NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1519294390|dbj|GCD25338|]
View 

fimbrial subunit type 1 precursor [Klebsiella pneumoniae]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
1-182 7.65e-42

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15194:

Pssm-ID: 445401  Cd Length: 185  Bit Score: 138.55  E-value: 7.65e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   1 MKIKTLAMIVVSALSLSSTAALADTTT--VNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFN 78
Cdd:PRK15194    1 MKLRFISSAIASLLFVAGAAYAADPTPvsVDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  79 IQLDDCDTTVATKASVAFAGTAiDSSNTTVLALQNSAAG-SATNVGVQILDNTGTPLALDGATFSAATTLNDGPNIIPFQ 157
Cdd:PRK15194   81 IQLNDCDPVVAATAAVAFSGQA-DATNDNLLAVASSTNTtTATGVGIEILDNTSSILKPDGATFSANQNLIEGTNTLHFS 159

                         170       180
                  ....*....|....*....|....*.
gi 1519294390 158 ARYYATGAATAG-IANADATFKVQYE 182
Cdd:PRK15194  160 ARYKATGTSASAgQANADATFIMKYE 185
 
Name Accession Description Interval E-value
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
1-182 7.65e-42

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 138.55  E-value: 7.65e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   1 MKIKTLAMIVVSALSLSSTAALADTTT--VNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFN 78
Cdd:PRK15194    1 MKLRFISSAIASLLFVAGAAYAADPTPvsVDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  79 IQLDDCDTTVATKASVAFAGTAiDSSNTTVLALQNSAAG-SATNVGVQILDNTGTPLALDGATFSAATTLNDGPNIIPFQ 157
Cdd:PRK15194   81 IQLNDCDPVVAATAAVAFSGQA-DATNDNLLAVASSTNTtTATGVGIEILDNTSSILKPDGATFSANQNLIEGTNTLHFS 159

                         170       180
                  ....*....|....*....|....*.
gi 1519294390 158 ARYYATGAATAG-IANADATFKVQYE 182
Cdd:PRK15194  160 ARYKATGTSASAgQANADATFIMKYE 185
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
3-182 4.55e-36

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 123.61  E-value: 4.55e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   3 IKTLAMIVVSALSLSSTAALAdtttvNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQLD 82
Cdd:COG3539     1 MKKLLLALLLALALSAAAAAA-----ADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLT 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  83 DCDTTVATKASVAFAGTAiDSSNTTVLAlqNSAAGSATNVGVQILDNTGTPLALDGATfSAATTLNDGPNIIPFQARYYA 162
Cdd:COG3539    76 NCDAGTSNSVKVTFTGTA-DSANPGLLA--NTGSGGASGVGIQLLDSDGTPIPLGTPS-SAVTLTSNGSATLPFYARYVA 151

                         170       180
                  ....*....|....*....|.
gi 1519294390 163 TGAATAG-IANADATFKVQYE 182
Cdd:COG3539   152 TGATVTAgSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
33-182 8.28e-17

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 73.24  E-value: 8.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  33 VHFKGEV--VNAACAVDAGSIDqTVQLGQVRSAKLATAGSTSSAVGFNIQLDDCDTTVATKASVAFAGTAIDSSNTTVLA 110
Cdd:pfam00419   1 INFTGTVtrVPATCKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITLECSSGSSAVKVTVGLFGTADASSPNLLLT 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1519294390 111 lqNSAAGSATNVGVQILDNTGTPLALDGATFSAATTLNDG-PNIIPFQARYYATGAATAGI--ANADATFKVQYE 182
Cdd:pfam00419  80 --GNGAGAATGVGIRLYDANGGALPPNNGTSSIPVSATAAvATGITFTASLVATTGGTPTAgdFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
1-182 7.65e-42

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 138.55  E-value: 7.65e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   1 MKIKTLAMIVVSALSLSSTAALADTTT--VNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFN 78
Cdd:PRK15194    1 MKLRFISSAIASLLFVAGAAYAADPTPvsVDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  79 IQLDDCDTTVATKASVAFAGTAiDSSNTTVLALQNSAAG-SATNVGVQILDNTGTPLALDGATFSAATTLNDGPNIIPFQ 157
Cdd:PRK15194   81 IQLNDCDPVVAATAAVAFSGQA-DATNDNLLAVASSTNTtTATGVGIEILDNTSSILKPDGATFSANQNLIEGTNTLHFS 159

                         170       180
                  ....*....|....*....|....*.
gi 1519294390 158 ARYYATGAATAG-IANADATFKVQYE 182
Cdd:PRK15194  160 ARYKATGTSASAgQANADATFIMKYE 185
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
3-182 4.55e-36

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 123.61  E-value: 4.55e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   3 IKTLAMIVVSALSLSSTAALAdtttvNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQLD 82
Cdd:COG3539     1 MKKLLLALLLALALSAAAAAA-----ADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLT 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  83 DCDTTVATKASVAFAGTAiDSSNTTVLAlqNSAAGSATNVGVQILDNTGTPLALDGATfSAATTLNDGPNIIPFQARYYA 162
Cdd:COG3539    76 NCDAGTSNSVKVTFTGTA-DSANPGLLA--NTGSGGASGVGIQLLDSDGTPIPLGTPS-SAVTLTSNGSATLPFYARYVA 151

                         170       180
                  ....*....|....*....|.
gi 1519294390 163 TGAATAG-IANADATFKVQYE 182
Cdd:COG3539   152 TGATVTAgSFNATATFTIDYQ 172
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 11-182 1.39e-23

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 91.57  E-value: 1.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  11 VSALSLSSTAALADTTtvNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQLDDCDTTVAT 90
Cdd:PRK15209    8 LSALALTSTSVFAAES--GDGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITTNK 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  91 KASVAFAGTAiDSSNTTVLALqNSAAGSATNVGVQILDNTGTPLALDGATFSaaTTLNDGPNIIPFQARYYATGAATAGI 170
Cdd:PRK15209   86 KVNVSFNGVG-DADDSTLVSV-STEAGAATGVGIGIYDNANTLVELNTGKST--TTLAAGQTVLYFTANYVSTKDTVTTG 161

                         170
                  ....*....|...
gi 1519294390 171 -ANADATFKVQYE 182
Cdd:PRK15209  162 yGNAEVDFNLSYE 174
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 4-181 1.79e-21

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 86.41  E-value: 1.79e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   4 KTLAMIVVSALSLSS--TAALADTTTVNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAG-STSSAVGFNIQ 80
Cdd:PRK15187    3 KPVLALMVSAIAFGGmlSTAQADTTTVTGGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGmVANQKEDFTIK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  81 LDDCDTTVATKASVAFAGTaiDSSNTTVLALQNSAAGSATNVGVQILDNTGTplALDGATFSAATTLNDGPNIIPFQARY 160
Cdd:PRK15187   83 LEDCDTQTSQNAAVIFNGQ--QDANQPGSLANTAGAGSATNVALQLYGPDGQ--ALNIGESSSTVTLNDGENVIPLSVDY 158

                         170       180
                  ....*....|....*....|.
gi 1519294390 161 YATGAATAGIANADATFKVQY 181
Cdd:PRK15187  159 IATGTATAGNVTATATFSMVY 179
Fimbrial pfam00419
Fimbrial protein;
33-182 8.28e-17

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 73.24  E-value: 8.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  33 VHFKGEV--VNAACAVDAGSIDqTVQLGQVRSAKLATAGSTSSAVGFNIQLDDCDTTVATKASVAFAGTAIDSSNTTVLA 110
Cdd:pfam00419   1 INFTGTVtrVPATCKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITLECSSGSSAVKVTVGLFGTADASSPNLLLT 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1519294390 111 lqNSAAGSATNVGVQILDNTGTPLALDGATFSAATTLNDG-PNIIPFQARYYATGAATAGI--ANADATFKVQYE 182
Cdd:pfam00419  80 --GNGAGAATGVGIRLYDANGGALPPNNGTSSIPVSATAAvATGITFTASLVATTGGTPTAgdFNATATIVVDYQ 152
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 1-181 4.68e-16

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 72.05  E-value: 4.68e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   1 MKIKTLAmIVVSALSLSStAALADTTtvNGGTVHFKGEVVNAACAVDAGSIDQTVQlgQVRSAKLATAGSTSSAVGFNIQ 80
Cdd:PRK15300    3 LSLKTLT-VALAAITLSP-AALADTA--KDGTVHITGLIKQNACTVKTDSVEVTLQ--EEFASLFTAAGQTAGDTDFTIE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  81 LDDCDTTVATKASVAFAGTaIDSSNTTVLALQnsaaGSATNVGVQILDNTGTPLAL-DGATFSAATTLNDGPNI----IP 155
Cdd:PRK15300   77 LENCDANVYSSVQARFEGT-LDGTDATILKNE----DDAENIGVQILDKTSTPMTFnDLQAWSAAVALPTAEGVtelsMP 151

                         170       180
                  ....*....|....*....|....*..
gi 1519294390 156 FQARYYATGA-ATAGIANADATFKVQY 181
Cdd:PRK15300  152 FTARYIATAVpVKSGTVDATATFYLQY 178
PRK09733 PRK09733
fimbrial-like protein;
8-182 1.05e-14

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 68.44  E-value: 1.05e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   8 MIVVSALSLSSTAALADTTTVNGGT--VHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLaTAGSTSSAVGFNIQLDDC- 84
Cdd:PRK09733    1 AFKKSLLVAGVAMILSNNVFADEGHgiVKFKGEVISAPCSIKPGDEDLTVNLGEVADTVL-KSDQKSLAEPFTIHLQDCm 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  85 ---DTTVATKASVAFAGTAIDSSNTTVLA-LQNSAAGSATNVGVQILDNT------GTPLALDGATFSAATTLNdgpnii 154
Cdd:PRK09733   80 lsqGGTTYSKAKVTFTTANTMTGQSDLLKnTKETEIGGATGVGVRILDSQsgevtlGTPVVITFNNTNSYQELN------ 153

                         170       180
                  ....*....|....*....|....*....
gi 1519294390 155 pFQARYYATGAATA-GIANADATFKVQYE 182
Cdd:PRK09733  154 -FKARMESPSKDATpGNVYAQADYKIAYE 181
PRK09934 PRK09934
fimbriae assembly protein;
8-181 4.60e-14

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 66.45  E-value: 4.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   8 MIVVSALSLSSTAALADTT--TVNggtVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQLDDCD 85
Cdd:PRK09934    5 FFACFCGLLWSPLSWAADPlgEIN---IELHGNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEGCP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  86 ttvATKASVAFAGTaiDSSNTTVLALQNSAagSATNVGVQILDNTGTPLALDGATFSAATTLNdGPNIIPFQARYYATGA 165
Cdd:PRK09934   82 ---PGSASITFTGT--PASDTNLLALDDPA--MAQTVAIEIRDSDRSRLALGQASPTVEVDAN-GNATLNFYANYIALAD 153

                         170
                  ....*....|....*..
gi 1519294390 166 ATA-GIANADATFKVQY 181
Cdd:PRK09934  154 GVQpGVAKADATFMINY 170
lpfA PRK15289
fimbrial protein; Provisional
 9-182 1.13e-13

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 65.75  E-value: 1.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   9 IVVSALSLSSTAaLADTTTVNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQLDDCDTTV 88
Cdd:PRK15289    5 IIGGAFTLASLM-LAGHALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  89 aTKASVAFAGTAIDSSN-----TTVLALQNS-------AAGSATNVGVQIL---DNTGTPLALDgatfSAATTLN-DGPN 152
Cdd:PRK15289   84 -TQAAVRFDGTEAPGGDgdlkvGTPLTAGNPgdftgtgQAIAATGVGIRIFnqsDNSQVKLYND----SAYTAIDaEGKA 158

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1519294390 153 IIPFQARYYATGAATAG-IANADATFKVQYE 182
Cdd:PRK15289  159 EMKFIARYVATNATVTAgTANADSQFTVEYK 189
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
19-129 2.86e-12

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 61.80  E-value: 2.86e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  19 TAALADTTTVNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSS-AVGFNIQLDDCDTTVATKASVAFA 97
Cdd:PRK15200   15 SPVIAQPVMVESGRVHLRGQLVNGGCAVATESQDLRVLMGQYRTNAFTGPGSFAPvSVPFSLRLISCSAEVWRHVGIAFA 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1519294390  98 GTAIDSSNTTVLALQNSAAGSAtnVGVQILDN 129
Cdd:PRK15200   95 GVTPAEDPHVFLASGEGIGNAG--IGLALFDD 124
PRK15205 PRK15205
long polar fimbrial protein LpfE; Provisional
 14-182 3.97e-11

long polar fimbrial protein LpfE; Provisional


Pssm-ID: 237923  Cd Length: 176  Bit Score: 58.71  E-value: 3.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  14 LSLSSTAALADTTTVNGGTVHFKGEVVNAACAVDAGSIDqtVQLGQVRSAKLATAGSTSSAVGFNIQLDDCDTtvATKAS 93
Cdd:PRK15205   13 LLLTASGMAAPTDLGPAGDIHFTITIKAKACELEKDSLE--VDMGTMVLQKPVKVGTELNQKNFSIGLKDCDG--ISKAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  94 VAFAGTAiDSSNTTVLALQnsaAGSATNVGVQILDNTGTPLALDGATFSAA--TTLNDGPNIIPFQARYYATGAATAG-I 170
Cdd:PRK15205   89 VTMDGSP-DPDDPSLFALD---AGGATGVALKIKTSKGTQQYPKSTDGTPVewAINGDGTTQLNYIASYVPVNADATVgT 164

                         170
                  ....*....|..
gi 1519294390 171 ANADATFKVQYE 182
Cdd:PRK15205  165 ANATVNFSVTYE 176
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 1-182 1.36e-09

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 54.70  E-value: 1.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   1 MKIKTLAMIVVSALSLSSTAALADTTTVNggtVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQ 80
Cdd:PRK15190    1 MNRSHCALFAMGLMLCPQINASADDLAYN---LEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNIN 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  81 LDDCDTTVaTKASVAFAGTAiDSSNTTVLALQNSAAGS----ATNVGVQILDNTGTPLALDGATfSAATTLNDGPNIIPF 156
Cdd:PRK15190   78 LKNCSRGI-AGAKIWFTGEP-DPDNPALLAITDTGMGSgnmlASGVGVEILNDDQDTISINNAD-SVVYPLKAGRNTLSF 154

                         170       180
                  ....*....|....*....|....*...
gi 1519294390 157 QARyYATGAATAGIANADAT--FKVQYE 182
Cdd:PRK15190  155 YIR-YKSTRPTVTSGNATAVmyFDMQYE 181
PRK15210 PRK15210
fimbrial protein;
1-181 2.44e-09

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 54.32  E-value: 2.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   1 MKIKTLAMIVVSALSLSSTAALADTTTVNG----GTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVG 76
Cdd:PRK15210    1 MRNKIILAMAAAGMMYGASVFAADTTPTAGpfgsGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  77 FNIQLDDC-----DTTVA------TKASVAFAGTAIDSSNTTVlalqnsAAGSATNVGVQILDNTGTPLALDGATF--SA 143
Cdd:PRK15210   81 FTIHLQNCafdpnIPDTAgsagkmSKVTVSFSGTANTSKKAYT------TSGSAQHVGVQLLKSDNTSIIEPNTPMpdGD 154

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1519294390 144 ATTLNDGPNIIPFQARYYATGAATA-GIANADATFKVQY 181
Cdd:PRK15210  155 AQQLQAGNNELNFFARLIALDNGVTpGDFNASVTYTLKY 193
PRK15293 PRK15293
fimbrial protein SthD;
7-161 3.59e-09

fimbrial protein SthD;


Pssm-ID: 185193  Cd Length: 185  Bit Score: 53.53  E-value: 3.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   7 AMIVVSALSLSSTAALADTTTVNGGTVHFKGEVVNAACAVDAGSidqTVQLGQVRSAKLATAGSTSSAVGFNIQLDDCDT 86
Cdd:PRK15293   11 ALLTFTGLALWSPSISAAYNTADAVDINVTGLIYADPCTVTVPD---TLSLGQYARADIAVAGGNTATIPFTIKMTNCPA 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519294390  87 TVaTKASVAFAGTAIDSSNTTVLALQNSAAGSATNVGVQILDNTGTPLA--LDGATFSAATTLNDGPNIIPFQARYY 161
Cdd:PRK15293   88 TT-TKAAISFNGVPYPDPNYASAIYANSAANPAQDLGLQLFNLDGKSLVnlANNVTYTVDINSNTHEANLPVAARMY 163
PRK15260 PRK15260
fimbrial protein SteF; Provisional
 21-182 3.07e-07

fimbrial protein SteF; Provisional


Pssm-ID: 185168  Cd Length: 178  Bit Score: 48.15  E-value: 3.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  21 ALADTTTVNGGTVHFKGEVVNAAC--AVDAGSIdQTVQLGQVRSAKLATAGSTSSaVGFNIQLDDCDTTVATKASVAFAG 98
Cdd:PRK15260   19 AVCNTLPAATPNVHYSGKLVAGACnlVVDNDTM-ATVDFHTIGSDNFDASGQTTP-VPFTLSLQDCKTALANGVLVTFQG 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  99 TAiDSSNTTVLALQNSAAGSATNVGVQILDNtgTPLALDgATFSAATTLNDGPNIIPFQARY--YATGAATAGIANADAT 176
Cdd:PRK15260   97 VE-DSTLPGLLALEPSSEASGFAIGVETAAQ--QPVSIN-ATVGTAFVLKEGITTINLQARLqkYAGEEVMPGEFSGSAT 172


