NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2276111383|dbj|GKM07518|]
View 

membrane protein [Klebsiella variicola]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF2754 super family cl12529
Protein of unknown function (DUF2754); This family of proteins with unknown function appear to ...
1-65 1.69e-35

Protein of unknown function (DUF2754); This family of proteins with unknown function appear to be restricted to Enterobacteriaceae.


The actual alignment was detected with superfamily member pfam10953:

Pssm-ID: 402504  Cd Length: 70  Bit Score: 113.96  E-value: 1.69e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2276111383  1 MKLTDKIRRDWHYYAVALGLIFILNGVVGLLGFETQGWQSYAVGLVTWVISFWAAGLVIRRRPAE 65
Cdd:pfam10953  1 MKLPDKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQSYAVGLITWVISFWIAGFIIRRRDEE 65
 
Name Accession Description Interval E-value
DUF2754 pfam10953
Protein of unknown function (DUF2754); This family of proteins with unknown function appear to ...
1-65 1.69e-35

Protein of unknown function (DUF2754); This family of proteins with unknown function appear to be restricted to Enterobacteriaceae.


Pssm-ID: 402504  Cd Length: 70  Bit Score: 113.96  E-value: 1.69e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2276111383  1 MKLTDKIRRDWHYYAVALGLIFILNGVVGLLGFETQGWQSYAVGLVTWVISFWAAGLVIRRRPAE 65
Cdd:pfam10953  1 MKLPDKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQSYAVGLITWVISFWIAGFIIRRRDEE 65
 
Name Accession Description Interval E-value
DUF2754 pfam10953
Protein of unknown function (DUF2754); This family of proteins with unknown function appear to ...
1-65 1.69e-35

Protein of unknown function (DUF2754); This family of proteins with unknown function appear to be restricted to Enterobacteriaceae.


Pssm-ID: 402504  Cd Length: 70  Bit Score: 113.96  E-value: 1.69e-35
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2276111383  1 MKLTDKIRRDWHYYAVALGLIFILNGVVGLLGFETQGWQSYAVGLVTWVISFWAAGLVIRRRPAE 65
Cdd:pfam10953  1 MKLPDKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQSYAVGLITWVISFWIAGFIIRRRDEE 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH