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Conserved domains on  [gi|2047909164|gb|KAG6582006|]
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15-cis-phytoene desaturase, chloroplastic/chromoplastic, partial [Cucurbita argyrosperma subsp. sororia]

Protein Classification

PLN02612 superfamily protein( domain architecture ID 1903884)

PLN02612 superfamily protein

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN02612 super family cl42971
phytoene desaturase
 76-508 0e+00

phytoene desaturase


The actual alignment was detected with superfamily member PLN02612:

Pssm-ID: 215330 [Multi-domain]  Cd Length: 567  Bit Score: 895.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164  76 SPSSCKKSNGLAFWGSEFVGEGLKV---SGRYVNRKLSTGTLQLKVVCVDYPRPQIDDTANFLEAASLSASFRASARPSK 152
Cdd:PLN02612   13 WHSGFLDAQALAFRGSESMGHSLRVptsSSSRTRRRRNSGRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 153 PLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQW 232
Cdd:PLN02612   93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQW 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 233 KEHSMIFAMPNKPGEFSRFDFPDVLPAPINGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQSYVEAQDNLTVQEWMRSR 312
Cdd:PLN02612  173 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQ 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 313 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNSRIQ 392
Cdd:PLN02612  253 GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIK 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 393 KIELNNDGTVKRFLLNDGSVIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLF 472
Cdd:PLN02612  333 KIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLF 412

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 2047909164 473 SRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAED 508
Cdd:PLN02612  413 SRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEE 448
 
Name Accession Description Interval E-value
PLN02612 PLN02612
phytoene desaturase
 76-508 0e+00

phytoene desaturase


Pssm-ID: 215330 [Multi-domain]  Cd Length: 567  Bit Score: 895.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164  76 SPSSCKKSNGLAFWGSEFVGEGLKV---SGRYVNRKLSTGTLQLKVVCVDYPRPQIDDTANFLEAASLSASFRASARPSK 152
Cdd:PLN02612   13 WHSGFLDAQALAFRGSESMGHSLRVptsSSSRTRRRRNSGRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 153 PLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQW 232
Cdd:PLN02612   93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQW 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 233 KEHSMIFAMPNKPGEFSRFDFPDVLPAPINGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQSYVEAQDNLTVQEWMRSR 312
Cdd:PLN02612  173 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQ 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 313 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNSRIQ 392
Cdd:PLN02612  253 GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIK 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 393 KIELNNDGTVKRFLLNDGSVIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLF 472
Cdd:PLN02612  333 KIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLF 412

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 2047909164 473 SRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAED 508
Cdd:PLN02612  413 SRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEE 448
phytoene_desat TIGR02731
phytoene desaturase; Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a ...
 155-508 0e+00

phytoene desaturase; Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 131778 [Multi-domain]  Cd Length: 453  Bit Score: 702.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKE 234
Cdd:TIGR02731   1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 235 HSMIFAMPNKPGEFSRFDFPDvLPAPINGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQSYVEAQDNLTVQEWMRSRGV 314
Cdd:TIGR02731  81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 315 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNSRIQKI 394
Cdd:TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 395 ELNNDGTVKRFLLNDGS-----VIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIWFDRKLkNTYDH 469
Cdd:TIGR02731 240 VLNEDGSVKHFVLADGEgqrrfEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKL-TTVDH 318

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2047909164 470 LLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAED 508
Cdd:TIGR02731 319 LLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAAD 357
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 163-510 2.71e-71

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 234.31  E-value: 2.71e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 163 LAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDnDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMP 242
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRD-DGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDPAPFYTVL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 243 NKPGEFSRFDFPDVlPAPINGiwaILRNNEMLTWPEKIKFAIGLLPAMLggqSYVEAQDNLTVQEWMRSRG--------- 313
Cdd:pfam01593  80 FAGGRRYPGDFRRV-PAGWEG---LLEFGRLLSIPEKLRLGLAALASDA---LDEFDLDDFSLAESLLFLGrrgpgdvev 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 314 --VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAF-LDGNPPERLCEPIvehiqsLGGEVRLNSR 390
Cdd:pfam01593 153 wdRLIDPELFAALPFASGAFAGDPSELSAGLALPLLWALLGEGGSLLLPRgGLGALPDALAAQL------LGGDVRLNTR 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 391 IQKIELNNDGTvkRFLLNDGSVIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHL 470
Cdd:pfam01593 227 VRSIDREGDGV--TVTLTDGEVIEADAVIVTVPLGVLKRILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDLGLL 304

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2047909164 471 -LFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEDGF 510
Cdd:pfam01593 305 gLLSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGPGDRA 345
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 153-463 1.11e-69

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 229.74  E-value: 1.11e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 153 PLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDND-GDWYETGLHIFFGAYPNVQNLFGELGINDRLQ 231
Cdd:COG3349     3 PPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARSFPDPDtGLPIDNGQHVLLGCYRNTLDLLRRIGAADNLV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 232 WKEHsmiFAMPNKPGEFSRFDFPDvLPAPINGIWAILRNNEmLTWPEKikfaIGLLPAMLGGQ-SYVEAQDNLTVQEWMR 310
Cdd:COG3349    83 GPEP---LQFPLPGGRRWTLRAPR-LPAPLHLLRALLRAPG-LSLADR----LALLRLLTACReRRWRELDDISVADWLR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 311 SRGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNS 389
Cdd:COG3349   154 RHGQSPRLIRRLWEPLLLAALNTPPEQASARLALTVLREtLLAGPAASDLLVPRGPLSELFVDPALAYLEARGGEVRLGT 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2047909164 390 RIQKIELnNDGTVKRFLLNDGSVIEGDAYVFATPVDILKLLLPnDWKEIPYFKKLDKLVGVPVINVHIWFDRKL 463
Cdd:COG3349   234 RVRALEF-DGGRVTGLVLADGETVPADAVVLAVPPEVAARLLP-ELARLPELGLLAPLEYSPIVNVHLWLDRPV 305
 
Name Accession Description Interval E-value
PLN02612 PLN02612
phytoene desaturase
 76-508 0e+00

phytoene desaturase


Pssm-ID: 215330 [Multi-domain]  Cd Length: 567  Bit Score: 895.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164  76 SPSSCKKSNGLAFWGSEFVGEGLKV---SGRYVNRKLSTGTLQLKVVCVDYPRPQIDDTANFLEAASLSASFRASARPSK 152
Cdd:PLN02612   13 WHSGFLDAQALAFRGSESMGHSLRVptsSSSRTRRRRNSGRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 153 PLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQW 232
Cdd:PLN02612   93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQW 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 233 KEHSMIFAMPNKPGEFSRFDFPDVLPAPINGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQSYVEAQDNLTVQEWMRSR 312
Cdd:PLN02612  173 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQ 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 313 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNSRIQ 392
Cdd:PLN02612  253 GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIK 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 393 KIELNNDGTVKRFLLNDGSVIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLF 472
Cdd:PLN02612  333 KIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLF 412

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 2047909164 473 SRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAED 508
Cdd:PLN02612  413 SRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEE 448
phytoene_desat TIGR02731
phytoene desaturase; Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a ...
 155-508 0e+00

phytoene desaturase; Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 131778 [Multi-domain]  Cd Length: 453  Bit Score: 702.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKE 234
Cdd:TIGR02731   1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 235 HSMIFAMPNKPGEFSRFDFPDvLPAPINGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQSYVEAQDNLTVQEWMRSRGV 314
Cdd:TIGR02731  81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 315 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNSRIQKI 394
Cdd:TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 395 ELNNDGTVKRFLLNDGS-----VIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIWFDRKLkNTYDH 469
Cdd:TIGR02731 240 VLNEDGSVKHFVLADGEgqrrfEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKL-TTVDH 318

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2047909164 470 LLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAED 508
Cdd:TIGR02731 319 LLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAAD 357
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 163-510 2.71e-71

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 234.31  E-value: 2.71e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 163 LAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDnDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMP 242
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRD-DGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDPAPFYTVL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 243 NKPGEFSRFDFPDVlPAPINGiwaILRNNEMLTWPEKIKFAIGLLPAMLggqSYVEAQDNLTVQEWMRSRG--------- 313
Cdd:pfam01593  80 FAGGRRYPGDFRRV-PAGWEG---LLEFGRLLSIPEKLRLGLAALASDA---LDEFDLDDFSLAESLLFLGrrgpgdvev 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 314 --VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAF-LDGNPPERLCEPIvehiqsLGGEVRLNSR 390
Cdd:pfam01593 153 wdRLIDPELFAALPFASGAFAGDPSELSAGLALPLLWALLGEGGSLLLPRgGLGALPDALAAQL------LGGDVRLNTR 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 391 IQKIELNNDGTvkRFLLNDGSVIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHL 470
Cdd:pfam01593 227 VRSIDREGDGV--TVTLTDGEVIEADAVIVTVPLGVLKRILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDLGLL 304

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2047909164 471 -LFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEDGF 510
Cdd:pfam01593 305 gLLSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGPGDRA 345
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 153-463 1.11e-69

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 229.74  E-value: 1.11e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 153 PLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDND-GDWYETGLHIFFGAYPNVQNLFGELGINDRLQ 231
Cdd:COG3349     3 PPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARSFPDPDtGLPIDNGQHVLLGCYRNTLDLLRRIGAADNLV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 232 WKEHsmiFAMPNKPGEFSRFDFPDvLPAPINGIWAILRNNEmLTWPEKikfaIGLLPAMLGGQ-SYVEAQDNLTVQEWMR 310
Cdd:COG3349    83 GPEP---LQFPLPGGRRWTLRAPR-LPAPLHLLRALLRAPG-LSLADR----LALLRLLTACReRRWRELDDISVADWLR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 311 SRGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNS 389
Cdd:COG3349   154 RHGQSPRLIRRLWEPLLLAALNTPPEQASARLALTVLREtLLAGPAASDLLVPRGPLSELFVDPALAYLEARGGEVRLGT 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2047909164 390 RIQKIELnNDGTVKRFLLNDGSVIEGDAYVFATPVDILKLLLPnDWKEIPYFKKLDKLVGVPVINVHIWFDRKL 463
Cdd:COG3349   234 RVRALEF-DGGRVTGLVLADGETVPADAVVLAVPPEVAARLLP-ELARLPELGLLAPLEYSPIVNVHLWLDRPV 305
PLN02487 PLN02487
zeta-carotene desaturase
 154-511 7.95e-64

