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Conserved domains on  [gi|1735194839|gb|KAA0036711|]
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cell wall protein RBR3-like [Cucumis melo var. makuwa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transposase_32 super family cl20242
Putative plant transposon protein; This entry represents a likely transposon related protein ...
 212-333 9.04e-09

Putative plant transposon protein; This entry represents a likely transposon related protein from plants. This entry appears related to ORF1 from the ATHILA group of Arabidopsis thaliana retrotransposons pfam03078.


The actual alignment was detected with superfamily member pfam20167:

Pssm-ID: 473308  Cd Length: 177  Bit Score: 54.44  E-value: 9.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735194839 212 GLSKTNSNVGPFYPQLIIEFIVNLPFEFNDPSspdYQTIHIKGSMFKISPAIINRFLGNSVVSSSQSSHISNDDLAFVLS 291
Cdd:pfam20167   4 GWEKLTTYPGPANPTLVREFYANAPELVPDDK---VYSSYVRGKRIDFSPETINEFLEICQFGLYLEEGKTLEDLARVLC 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1735194839 292 SGTlSVWPVNGTFGVKFPIPLPHFFSSLLIH-----LNFDILTLNDA 333
Cdd:pfam20167  81 VPG-GRWLRNLGIRKADLNPAAKYWFGFIRSnlmpsSNESDLTHDRA 126
 
Name Accession Description Interval E-value
Transposase_32 pfam20167
Putative plant transposon protein; This entry represents a likely transposon related protein ...
 212-333 9.04e-09

Putative plant transposon protein; This entry represents a likely transposon related protein from plants. This entry appears related to ORF1 from the ATHILA group of Arabidopsis thaliana retrotransposons pfam03078.


Pssm-ID: 466318  Cd Length: 177  Bit Score: 54.44  E-value: 9.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735194839 212 GLSKTNSNVGPFYPQLIIEFIVNLPFEFNDPSspdYQTIHIKGSMFKISPAIINRFLGNSVVSSSQSSHISNDDLAFVLS 291
Cdd:pfam20167   4 GWEKLTTYPGPANPTLVREFYANAPELVPDDK---VYSSYVRGKRIDFSPETINEFLEICQFGLYLEEGKTLEDLARVLC 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1735194839 292 SGTlSVWPVNGTFGVKFPIPLPHFFSSLLIH-----LNFDILTLNDA 333
Cdd:pfam20167  81 VPG-GRWLRNLGIRKADLNPAAKYWFGFIRSnlmpsSNESDLTHDRA 126
 
Name Accession Description Interval E-value
Transposase_32 pfam20167
Putative plant transposon protein; This entry represents a likely transposon related protein ...
 212-333 9.04e-09

Putative plant transposon protein; This entry represents a likely transposon related protein from plants. This entry appears related to ORF1 from the ATHILA group of Arabidopsis thaliana retrotransposons pfam03078.


Pssm-ID: 466318  Cd Length: 177  Bit Score: 54.44  E-value: 9.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1735194839 212 GLSKTNSNVGPFYPQLIIEFIVNLPFEFNDPSspdYQTIHIKGSMFKISPAIINRFLGNSVVSSSQSSHISNDDLAFVLS 291
Cdd:pfam20167   4 GWEKLTTYPGPANPTLVREFYANAPELVPDDK---VYSSYVRGKRIDFSPETINEFLEICQFGLYLEEGKTLEDLARVLC 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1735194839 292 SGTlSVWPVNGTFGVKFPIPLPHFFSSLLIH-----LNFDILTLNDA 333
Cdd:pfam20167  81 VPG-GRWLRNLGIRKADLNPAAKYWFGFIRSnlmpsSNESDLTHDRA 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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