVVALLFRTLDAFRIFDNIyvlTGGSNNTGSVSILG 260
Cdd:PRK10561 160 LFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVsfflLVVNLVYAFFDTFPVIDAA---TSGGPVQATTTLIY 236

                        250       260       270
                 ....*....|....*....|....*....|..
gi 624384414 261 --YDNLFKGFNVGLGSAISVLIFGCVAVIAFI 290
Cdd:PRK10561 237 kiYREGFTGLDLSSSAAQSVVLMFLVIVLTVV 268
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 66-292 1.23e-19

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 87.07  E-value: 1.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  66 FIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMH--RTLIGKGLVRTAVLIPYGIVTVVASYSWYYAW 143
Cdd:COG4209   69 WVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNelRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFL 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 144 TPGTGYLANLLP---YDSAP-LTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILP 219
Cdd:COG4209  149 SPDTGLVNQLLRalgGEPINfLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLP 228

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 624384414 220 MIKPAIVVALLFRTLDAFRI-FDNIYVLTGGSN-NTGSV-SILGYDNLFKGFNVGLGSAISVLIfgcvAVIAFIFI 292
Cdd:COG4209  229 GIRPTIVILLILNIGNILNVgFEQIYLLYNPLNySTSDViDTYVYRIGLQNGDYSYATAVGLFK----SVVGLILV 300
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 23-299 2.37e-18

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 82.85  E-value: 2.37e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  23 RRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFiGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVL 102
Cdd:COG1177    2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGF-TLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 103 GLALALVMHRT-LIGKGLVRTAVLIPY---GIVTVVASYSWYYAWtpgtgylanllpydsapltQQIPSLGIVVIAEVWK 178
Cdd:COG1177   81 GTPAALALARYrFRGRRLLLALLLLPLvvpGIVLGVALLLLFSAL-------------------GLSGGLWGLILAHVVF 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 179 TTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFrtldAFRI-FDNI---YVLTGGSNNTG 254
Cdd:COG1177  142 TLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALL----AFTLsFDEFvitLFLAGPGVTTL 217

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 624384414 255 SVSIlgYDNLFKGFNvGLGSAISVLIFGCVAVIAFIFIKLFGAAA 299
Cdd:COG1177  218 PVYI--YSMIRRGIS-PEINALSTLLILLSLLLLLLAERLRRRGE 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
23-296 1.86e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 73.27  E-value: 1.86e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  23 RRLAFMLVAPAAMLMVAVtayPIGYALWLSLqrnnlaTPNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVL 102
Cdd:COG1178  287 RWLALALCLLLVLLGLLL---PLLALLLWSL------TKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLL 357

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 103 GLALALVMHRT-LIGKGLVRTAVLIPYGIVTVVAsyswyyawtpGTGYLANLLPYDSAPLTQqipSLGIVVIAEVWKTTP 181
Cdd:COG1178  358 ALLLAYLVRRRrGRLARLLDRLAMLPYAVPGIVL----------GLGLLLLFNRPLPLLLYG---TLAILVLAYVVRFLP 424

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 182 FMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLTGGSNNTGSVSILgy 261
Cdd:COG1178  425 FALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIY-- 502

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 624384414 262 dNLFKGFNVGLGSAISVLIFGCVAVIAFIFIKLFG 296
Cdd:COG1178  503 -QLASSGRYGEAAALALLLVLVSLLPVLLLERLLG 536
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 33-231 1.95e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 60.49  E-value: 1.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  33 AAMLMVAVTAYPIGYALWLSLQRNNLATPNDTAFI----GLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALAL 108
Cdd:COG0395   20 LLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLpsefTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAY 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 109 VMHR-TLIGKGLVRTAVL----IPyGIVTVVASYSWYYAWtpgtgylaNLLpyDS-APLTqqIPSLGIVVIAEVWKTTPF 182
Cdd:COG0395  100 ALARfRFRGRKLLFLLILatlmIP-GQVLLIPLYLLFRQL--------GLL--NTyWGLI--LPYLAFGLPFGIFLLRQF 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 624384414 183 MSLlllaglalVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLF 231
Cdd:COG0395  167 FRS--------IPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIF 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 85-284 2.52e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 2.52e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  85 LAVTLAITAVSVTIEFVLGLALALVM-HRTLIGKGLVRTAVLIPYGIVTVVASYSWYYawtpgtgylanLLPYDSAPLTQ 163
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILaRKRGKLDRLLRRIIDLLLSLPSLVLGLLLVL-----------LFGVLLGWGIL 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 164 QIPSLGIVVIAEVWkTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNI 243
Cdd:cd06261   70 PGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALV 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 624384414 244 YVLTGGSNNTGSVSILGYDNLFKGFNVGLGSAISVLIFGCV 284
Cdd:cd06261  149 SFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 64-226 8.68e-10

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 58.22  E-value: 8.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  64 TAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRT-LIGKGLVRTAVLIPYGIVTVVASYSWYYA 142
Cdd:COG0555   35 AAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYrFPGKRLVDALVDLPFALPTAVAGIALLLL 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 143 WTPgTGYLANLLpydsAPLTQQIP--SLGIVViAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPM 220
Cdd:COG0555  115 FGP-NGWLGQLL----APLGIKVAftPLGIVL-AQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPL 188


                 ....*.
gi 624384414 221 IKPAIV 226
Cdd:COG0555  189 LLPALL 194
malF PRK10999
maltose ABC transporter permease MalF;
171-294 1.09e-06

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 49.96  E-value: 1.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 171 VVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILP-MIKPaiVVALLFRTLdAFRiFDN---IYVL 246
Cdd:PRK10999 378 ILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPlLIKP--LTPLMIASF-AFN-FNNfvlIQLL 453

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 624384414 247 T-GGSNNTGSVSILGYDNL---------FKGF---NVGLGSAISVLIFGCVAVIAFIFIKL 294
Cdd:PRK10999 454 TnGGPDMIGTTTPAGYTDLlvsytyriaFEGGggqDFGLAAAIATLIFLLVGALAILNLKA 514
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 76-237 2.44e-06

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 47.78  E-value: 2.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414   76 LIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHR-TLIGKGLVRTAVLIPYGIVTVVASYSWYYAWtpgtGYLANLL 154
Cdd:TIGR01581  14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARvRFPLKKLLDTLLDLPMVLPPLVAGLALLLLF----GRNGLLG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  155 PYDSAPLTQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLF--- 231
Cdd:TIGR01581  90 PYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLawa 169


                  ....*.
gi 624384414  232 RTLDAF 237
Cdd:TIGR01581 170 RALGEF 175
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 6-239 1.49e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 45.76  E-value: 1.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414   6 QRTATAVFSRTGSRMAERRLAFMLVAPAAMLMVAVTAYPIGYALWLSLQrnnlatpnDTAFIGLGNYHTILIDRYWWTAL 85
Cdd:PRK15050   4 RVRASAAAHAAAARRRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLT--------GEHGLGLATYRAVLGSPDFRGAL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  86 AVTLAITAVSVTIEFVLGLALALVM-HRTLIGKGLVRTAvlipygIVTVVASYSWYYAWTPGTGY---------LANLLP 155
Cdd:PRK15050  76 LTTLQIAFASTAGCLVLGVLLALVLaFVPFPGASLVGRF------IDTFVAFPSFLITLAFTFLYgsagsvniaLQRLFG 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 156 YDSAPLtQQIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVA---LLFR 232
Cdd:PRK15050 150 LEAPPL-DFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGgslCLLL 228


                 ....*..
gi 624384414 233 TLDAFRI 239
Cdd:PRK15050 229 TLNEFGI 235
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 194-231 4.78e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 43.99  E-value: 4.78e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 624384414 194 VPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLF 231
Cdd:COG3833  169 IPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALL 206
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 171-295 1.69e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.52  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  171 VVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFDNIYVLtGGS 250
Cdd:pfam00528  55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSW 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 624384414  251 NNTGSVSILGYDNLFKGFNVGLGSAIsVLIFGCVAVIAFIFIKLF 295
Cdd:pfam00528 134 PGLGLLLIEAILGYDYPEIQGPVLAA-ALILLLLNLLVDILQRLL 177
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 61-230 1.76e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 42.75  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414   61 PNDTAFIGLGNYHTILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLI-GKGLVRTAVLIPYGIVTVVASYSW 139
Cdd:TIGR03262  32 DSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIpGKGAFRLVALLPLLAPSLLPAISL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  140 YYaWTPGTGYLANLLPYDSapltqqIPSLGIVVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILP 219
Cdd:TIGR03262 112 IY-LFGNQGLLKGLLGGFS------IYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLP 184

                         170
                  ....*....|.
gi 624384414  220 MIKPAIVVALL 230
Cdd:TIGR03262 185 GAKYGLISAAF 195
cysT CHL00187
sulfate transport protein; Provisional
 84-231 1.16e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 39.61  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  84 ALAVTLAITAVSVTIEFVLGLALALVMHR-TLIGKGLVRTAVLIPYGIVTVVAsyswyyawtpgtGYLANLLPYDSAPLT 162
Cdd:CHL00187  56 AYSLTLSMALIAALINGFFGLLIAWVLVRyNFPGKRLLDAAVDLPFALPTSVA------------GLTLATVYGDNGWIG 123

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 624384414 163 QQIPSLGIVV--------IAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLF 231
Cdd:CHL00187 124 HLLSHLGIQIvftklgvlLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLAL 200
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 171-252 3.41e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 38.52  E-value: 3.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414 171 VVIAEVWKTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVALLFRTLDAFRIFdniYV--LTG 248
Cdd:PRK09497 153 VIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF---YVsdLLG 229


                 ....
gi 624384414 249 GSNN 252
Cdd:PRK09497 230 GAKN 233
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 74-229 5.43e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 37.82  E-value: 5.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 624384414  74 TILIDRYWWTALAVTLAITAVSVTIEFVLGLALALVMHRTLIGKGLVRTAVLIPYGIVTVvasyswyyAWTPgtgYLANL 153
Cdd:COG0600   52 ELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPL--------ALAP---LLILW 120

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 624384414 154 LPYDSAPltqqipSLGIVVIAevwkTTPFMSLLLLAGLALVPEDLLRAAQVDGASAWRRLTKVILPMIKPAIVVAL 229
Cdd:COG0600  121 FGIGEAS------KIFVIFLG----AFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGL 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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