zeta-carotene desaturase


Pssm-ID: 215268 [Multi-domain]  Cd Length: 569  Bit Score: 217.75  E-value: 7.95e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 154 LKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWK 233
Cdd:PLN02487   76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLVK 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 234 EHSMIFAmpNKPGEFSRFDFPDVLPAPINGIWAILRNNEmLTWPEKIK--FAIGLLP---AML---GGQSYVEAQDNLTV 305
Cdd:PLN02487  156 DHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLTTNQ-LEPYDKARnaLALATSPvvrALVdpdGAMRDIRDLDDISF 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 306 QEWMRSRGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEV 385
Cdd:PLN02487  233 SDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRF 312

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 386 RLNSRIQKI--ELNNDGT--VKRFLLNDGS---VIEGDAYVFATPVDILKLLLPNDWKEIPYFKKLDKLVGVPVINVHIW 458
Cdd:PLN02487  313 HLRWGCREIlyDKSPDGEtyVTGLKVSKATekeIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLR 392

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2047909164 459 FD------------RKLKNT--YDHLLFSRSPLLSVYADMSVTC-KEYYNPNQ-SMLELVFAPAEDGFP 511
Cdd:PLN02487  393 YNgwvtemqdlelsRQLRRAagLDNLLYSADADFSCFADLALTSpEDYYKEGEgSLIQAVLTPGDPYMP 461
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 155-482 5.16e-35

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 136.50  E-value: 5.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDnDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKE 234
Cdd:COG1232     3 RVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEV-DGFRIDRGPHSFLTRDPEVLELLRELGLGDELVWPN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 235 H--SMIFampnKPGEFsrFDFPDvlpapinGIWAILRNNeMLTWPEKIKFAIGLLpamlggQSYVEAQDNLTVQEWMRSR 312
Cdd:COG1232    82 TrkSYIY----YGGKL--HPLPQ-------GPLALLRSP-LLSLAGKLRALLELL------APRRPPGEDESLAEFVRRR 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 313 -GvpDRVTTEVFIAMSKALNFINPDELSMQCI-------------LI--ALNRFLQEKHGSKMAFLDGNpPERLCEPIVE 376
Cdd:COG1232   142 fG--REVYERLVEPLLEGVYAGDPDELSADWAfprlkrlelehgsLIkgALALRKGAKAGEVFGYLRGG-LGTLVEALAE 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 377 HIQSlgGEVRLNSRIQKIELNNDGTvkRFLLNDGSVIEGDAYVFATPVDILKLLLPNDWKEipYFKKLDKLVGVPVINVH 456
Cdd:COG1232   219 ALEA--GEIRLGTRVTAIEREGGGW--RVTTSDGETIEADAVVSATPAPALARLLAPLPPE--VAAALAGIPYASVAVVA 292

                         330       340
                  ....*....|....*....|....*...
gi 2047909164 457 IWFDRKLKNTYDH--LLFSRSPLLSVYA 482
Cdd:COG1232   293 LGFDRPDLPPPDGfgWLVPRDEGVPILA 320
PRK07233 PRK07233
hypothetical protein; Provisional
 155-467 4.20e-29

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 119.22  E-value: 4.20e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDnDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKE 234
Cdd:PRK07233    1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEF-GGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 235 HSMIFAMPNKpgefsrfdfpdvlPAPINGIWAILRnnemltWP-----EKIKFaiGLLPAMLGGQSYVEAQDNLTVQEWM 309
Cdd:PRK07233   80 TKTGYYVDGK-------------LYPLGTPLELLR------FPhlsliDKFRL--GLLTLLARRIKDWRALDKVPAEEWL 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 310 RsRGVPDRVTTEVFIAMSKALNFINPDELSMQCIL--IAL--NRFLqEKHGSKMAFLDGNpPERLCEPIVEHIQSLGGEV 385
Cdd:PRK07233  139 R-RWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWsrIKRrgNRRY-SLFGEKLGYLEGG-FATLIDALAEAIEARGGEI 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 386 RLNSRIQKIELNNDGTVKrfLLNDGSVIEGDAYVFATPVDILKLLLPND-------WKEIPYfkkldklvgVPVINVHIW 458
Cdd:PRK07233  216 RLGTPVTSVVIDGGGVTG--VEVDGEEEDFDAVISTAPPPILARLVPDLpadvlarLRRIDY---------QGVVCMVLK 284


                  ....*....
gi 2047909164 459 FDRKLKNTY 467
Cdd:PRK07233  285 LRRPLTDYY 293
HpnE TIGR03467
squalene-associated FAD-dependent desaturase; The sequences in this family are members of the ...
 167-464 9.26e-27

squalene-associated FAD-dependent desaturase; The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.