                  ....*.
gi 1519294390 177 FKVQYE 182
Cdd:PRK15260  173 VSFEYQ 178
PRK15283 PRK15283
fimbrial major subunit StfA;
3-148 4.97e-07

fimbrial major subunit StfA;


Pssm-ID: 185183  Cd Length: 186  Bit Score: 47.84  E-value: 4.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   3 IKTLAMIVVSALSLSSTAALADTTTVNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLaTAGSTSSAVGFNIQLD 82
Cdd:PRK15283    1 MNTAVKAAVAAALVMGVSSFANAAGSNTGTVTFTGTIEDSPCSIVVGDEHQTVNLGHIGTGSL-MGGKESSKVDFHIGLE 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519294390  83 DCDTTVATKASVAFAGTAIDSS-NTTVLALQNSAAGSATNVGVQILDNTGTPLALdGATFSAATTLN 148
Cdd:PRK15283   80 NCAFTTEKEASTVFSAIGNESSaNPGSVALMRIGGGEMAGSSIVIGNHLGSAIKL-GDAYSENLTMN 145
PRK15296 PRK15296
fimbrial protein SthA;
16-126 6.89e-07

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 47.01  E-value: 6.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  16 LSSTAALADTTTVNGGTVHFKGEVVNAACAVDA-GSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQLDDC---DTTVATK 91
Cdd:PRK15296    9 LAMLTAVASTPVFAQNTITFNGKIYDQACTVQVnGSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCpeaGTGVPTQ 88

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1519294390  92 ASVAFAGTAIDSSNTTVLALQNSAAGSATNVGVQI 126
Cdd:PRK15296   89 AMFRFHGATDDSNPTYFKNADEGSETGAAGVGISI 123
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 23-182 4.48e-06

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 44.71  E-value: 4.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  23 ADTTTVNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTSSAVGFNIQLDDCDTTvATKASVAFAGTAiD 102
Cdd:PRK15191   15 ASGVQAHDGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGST-ASGVTVSFSGAA-D 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390 103 SSNTTVLALqNSAAGSATNVGVQILDNTGTPLALDGATFSAATTLNDGPNIIPFQARYYATGAATAGI-ANADATFKVQY 181
Cdd:PRK15191   93 SRNTDLLAL-TAGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGAVTPGdANASATFILAY 171


                  .
gi 1519294390 182 E 182
Cdd:PRK15191  172 E 172
PRK15261 PRK15261
fimbrial protein SteA; Provisional
 1-154 6.60e-04

fimbrial protein SteA; Provisional


Pssm-ID: 185169  Cd Length: 195  Bit Score: 38.99  E-value: 6.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390   1 MKIKTLAMIVVSALSLSSTAALADTTTVNGGTVHFKGEVVNAACAVDAGSIDQTVQLGQVRSAKLATAGSTS--SAVGFN 78
Cdd:PRK15261    1 MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTinNARTFH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519294390  79 IQLDDCDTTVATKASVAF---AGTAIDSSNTTVLAL-QNSAAGSATNVGVQILDNTGTPLALdGATFSAATTLNDGPNII 154
Cdd:PRK15261   81 IDLEGCTWATEKNMNVVFttgSGTTAATGATDNLALmKTDGTGAISNVSLAIGDAGKNNIKL-GDTYTQAIADLDGDTIL 159
CpxP COG3678
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, ...
 1-37 8.77e-03

Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442894 [Multi-domain]  Cd Length: 141  Bit Score: 34.96  E-value: 8.77e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1519294390   1 MKIKTLAMIVVSALSLSSTAALADTTTVNGGTVHFKG 37
Cdd:COG3678     1 MKLKLLALLLALALALGAASAFAAGPPGGPRGGRGLR 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH