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Conserved domains on  [gi|1735206500|gb|KAA0048294|]
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putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]

Protein Classification

transposase family protein( domain architecture ID 4270)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0003677|GO:0032196|GO:0015074

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transposase_24 super family cl03830
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 76-201 6.88e-11

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


The actual alignment was detected with superfamily member pfam03004:

Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 59.76  E-value: 6.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735206500  76 HWEEFVRLRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEEMKEGSNEVyVDRAKMWKKARVNKQGQYDNDDIQQV 155
Cdd:pfam03004   4 VWKGLVAYWDTEKAKKRSEKNSKNRGLGPHKHTSGSKSFARIRKEMEEEKGRT-PTRAEVFIETHTKKDGTYVDKKAEEI 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1735206500 156 VHKIDEI------SMNTDSSSVNRHCS--NDVLTQALGTKEHNdRVRGIGGYVT 201
Cdd:pfam03004  83 VDQVQELlqerlsESESETSSVSDGSSdkDEIFLQVVGKDKKG-RVYGLGSLQT 135
 
Name Accession Description Interval E-value
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 76-201 6.88e-11

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 59.76  E-value: 6.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735206500  76 HWEEFVRLRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEEMKEGSNEVyVDRAKMWKKARVNKQGQYDNDDIQQV 155
Cdd:pfam03004   4 VWKGLVAYWDTEKAKKRSEKNSKNRGLGPHKHTSGSKSFARIRKEMEEEKGRT-PTRAEVFIETHTKKDGTYVDKKAEEI 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1735206500 156 VHKIDEI------SMNTDSSSVNRHCS--NDVLTQALGTKEHNdRVRGIGGYVT 201
Cdd:pfam03004  83 VDQVQELlqerlsESESETSSVSDGSSdkDEIFLQVVGKDKKG-RVYGLGSLQT 135
 
Name Accession Description Interval E-value
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 76-201 6.88e-11

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 59.76  E-value: 6.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735206500  76 HWEEFVRLRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEEMKEGSNEVyVDRAKMWKKARVNKQGQYDNDDIQQV 155
Cdd:pfam03004   4 VWKGLVAYWDTEKAKKRSEKNSKNRGLGPHKHTSGSKSFARIRKEMEEEKGRT-PTRAEVFIETHTKKDGTYVDKKAEEI 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1735206500 156 VHKIDEI------SMNTDSSSVNRHCS--NDVLTQALGTKEHNdRVRGIGGYVT 201
Cdd:pfam03004  83 VDQVQELlqerlsESESETSSVSDGSSdkDEIFLQVVGKDKKG-RVYGLGSLQT 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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