Pssm-ID: 274593 [Multi-domain]  Cd Length: 419  Bit Score: 112.46  E-value: 9.26e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 167 STAKYLADAGHKPVLLEARDVLGGKVAA-WKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPnkP 245
Cdd:TIGR03467   1 SAAVELARAGARVTLFEARPRLGGRARSfEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDP--G 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 246 GEFSRFDFPDvLPAPINGIWAILRNNEmLTWPEKIKFAIGLLPAMLGGQSyveAQDNLTVQEWMRSRGVPDRvTTEVF-- 323
Cdd:TIGR03467  79 GRLSRLRLSR-LPAPLHLARGLLRAPG-LSWADKLALARALLALRRTRFR---ALDDTTVGDWLQAAGQSER-LIERLwe 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 324 -IAMSkALNfINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLCEPIVEHIQSLGGEVRLNSRIQKIELNNDGt 401
Cdd:TIGR03467 153 pLLLS-ALN-TPPERASAALAAKVLRDsFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG- 229

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2047909164 402 VKRFLLNDGSVIEGDAYVFATPVDILKLLLPndwkEIPYFKKLDKLVGVPVINVHIWFDRKLK 464
Cdd:TIGR03467 230 IRALVRSGGETLPADAVVLAVPPRHAASLLP----GEDLGALLTALGYSPITTVHLRLDRAVR 288
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 155-472 2.02e-22

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 100.31  E-value: 2.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDnDGDWYETGLHIFFGAYPnVQNLFGELGINDRLQWKE 234
Cdd:COG1233     5 DVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFER-PGFRFDVGPSVLTMPGV-LERLFRELGLEDYLELVP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 235 HSMIFAMPNKPGefSRFDFPD-----------VLPAPINGIWAILR--------------NNEMLTWPEKIKFAIGLLPA 289
Cdd:COG1233    83 LDPAYRVPFPDG--RALDLPRdlertaaelerLFPGDAEAYRRFLAelrrlydalledllYRPLLSLRDLLRPLALARLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 290 MLGGQSyveaqdnltVQEWMRSrgvpdRVTTEVFIAMskaLNFI------NPDELSMQCILIALnrflqekhgskMAFLD 363
Cdd:COG1233   161 RLLLRS---------LRDLLRR-----YFKDPRLRAL---LAGQalylglSPDRTPALYALIAY-----------LEYAG 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 364 GNP-PE----RLCEPIVEHIQSLGGEVRLNSRIQKIELNNdGTVKRFLLNDGSVIEGDAYVF-ATPVDILKLLLPNDWKE 437
Cdd:COG1233   213 GVWyPKggmgALADALARLAEELGGEIRTGAEVERILVEG-GRATGVRLADGEEIRADAVVSnADPAHTYLRLLGEEALP 291

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2047909164 438 IPYFKKLDKL-VGVPVINVHIWFDRKLKNTYDHLLF 472
Cdd:COG1233   292 ARYRRRLERFrYSPSAFKLYLGLDGPLPGLAHHTIH 327
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
148-461 4.40e-21

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 95.76  E-value: 4.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 148 ARPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVaaW---KDNDGDWYETGLHIFFGAYPNVQNLFGEL 224
Cdd:COG1231     2 SRRARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRV--WtlrFGDDGLYAELGAMRIPPSHTNLLALAREL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 225 GIndrlqwkehsmifampnkpgefSRFDFPDVLPA---PINGIWAilRNNEMLTWPEKIKFAIGLLPAML-----GGQSY 296
Cdd:COG1231    80 GL----------------------PLEPFPNENGNallYLGGKRV--RAGEIAADLRGVAELLAKLLRALaaaldPWAHP 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 297 VEAQDNLTVQEWMRSRGVPDRVtTEVFIAMSKALNFINPDELSMQCILIALnrFLQEKHGSKMAFLDGNppERLCEPIVE 376
Cdd:COG1231   136 AAELDRESLAEWLRRNGASPSA-RRLLGLLGAGEYGADPDELSLLDLLRYA--ASAGGGAQQFRIVGGM--DQLPRALAA 210

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 377 HiqsLGGEVRLNSRIQKIELNNDG-TVKrflLNDGSVIEGDAYVFATPVDILKLL-----LPNDWKEIpyfkkLDKLVGV 450
Cdd:COG1231   211 E---LGDRIRLGAPVTRIRQDGDGvTVT---TDDGGTVRADAVIVTVPPSVLRRIefdppLPAAKRAA-----IQRLPYG 279

                         330
                  ....*....|.
gi 2047909164 451 PVINVHIWFDR 461
Cdd:COG1231   280 AAIKVFLQFDR 290
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
158-224 2.30e-14

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 67.94  E-value: 2.30e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2047909164 158 IAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDnDGDWYETGLHIFFGA-YPNVQNLFGEL 224
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRV-PGYVFDYGAHIFHGSdEPNVRDLLDEL 67
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
 155-462 5.84e-10

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 61.39  E-value: 5.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLA----DAGHKPVLLEARDVLGGKVAAwKDNDGDWYETGLHIFFGAYPNVQNLFGELGINDRL 230
Cdd:TIGR00562   4 HVVIIGGGISGLCAAYYLEkeipELPVELTLVEASDRVGGKIQT-VKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 231 Q----------WKEHSMIfAMPNKPGEFSRFDFpdvlpAPINGiwailrnnemltwpeKIKFAI-GLLPAMLGgqsyvea 299
Cdd:TIGR00562  83 VsdatgqryvlVNRGKLM-PVPTKIAPFVKTGL-----FSLGG---------------KLRAGMdFIRPASPG------- 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 300 QDNlTVQEWMRSRgVPDRVTTEVFIAMSKALNFINPDELSMQCiliALNRF--LQEKHGS-------KMAFLDGNPPERL 370
Cdd:TIGR00562 135 KDE-SVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKS---TFPKFyqTEQKHGSlilgmkkTRNLPQGSGLQLT 209

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 371 CEPIVEHIQSLGG-------EVRLNSRIQKI-------ELNNDGTVKRFLLNDGSVIEGDAYVFATPVDILKLLLPNDwk 436
Cdd:TIGR00562 210 AKKQGQDFQTLATgletlpeEIEKRLKLTKVykgtkvtKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSEL-- 287

                         330       340
                  ....*....|....*....|....*.
gi 2047909164 437 EIPYFKKLDKLVGVPVINVHIWFDRK 462
Cdd:TIGR00562 288 SNSASSHLDKIHSPPVANVNLGFPEG 313
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 155-468 6.40e-10

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 61.40  E-value: 6.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYL--ADAGHKPVLLEARDVLGGKVAAWKDnDGDWYETGLHIFFGAYPNVQNLFGELGINDRL-- 230
Cdd:PRK11883    2 KVAIIGGGITGLSAAYRLhkKGPDADITLLEASDRLGGKIQTVRK-DGFPIELGPESFLARKPSAPALVKELGLEDELva 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 231 ----------QWKEHSM----IFAMPNKPGEFSRFD-FPDVLPAPINGIWAILRNNemltwpekikfaigllpamlggqs 295
Cdd:PRK11883   81 nttgqsyiyvNGKLHPIppgtVMGIPTSIAPFLFAGlVSPIGKLRAAADLRPPRWK------------------------ 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 296 yvEAQDNlTVQEWMRsrgvpDRVTTEVFIamskalNFINP----------DELSMQCILIALNRFLQeKHGSKM-AFLDG 364
Cdd:PRK11883  137 --PGQDQ-SVGAFFR-----RRFGDEVVE------NLIEPllsgiyagdiDTLSLRATFPQLAQAED-KYGSLLrGMRKA 201

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 365 NPPER----------------LCEPIVEHIQSlgGEVRLNSRIQKIELNNDGtvKRFLLNDGSVIEGDAYVFATPVDILK 428
Cdd:PRK11883  202 LPKEKkktkgvfgtlkgglqsLIEALEEKLPA--GTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPHPVLP 277

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2047909164 429 LLLPNDwKEIPYFKKldklvgVP---VINVHIWFDRKLKNTYD 468
Cdd:PRK11883  278 SLFVAP-PAFALFKT------IPstsVATVALAFPESATNLPD 313
PLN02576 PLN02576
protoporphyrinogen oxidase
 142-431 7.83e-10

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 61.18  E-value: 7.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 142 ASFRASARPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLL-EARDVLGGKVAAwKDNDGDWYETGLHIFFGAYPNVQNL 220
Cdd:PLN02576    1 SAIAEGSAAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVtEARDRVGGNITS-VSEDGFIWEEGPNSFQPSDPELTSA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 221 FgELGINDRLQwkehsmiFAMPNKPgefsRFDFPDVLPAPI--NGIWAILRNneMLTWPEKIKF---AIGLL-PAMLGGQ 294
Cdd:PLN02576   80 V-DSGLRDDLV-------FPDPQAP----RYVVWNGKLRPLpsNPIDLPTFD--LLSAPGKIRAglgAFGWKrPPPPGRE 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 295 SyveaqdnlTVQEWMR---SRGVPDRVtTEVFIAMSKALnfiNPDELSMQC---------------ILIALNRFLQEKHG 356
Cdd:PLN02576  146 E--------SVGEFVRrhlGDEVFERL-IDPFVSGVYAG---DPSSLSMKAafpklwnlekrggsiIGGAIKAIQEAKKN 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 357 SKMAFLDGNPPER--------------LCEPIVEhiqSLGGE-VRLNSRIQKIELNNDGTVK-RFLLNDGSV-IEGDAYV 419
Cdd:PLN02576  214 PKPEPRDPRLPKPkgqtvgsfrgglqtLPDALAK---RLGKDkVKLNWKVLSLSKNDDGGYSlTYDTPEGKVnVTAKAVV 290

                         330
                  ....*....|..
gi 2047909164 420 FATPVDILKLLL 431
Cdd:PLN02576  291 MTAPLYVVSEML 302
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
155-422 1.61e-09

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 59.53  E-value: 1.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVL-------GGKVAAWKDNDGDWYETGLHIFfgAYPNVQNLFGELGIN 227
Cdd:COG0665     4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGsgasgrnAGQLRPGLAALADRALVRLARE--ALDLWRELAAELGID 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 228 DRLQWkehsmifampnkpgefsrfdfpdvlpapiNGIWAILRNNEmltwpekikfaigllpamlggqsyvEAQDNLTVQE 307
Cdd:COG0665    82 CDFRR-----------------------------TGVLYLARTEA-------------------------ELAALRAEAE 107

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 308 WMRSRGVPdrvttevfiamskaLNFINPDELSMQCILIALNRF---LQEKHGskmAFLDgnpPERLCEPIVEHIQSLGGE 384
Cdd:COG0665   108 ALRALGLP--------------VELLDAAELREREPGLGSPDYaggLYDPDD---GHVD---PAKLVRALARAARAAGVR 167

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2047909164 385 VRLNSRIQKIELNNDGtVKRFLLNDGsVIEGDAYVFAT 422
Cdd:COG0665   168 IREGTPVTGLEREGGR-VTGVRTERG-TVRADAVVLAA 203
Ppro0129 COG2907
Predicted flavin-containing amine oxidase [General function prediction only];
152-430 5.51e-08

Predicted flavin-containing amine oxidase [General function prediction only];


Pssm-ID: 442151 [Multi-domain]  Cd Length: 423  Bit Score: 55.12  E-value: 5.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 152 KPLKIVIAGAGLAGLSTAKYLADAgHKPVLLEARDVLGG---KVAAwkDNDGDWY--ETGLhIFF--GAYPNVQNLFGEL 224
Cdd:COG2907     2 ARMRIAVIGSGISGLTAAWLLSRR-HDVTLFEANDRLGGhthTVDV--DLDGRTVpvDTGF-IVFneRTYPNLTALFAEL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 225 GIndrlQWKEHSMIFAMPNKPG--EFSRFDFPDVLPAPINGI----WAILRnnEMLtwpekiKF---AIGLLPAmlggqs 295
Cdd:COG2907    78 GV----PTQPSDMSFSVSLDGGglEYAGSNLNGLFAQRRNLLrprfWRMLR--DIL------RFnreAPALLEA------ 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 296 yvEAQDNLTVQEWMRSRGVPDRVTTEVFIAMSKAlnfI--NPDELSMQCILIALNRFLqEKHGskMAFLDGNPP------ 367
Cdd:COG2907   140 --GSDDDLTLGEFLDRNGYSEAFRDHYLLPMGAA---IwsCPPDDMLDFPARFFVRFF-HNHG--LLSVTDRPQwrtvkg 211

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2047909164 368 ------ERLcepivehIQSLGGEVRLNSRIQKIELNNDG-TVKrflLNDGSVIEGDAYVFATPVD-ILKLL 430
Cdd:COG2907   212 gsreyvRRL-------TAGLKDRIRLNTPVRSVRRDADGvEVR---TADGEEERFDHVVFATHSDqALALL 272
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 148-198 7.31e-08

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 54.48  E-value: 7.31e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2047909164 148 ARPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGkvaAWKDN 198
Cdd:COG2072     1 TAATEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG---TWRDN 48
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 155-264 8.54e-08

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 54.17  E-value: 8.54e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAwkdndgdwyeTGLHiffgayPNVQNLFGELGINDRL---- 230
Cdd:COG0654     5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRG----------IALS------PRSLELLRRLGLWDRLlarg 68

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2047909164 231 -QWkeHSMIFAMPNKPGEFSRFDFPDVLPAPINGI 264
Cdd:COG0654    69 aPI--RGIRVRDGSDGRVLARFDAAETGLPAGLVV 101
PRK07208 PRK07208
hypothetical protein; Provisional
 155-427 7.76e-07

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 51.43  E-value: 7.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGkVAAWKDNDGDWYETGLHIFFGAYPNVQNLfgelgindrlqWKE 234
Cdd:PRK07208    6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG-ISRTVTYKGNRFDIGGHRFFSKSPEVMDL-----------WNE 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 235 HsmifaMPNKpgEF------SR-------FDFPdvlpapingiwaiLRNNEMLTwpekikfAIGLLPAMLGGQSYVEAQ- 300
Cdd:PRK07208   74 I-----LPDD--DFllrprlSRiyyrgkfFDYP-------------LKAFDALK-------NLGLWRTAKCGASYLKARl 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 301 ------DNLtvQEWMRSR-GVpdRVTTEVFIAMSKALNFINPDELS-------------MQCILIALNRFLQEKHGSKMA 360
Cdd:PRK07208  127 rprkeeDSF--EDWVINRfGR--RLYSTFFKGYTEKVWGVPCDEISadwaaqrikglslGKAIRNALRRSLGLKRRNKEV 202

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 361 -------FLdgNP---PERLCEPIVEHIQSLGGEVRLNSRIQKIELNNDGTVKRFLLNDG----SVIEGDaYVFAT-PVD 425
Cdd:PRK07208  203 etslieeFR--YPklgPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTdgteETVTAD-QVISSmPLR 279


                  ..
gi 2047909164 426 IL 427
Cdd:PRK07208  280 EL 281
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
155-197 1.98e-06

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 49.73  E-value: 1.98e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEaRDVLGGKVAAWKD 197
Cdd:COG0492     2 DVVIIGAGPAGLTAAIYAARAGLKTLVIE-GGEPGGQLATTKE 43
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
155-206 2.30e-06

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 49.49  E-value: 2.30e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAwKDNDGDWYETG 206
Cdd:COG3380     5 DIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGGRMAT-RRLDGGRFDHG 55
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
146-195 3.15e-06

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 49.86  E-value: 3.15e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2047909164 146 ASARPSKPL---------KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAW 195
Cdd:COG1148   124 AKAKLLEPLepikvpvnkRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGRAAQL 182
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 155-190 8.58e-06

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 47.78  E-value: 8.58e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGS 36
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 147-190 1.42e-05

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 47.44  E-value: 1.42e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2047909164 147 SARPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:COG0493   115 PPAPRTGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
PLN02268 PLN02268
probable polyamine oxidase
 153-192 1.76e-05

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 47.37  E-value: 1.76e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2047909164 153 PLKIVIaGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKV 192
Cdd:PLN02268    1 PSVIVI-GGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39
PLN02676 PLN02676
polyamine oxidase
 139-192 5.25e-05

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 45.86  E-value: 5.25e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2047909164 139 SLSASFRASARPSkplkIVIAGAGLAGLSTAKYLADAGHKPVL-LEARDVLGGKV 192
Cdd:PLN02676   16 FAVAAMDAKPSPS----VIIVGAGMSGISAAKTLSEAGIEDILiLEATDRIGGRM 66
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 150-190 7.86e-05

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 45.17  E-value: 7.86e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2047909164 150 PSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:PRK11749  137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 133-196 1.21e-04

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 44.98  E-value: 1.21e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2047909164 133 NFLEAASLSASFRASARPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWK 196
Cdd:PLN02328  218 NFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK 281
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
161-254 1.78e-04

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 43.42  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 161 AGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWkdndgdwyetglhiffGAYPNVQNLFGELGINDRLQWKEHSMIFA 240
Cdd:COG0644     1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGG----------------GLLPRALEELEPLGLDEPLERPVRGARFY 64

                          90
                  ....*....|....
gi 2047909164 241 MPNkpGEFSRFDFP 254
Cdd:COG0644    65 SPG--GKSVELPPG 76
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 149-190 1.80e-04

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 44.00  E-value: 1.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2047909164 149 RPSKPL-----KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:PRK12810  134 KPDPPVkrtgkKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
PLN02529 PLN02529
lysine-specific histone demethylase 1
 156-208 3.04e-04

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 43.73  E-value: 3.04e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2047909164 156 IVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVAAWKDNDGDWYE---------TGLH 208
Cdd:PLN02529  163 VIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAavdlggsviTGIH 224
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
156-195 4.10e-04

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 42.86  E-value: 4.10e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2047909164 156 IVIAGAGLAGLSTAKYLADAGHKPVLL--EARDVLGGKvAAW 195
Cdd:COG3573     8 VIVVGAGLAGLVAAAELADAGRRVLLLdqEPEANLGGQ-AFW 48
PLN02976 PLN02976
amine oxidase
 155-192 4.35e-04

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 43.32  E-value: 4.35e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2047909164  155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKV 192
Cdd:PLN02976   695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732
PLN03000 PLN03000
amine oxidase
 133-192 4.39e-04

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 43.08  E-value: 4.39e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 133 NFLEAASLSASFraSARPSKPlKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKV 192
Cdd:PLN03000  167 NFGIAQAIKDKF--PAQSSKS-SVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 155-422 5.23e-04

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 42.31  E-value: 5.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 155 KIVIAGAGLAGLSTAKYLADAGHKPVLLEARD-----------VLGGKVAAWKD--NDGDWYETGLHIFFGAYPNVQNLF 221
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGtcpyggcvlskALLGAAEAPEIasLWADLYKRKEEVVKKLNNGIEVLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 222 GELGINDRLQWKEhsmIFAMPNKPGEFSRFDFPDVLPAPinGIWAILrnnemLTWPEKIKFAIGLLpamlggqsyveaqD 301
Cdd:pfam07992  82 GTEVVSIDPGAKK---VVLEELVDGDGETITYDRLVIAT--GARPRL-----PPIPGVELNVGFLV-------------R 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047909164 302 NLTVQEWMRSRGVPDRVTteV----FIAMSKALNFINpdeLSMQCILIALNRFLQEKHGSKMAfldgnpperlcEPIVEH 377
Cdd:pfam07992 139 TLDSAEALRLKLLPKRVV--VvgggYIGVELAAALAK---LGKEVTLIEALDRLLRAFDEEIS-----------AALEKA 202

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2047909164 378 IQSLGGEVRLNSRIQKIElnNDGTVKRFLLNDGSVIEGDAYVFAT 422
Cdd:pfam07992 203 LEKNGVEVRLGTSVKEII--GDGDGVEVILKDGTEIDADLVVVAI 245
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 125-190 6.18e-04

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 42.55  E-value: 6.18e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2047909164 125 RPQIDDTAN------FL--EAASLSASFRASARPS-KplKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:PRK12771  102 RGQVDDAVGinaverFLgdYAIANGWKFPAPAPDTgK--RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 156-190 1.45e-03

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 40.97  E-value: 1.45e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2047909164 156 IVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:COG1053     6 VVVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGG 40
PRK12834 PRK12834
putative FAD-binding dehydrogenase; Reviewed
 156-195 1.95e-03

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 183782 [Multi-domain]  Cd Length: 549  Bit Score: 40.65  E-value: 1.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2047909164 156 IVIAGAGLAGLSTAKYLADAGHKPVLL--EARDVLGGKvAAW 195
Cdd:PRK12834    7 VIVVGAGLAGLVAAAELADAGKRVLLLdqENEANLGGQ-AFW 47
PRK06370 PRK06370
FAD-containing oxidoreductase;
149-190 3.35e-03

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 39.80  E-value: 3.35e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2047909164 149 RPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEaRDVLGG 190
Cdd:PRK06370    1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIE-RGLLGG 41
PRK07588 PRK07588
FAD-binding domain;
154-184 4.20e-03

FAD-binding domain;


Pssm-ID: 169028 [Multi-domain]  Cd Length: 391  Bit Score: 39.72  E-value: 4.20e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2047909164 154 LKIVIAGAGLAGLSTAKYLADAGHKPVLLEA 184
Cdd:PRK07588    1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIER 31
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 149-190 5.00e-03

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 39.71  E-value: 5.00e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2047909164 149 RPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:PRK12814  189 APKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
150-228 5.20e-03

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 39.25  E-value: 5.20e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2047909164 150 PSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGgkvaawkdndgdwyETGLHIFFGayPNVQNLFGELGIND 228
Cdd:PRK08163    1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG--------------EIGAGIQLG--PNAFSALDALGVGE 63
PRK07512 PRK07512
L-aspartate oxidase; Provisional
 156-195 5.65e-03

L-aspartate oxidase; Provisional


Pssm-ID: 236036 [Multi-domain]  Cd Length: 513  Bit Score: 39.12  E-value: 5.65e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2047909164 156 IVIAGAGLAGLSTAKYLADaghKPVLLEARDVLG-GKVAAW 195
Cdd:PRK07512   12 PVIVGGGLAGLMAALKLAP---RPVVVLSPAPLGeGASSAW 49
PTZ00306 PTZ00306
NADH-dependent fumarate reductase; Provisional
 132-193 6.26e-03

NADH-dependent fumarate reductase; Provisional


Pssm-ID: 140327 [Multi-domain]  Cd Length: 1167  Bit Score: 39.38  E-value: 6.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2047909164  132 ANFLEAASLSASFRAS-ARPSKPLKIVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGGKVA 193
Cdd:PTZ00306   387 AHMFEIATEDAEMRKKrIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 156-190 6.86e-03

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 38.81  E-value: 6.86e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2047909164 156 IVIAGAGLAGLSTAKYLADAGHKPVLLEARDVLGG 190
Cdd:pfam00890   2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGG 36
PRK13977 PRK13977
myosin-cross-reactive antigen; Provisional
 144-190 7.42e-03

myosin-cross-reactive antigen; Provisional


Pssm-ID: 237575  Cd Length: 576  Bit Score: 39.04  E-value: 7.42e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2047909164 144 FRASARPSKPL-----KIVIAGAGLAGLSTAKYLADAGHKP----VLLEARDVLGG 190
Cdd:PRK13977    8 YEAFARPRKPEgvdnkKAYIIGSGLASLAAAVFLIRDGQMPgeniTILEELDVPGG 63
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 131-186 8.38e-03

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 38.67  E-value: 8.38e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2047909164 131 TANFLEAASLSASFRASARPSKPL--KIVIAGAGLAGLSTAKYLADAGHKPVLLEARD 186
Cdd:PRK01747  236 VGELEQTLPAPLAAPWFARPGSPKarDAAIIGGGIAGAALALALARRGWQVTLYEADE 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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