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Conserved domains on  [gi|2366864576|gb|KAJ0926371|]
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putative matrilysin [Helianthus annuus]

Protein Classification

peptidoglycan-binding domain-containing protein( domain architecture ID 10477928)

peptidoglycan-binding domain-containing protein may be involved in bacterial cell wall degradation, similar to Vibrio cholerae type VI secretion system (T6SS) effector protein VgrG3 and bacteriophage phi KZ lytic transglycosylase gp144

CATH:  1.10.530.10
Gene Ontology:  GO:0042834

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 83-150 2.86e-11

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


:

Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 55.60  E-value: 2.86e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2366864576  83 SGQEVAgisKLKSYLNQFGYItnnnsnnqPTKFNDYFDDALEHAIKIYQKSFNLNTTGILDSSTINQM 150
Cdd:pfam01471   1 SGEDVK---ELQRYLNRLGYY--------PGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLAAL 57
 
Name Accession Description Interval E-value
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 83-150 2.86e-11

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 55.60  E-value: 2.86e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2366864576  83 SGQEVAgisKLKSYLNQFGYItnnnsnnqPTKFNDYFDDALEHAIKIYQKSFNLNTTGILDSSTINQM 150
Cdd:pfam01471   1 SGEDVK---ELQRYLNRLGYY--------PGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLAAL 57
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 82-150 4.37e-04

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 37.19  E-value: 4.37e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2366864576  82 HSGQEVAgisKLKSYLNQFGYitnnnsnnQPTKFNDYFDDALEHAIKIYQKSFNLNTTGILDSSTINQM 150
Cdd:COG3409    10 DSGEDVR---ELQQRLNALGY--------YPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
 
Name Accession Description Interval E-value
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 83-150 2.86e-11

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 55.60  E-value: 2.86e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2366864576  83 SGQEVAgisKLKSYLNQFGYItnnnsnnqPTKFNDYFDDALEHAIKIYQKSFNLNTTGILDSSTINQM 150
Cdd:pfam01471   1 SGEDVK---ELQRYLNRLGYY--------PGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLAAL 57
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 82-150 4.37e-04

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 37.19  E-value: 4.37e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2366864576  82 HSGQEVAgisKLKSYLNQFGYitnnnsnnQPTKFNDYFDDALEHAIKIYQKSFNLNTTGILDSSTINQM 150
Cdd:COG3409    10 DSGEDVR---ELQQRLNALGY--------YPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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