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Conserved domains on  [gi|1770269868|gb|KAE7995563|]
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hypothetical protein FH972_000343 [Carpinus fangiana]

Protein Classification

DUF3774 domain-containing protein( domain architecture ID 10576462)

DUF3774 domain-containing protein similar to Arabidopsis thaliana wound-responsive family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 9-77 4.88e-18

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


:

Pssm-ID: 463641  Cd Length: 77  Bit Score: 70.45  E-value: 4.88e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1770269868  9 VLQGMKDQ-ASKCDSTVKSLRDSPCSS--SSKQAKLFSGAFDSAAlKAANNEKIKQAEESFRTVMYLSCWGP 77
Cdd:pfam12609  7 AVEALKDQgLCRWNYALRSLHQHAKSSarSLSQAKKGSDSAGVAR-SSSSEEKRKQAEESLRTVMYLSCWGP 77
 
Name Accession Description Interval E-value
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 9-77 4.88e-18

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


Pssm-ID: 463641  Cd Length: 77  Bit Score: 70.45  E-value: 4.88e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1770269868  9 VLQGMKDQ-ASKCDSTVKSLRDSPCSS--SSKQAKLFSGAFDSAAlKAANNEKIKQAEESFRTVMYLSCWGP 77
Cdd:pfam12609  7 AVEALKDQgLCRWNYALRSLHQHAKSSarSLSQAKKGSDSAGVAR-SSSSEEKRKQAEESLRTVMYLSCWGP 77
PLN00165 PLN00165
hypothetical protein; Provisional
 35-78 4.05e-09

hypothetical protein; Provisional


Pssm-ID: 165732  Cd Length: 88  Bit Score: 48.16  E-value: 4.05e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1770269868 35 SSKQAKLFSGAFDSAALKAANNEKIKQAEESFRTVMYLSCWGPN 78
Cdd:PLN00165  45 SFSQAKKLSSSSSAMVSSRVREEKAKQSEESLRTVMYLSCWGPN 88
 
Name Accession Description Interval E-value
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 9-77 4.88e-18

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


Pssm-ID: 463641  Cd Length: 77  Bit Score: 70.45  E-value: 4.88e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1770269868  9 VLQGMKDQ-ASKCDSTVKSLRDSPCSS--SSKQAKLFSGAFDSAAlKAANNEKIKQAEESFRTVMYLSCWGP 77
Cdd:pfam12609  7 AVEALKDQgLCRWNYALRSLHQHAKSSarSLSQAKKGSDSAGVAR-SSSSEEKRKQAEESLRTVMYLSCWGP 77
PLN00165 PLN00165
hypothetical protein; Provisional
 35-78 4.05e-09

hypothetical protein; Provisional


Pssm-ID: 165732  Cd Length: 88  Bit Score: 48.16  E-value: 4.05e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1770269868 35 SSKQAKLFSGAFDSAALKAANNEKIKQAEESFRTVMYLSCWGPN 78
Cdd:PLN00165  45 SFSQAKKLSSSSSAMVSSRVREEKAKQSEESLRTVMYLSCWGPN 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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