|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
42-593 |
0e+00 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 874.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 42 DWAMHGLDPGETRFSPLAGIDAANVARLGVAWSADFEarSLRGVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDP 121
Cdd:cd10279 2 NWLSYGRDYDEQRFSPLTQINRSNVGQLGLAWYFDLD--TNRGQEATPLVVDGVMYVSGPWSVVYALDARTGKLLWQYDP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 122 HVDGATARRGCCDVVNRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITGAPRIVKNRVIIGNGGAEY 201
Cdd:cd10279 80 EVDRESGRKACCDVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 202 GVRGYVTAYDVATGRQAWRFYTVPGDPAKGFENKA-MAMAAGTWAGEWWKVGGGGTAWDSMAYDPELDLLYIGVGNGGPW 280
Cdd:cd10279 160 GVRGYVSAYDAETGKLVWRFYTVPGNPAKPFEHASlEAAAATWWTGEWWRTGGGGTVWDSITYDPELDLLYIGTGNGSPW 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 281 DRTVRSAGKGDNLFVSSIVAIRPETGEYVWHFQEVPGDEWDYTATQHMILADLDIGGQRRKVLMQAPKNGYFYVLDRATG 360
Cdd:cd10279 240 NRKVRSPGGGDNLFLSSIVALDADTGRYKWHYQTTPGDTWDYTATQPIILADLEIDGKPRKVLMHAPKNGFFYVLDRATG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 361 QFISGTPYVPLNWSKGLDPRTGRPDIVPAARYAESGaaWLGLPSPAGGHSWQPMSYDPSRRLVFLPTAEMPYGYVsAKPG 440
Cdd:cd10279 320 KLLSAEPFVPVNWATGIDLKTGRPIENPEARYTKGP--KLVFPGPLGAHNWHPMSYNPDTGLVYIPAQEIPAVYE-DDPG 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 441 SFAYDPRGWNTGQDPaaSSMPEDPKVRAQIRAMMKGALVAWDPVAGRRVWSVPMPLPWNGGVLSTAGGLVFQGNGTGEFA 520
Cdd:cd10279 397 DFGYNPLGWNTGITP--DATPPPAAAKRALRKATRGRLVAWDPVTQKAAWRVEHPGPWNGGVLATAGNLVFQGTADGELA 474
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 809275670 521 AYAADSGRKLWSVNLGSGIVAAPVTYRIRGVQYVSVAVGWGGILPLNMGEALKDAVGPRVNRIVTFRLDGKAP 593
Cdd:cd10279 475 AYDARTGEKLWSFDTGSGIVAAPMTYSVDGEQYVAVLAGWGGAGALSGGPPGAAGKVQNPGRLLVFKLGGKAV 547
|
|
| PQQ_enz_alc_DH |
TIGR03075 |
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic ... |
24-562 |
0e+00 |
|
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Pssm-ID: 274419 [Multi-domain] Cd Length: 527 Bit Score: 674.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 24 APVNANARASTETASADT-DWAMHGLDPGETRFSPLAGIDAANVARLGVAWSADFEarSLRGVEATPIVVDGVMYVSGPW 102
Cdd:TIGR03075 1 AAAAAVTNEDLLNDAKDPsDWLTYGGGYAGQRYSPLDQINTDNVKKLQPAWTFSLG--KQRGQESQPLVVDGVMYVTTSY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 103 SVVMALDARTGRVLWRYDPHVDGATARRGCCDVVNRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTIT 182
Cdd:TIGR03075 79 SRVYALDAKTGKILWKYDPKLPDDIIPVMCCDVVNRGAALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTIT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 183 GAPRIVKNRVIIGNGGAEYGVRGYVTAYDVATGRQAWRFYTVPGDP---AKGFENKAMAMAAGTWAGEWWKVgGGGTAWD 259
Cdd:TIGR03075 159 AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMgylKKTGKPVGGDPGAKTWPGDAWKT-GGGATWG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 260 SMAYDPELDLLYIGVGNGGPWDRTVRsagKGDNLFVSSIVAIRPETGEYVWHFQEVPGDEWDYTATQHMILADLDIGGQR 339
Cdd:TIGR03075 238 TGSYDPETNLIYFGTGNPAPWNSHLR---PGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKP 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 340 RKVLMQAPKNGYFYVLDRATGQFISGTPYVP-LNWSKGLDPRTGRPDIVPAARYA--ESGAAWLGLPSPAGGHSWQPMSY 416
Cdd:TIGR03075 315 RKLLAHADRNGFFYVLDRTNGKLLSAEPFVDkVNWATGVDLKTGRPIEVPEARSTdgKKGKPVEVCPGFLGGKNWQPMAY 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 417 DPSRRLVFLPTAEMPYGYvsaKPGSFAYDPRGWNTGQDPAASSMPEDpkvraqiramMKGALVAWDPVAGRRVWSVPMPL 496
Cdd:TIGR03075 395 SPKTGLFYVPANHVCMDY---WPEKVSYKKGAAYLGAGFTIKPPPDD----------HIGSLIAWDPITGKIVWEHKEDF 461
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 809275670 497 PWNGGVLSTAGGLVFQGNGTGEFAAYAADSGRKLWSVNLGSGIVAAPVTYRIRGVQYVSVAVGWGG 562
Cdd:TIGR03075 462 PLWGGVLATAGDLVFTGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSGWGG 527
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
39-589 |
0e+00 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 642.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 39 ADTDWAMHGLDPGETRFSPLAGIDAANVARLGVAWSADFEARSLRGVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWR 118
Cdd:COG4993 1 DPGDWLAYGGDYAGQRYSPLDQINPDNVKKLKVAWTFSTGDLPERGHEATPLVVDGVLYVCTPHNRVFALDAATGKELWR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 119 YDPHVDGATArrgCCDVVNRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITGAPRIVKNRVIIGNGG 198
Cdd:COG4993 81 YDPKLPDDAA---CCDVVNRGVAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYTITSAPLVVKDKVIVGGSG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 199 AEYGVRGYVTAYDVATGRQAWRFYTVPGDPAKGFEnkamamaagTW-AGEWWKVgGGGTAWDSMAYDPELDLLYIGVGNG 277
Cdd:COG4993 158 GEFGPRGVVRAYDARTGKLVWRFDTIPDPGEPGAE---------TWpPGDTWKR-GGGNVWGTMSYDPELGLVYLPTGNP 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 278 GP-WDRTVRsagKGDNLFVSSIVAIRPETGEYVWHFQEVPGDEWDYTATQHMILADLDIGGQRRKVLMQAPKNGYFYVLD 356
Cdd:COG4993 228 APdWNGGQR---PGDNLYSSSIVALDADTGELKWHYQTVPHDLWDYDGPNEPILVDLPVDGKTRKALVQATKNGFIYVLD 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 357 RATGQFISGTPYV-PLNWSKGLDPRTGRPDIVPaarYAESGAAWLGLPSPAGGHSWQPMSYDPSRRLVFLPTAEMPYGYV 435
Cdd:COG4993 305 RETGEPLVTQPFVkPPNWATEIDMWGATPIQTP---PSLDGKTTLICPGALGGKNWGPAAYDPETGLLYVPANELCMDYE 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 436 SAKPgsfAYDPRGWNTGQDPAASSMPEDPkvraqirammKGALVAWDPVAGRRVWSVPMPLPWNGGVLSTAGGLVFQGNG 515
Cdd:COG4993 382 LVPR---EYQAGAPYLGATLTMYPCPAPP----------WGTLTAIDLNTGKIVWQVPLGFPNWGGPLATAGGLVFIGTL 448
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 809275670 516 TGEFAAYAADSGRKLWSVNLGSGIVAAPVTYRIRGVQYVSVAVGWGGILPLNMGEALKDAVgprvnriVTFRLD 589
Cdd:COG4993 449 DGYLRAFDAKTGKELWKFRLPSGGQATPMTYEVDGKQYVAVAAGGGGWLGLGLYTPQGDYL-------IAFALP 515
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
35-575 |
0e+00 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 550.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 35 ETASADTDWAMHGLDPGETRFSPLAGIDAANVARLGVAWSADFEARSlRGVEATPIVVDGVMYVSGPWSVVMALDARTGR 114
Cdd:cd10277 3 NDAKETGNWLTYGRGYNGQRYSPLKQINTDNVKNLVPAWSFSFGGKQ-RGQESQPIVNDGVMYVTTSYNRVFAIDAKTGK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 115 VLWRYDPHVDGATarRGCCDVVNRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITGAPRIVKNRVII 194
Cdd:cd10277 82 ELWKYKHRLPEDI--RPCCDVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVKGKVIV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 195 GNGGAEYGVRGYVTAYDVATGRQAWRFYTVPGDPAKGFENkamamaagTWAGEWWKVGGGgTAWDSMAYDPELDLLYIGV 274
Cdd:cd10277 160 GVSGGEFGVRGFIAALDAETGKEVWRTYTVPGPGEPGSTD--------TWPGDAWKTGGG-ATWLTGTYDPETNLLYWGV 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 275 GNGGPWDRTVRsagKGDNLFVSSIVAIRPETGEYVWHFQEVPGDEWDYTATQHMILADLDIGGQRRKVLMQAPKNGYFYV 354
Cdd:cd10277 231 GNPAPWNGDLR---PGDNLYTSSVLALDPDTGKIKWHYQYTPNDTWDYDGVNEPVLFDYTKNGKPVKALVHADRNGFFYV 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 355 LDRATGQFISGTPYVPLNWSKGLDPRTGRPDIVPAARYAESGAAWLGLPSPAGGHSWQPMSYDPSRRLVFLPTAEMPYGY 434
Cdd:cd10277 308 LDRTNGKLIWATPFVKKITWASIDLKTGRPIYDEDKVPPKKGKTVDFCPSFLGGKNWPPMAYSPDTGLFYVPANHWCMDL 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 435 VSAKPgsfAYDPRGWNTGQDPAASSMPEDpkvraqiramMKGALVAWDPVAGRRVWSVPMPLPWNGGVLSTAGGLVFQGN 514
Cdd:cd10277 388 TGEPV---SYKKGAAYLGAGFTIKPPFED----------HIGELQAIDPTTGKKVWEHKTPLPLWGGVLTTAGGLVFTGT 454
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 809275670 515 GTGEFAAYAADSGRKLWSVNLGSGIVAAPVTYRIRGVQYVSVAVGWGGILPLNMGEALKDA 575
Cdd:cd10277 455 PDGYFRAFDAKTGKELWEFQTGSGIIGPPVTWEVDGKQYVAVLSGWGGAAPLWGGDMAKLL 515
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
43-574 |
4.60e-166 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 488.38 E-value: 4.60e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 43 WAMHGLDPGETRFSPLAGIDAANVARLGVAWSadFEARSLRGVEATPIVVDGVMYVSGPW-SVVMALD-ARTGRVLWRYD 120
Cdd:cd10278 1 WVMPGKDYANTRYSPLAQINKDNVKNLKVAWT--FSTGVLRGHEGAPLVVGDTMYVVTPFpNNVYALDlNDPGKILWKYK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 121 PHVDGATARRGCCDVVNRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITGAPRIVKNRVIIGNGGAE 200
Cdd:cd10278 79 PKQDPSAVAVACCDVVNRGLAYADGKIFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGETLTMAPLVVKDKVIVGISGGE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 201 YGVRGYVTAYDVATGRQAWRFYTVPGDP----AKGFeNKAMA------MAAGTWAGEWWKVgGGGTAWDSMAYDPELDLL 270
Cdd:cd10278 159 FGVRGYVTAYDLKTGKLVWRAYSTGPDKdvliGPDF-NPFNPhdggkdLGLSTWPGDAWKI-GGGTNWGWYSYDPKLNLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 271 YIGVGNGGPWDRTVRSagkGDNLFVSSIVAIRPETGEYVWHFQEVPGDEWDYTATQHMILADLDIGGQRRKVLMQAPKNG 350
Cdd:cd10278 237 YYGTGNPGPWNPTQRP---GDNKWSMTIFARDPDTGEAKWAYQMTPHDEWDYDGVNEMILVDQTVDGKKRKLLVHFDRNG 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 351 YFYVLDRATGQFISGTPYVPLNWSKGLDPRTGRPDIVPAARYAESGAAWLGLPSPAGGHSWQPMSYDPSRRLVFLPTAEM 430
Cdd:cd10278 314 FVYTLDRTTGELLSAEKFDPVNNWKGVDLKTGRPVKDPEKSTHMDHNVTDICPSAMGGKDQQPSSYSPKTGLFYVPTNHL 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 431 PYGYVSAKpgsfaydpRGWNTGQdP---AASSMPEDPKVraqiramMKGALVAWDPVAGRRVWSVPMPLPWNGGVLSTAG 507
Cdd:cd10278 394 CMDYEPFE--------VNYTAGQ-PyvgATLAMYPGPGG-------HMGQFKAWDPVTGKTKWEIKERFPVWSGTLATAG 457
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 809275670 508 GLVFQGNGTGEFAAYAADSGRKLWSVNLGSGIVAAPVTYRIRGVQYVSVAVGWGGILPLNMGEALKD 574
Cdd:cd10278 458 GLVFYGTLDGWFKAVDAKTGKLLWKFKLPSGIIGNPITYKHDGKQYVAVLSGVGGWAGVGVAAGLRD 524
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
63-571 |
4.02e-140 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 417.78 E-value: 4.02e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 63 AANVARLGVAWSADFEARSLRGVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDGATARRgCCDVVNRGVAY 142
Cdd:cd00216 1 ADNVFQLTPAWSFSTGDGGNRGSELTPIVVDGVMYATTSFSRVFALDADDGKEIWSYDPALKDGWFEA-CCDLVNRGVAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 143 ADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITGAPRIVKNRVIIGNGGAEYGVRGYVTAYDVATGRQAWRFY 222
Cdd:cd00216 80 WGGKVYIGVLDGRVYALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGVRGYLTAYDVATGEEKWRFY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 223 TVPGDPAKGFENKAMAMAAGTWAGE--WWKvGGGGTAWDSMAYDPELDLLYIGVGNGGPWDRTVRSAgKGDNLFVSSIVA 300
Cdd:cd00216 160 LVMPDPNLLPGKDSTVTDRNTPTGDehTWT-SGGGTGWSSAAYDAELNLIYVGGGNPTPWNWGGNRT-PGDNLYTSSIVA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 301 IRPETGEYVWHFQEVPGDEWDYTATQHMILADLDIGGQRRKVLMQAPKNGYFYVLDRATGQFISGTPYVplnwskgldpr 380
Cdd:cd00216 238 VNADTGEMKWQYQTTPHDAWDYDGDNTPVLADIKVKGKKVKVLFAPAKNGNFYVLDRRNGELVSARPLV----------- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 381 tgrpdivpaaryaesgaawlglpspagghswqPMSYDPSRRLVFLPtaemPYGYVSakpgsfaydprgwntgqdpaassm 460
Cdd:cd00216 307 --------------------------------PDSYDPDRELFYVP----ANGRIM------------------------ 326
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 461 pedpkvraqirammkgalvAWDPVAGRRVWSVPMPLPWNGGVLSTAGGLVFQGNGTGEFAAYAADSGRKLWSVNLGSGIV 540
Cdd:cd00216 327 -------------------ALDPVTGVVVWEKSELHPLLGGPLSTAGNLVFVGTSDGYLKAYNADTGEKLWQQKVPSGFQ 387
|
490 500 510
....*....|....*....|....*....|.
gi 809275670 541 AAPVTYRIRGVQYVSVAVGWGGILPLNMGEA 571
Cdd:cd00216 388 AEPVTYEVDGEQYVLIQAGGGGAFPLWGGMA 418
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
43-569 |
5.30e-98 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 314.51 E-value: 5.30e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 43 WAMHGLDPGETRFSPLAGIDAANVARLGVAW---SADFEARSLRG--VEATPIVVDGVMYVSGPWSVVMALDARTGRVLW 117
Cdd:cd10280 1 WPAYGGDPGGTRYSPLDQITPDNVGKLKVAWtyhTGDLPGPDGNEgtFEATPLKVGGTLYLCTPHNRVIALDAATGKELW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 118 RYDPHVDGATARRGccdVVNRGVAYADGK---------VFLGAFDGRLIALDAKTGREVWS------VQTTDRNQN---- 178
Cdd:cd10280 81 RFDPKAGADAAPGH---QTCRGVSYWEDGaaaaacarrIFFGTGDARLIALDARTGKPCPDfgdngvVDLREGLGRvkpg 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 179 -YTITGAPRIVKNRVIIG----NGGAEYGVRGYVTAYDVATGRQAWRFYTVPGDPAKGFEnkamamaagtWAGEWWKVGG 253
Cdd:cd10280 158 fYSSTSPPTVYGDLVIVGsavaDNQAVDAPSGVIRAFDVRTGKLVWAFDTIPPPGEAGPD----------TAGAWYTRGG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 254 GGtAWDSMAYDPELDLLYIGVGNGGP--W--DRtvrsagKGDNLFVSSIVAIRPETGEYVWHFQEVPGDEWDYTATQHMI 329
Cdd:cd10280 228 PN-VWAGMSADEKLGLVYLPTGSATPdfYggDR------PGDNLFANSLVALDAATGKRRWHFQTVHHDLWDYDLPAQPT 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 330 LADLDIGGQRRKVLMQAPKNGYFYVLDRATGQFISGTPYVPLnwSKG---------------LDPRTGRPDIVPA----- 389
Cdd:cd10280 301 LVDVPRDGKTVPAVAQPTKQGFVFVLDRRTGKPLWPVEERPV--PQGdvpgertsptqpfptLPPPFARQGLTEDdmwga 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 390 --------------ARY-------AESGAawLGLPSPAGGHSWQPMSYDPSRRLVFLPTAEMPYGY--VSAKPGSFAYDP 446
Cdd:cd10280 379 tpfdqlacriqfrsLRYeglftppSLDGT--LIFPGNDGGANWGGAAVDPERGILYVNSNRLPFVIqlVPRAPGDPAGVA 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 447 RGWNTGQDPAASSMPEDPKVRAQIRAMMK-----------GALVAWDPVAGRRVWSVP-----------MPLPW------ 498
Cdd:cd10280 457 GGGEGGGGGGGPSPQAGTPYGVGRGRFLSplglpcqappwGTLTAIDLNTGKILWQVPlgtvpdlgpkgIPLPIptgtpn 536
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 809275670 499 NGGVLSTAGGLVFQGnGTGE--FAAYAADSGRKLWSVNLGSGIVAAPVTYRIRGVQYVSVAVGWGGILPLNMG 569
Cdd:cd10280 537 LGGPVVTAGGLVFIA-ATQDnyLRAFDKATGKELWEARLPAGGQATPMTYEVDGKQYVVIAAGGHGSLGTKRG 608
|
|
| PQQ_membr_DH |
TIGR03074 |
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein ... |
5-572 |
5.42e-60 |
|
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Pssm-ID: 274418 [Multi-domain] Cd Length: 764 Bit Score: 215.64 E-value: 5.42e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 5 AILLTAICVSATALAAPKPAPVNAN------ARASTETASADTDWAMHGLDPGETRFSPLAGIDAANVARLGVAW---SA 75
Cdd:TIGR03074 94 AGVLAVAVLAALASMFTDPHPIVGAldtevpATAAAAPAVPAGDWAAYGRTQAGQRYSPLDQINPDNVGNLKVAWtyhTG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 76 DF-EARSLRGV--EATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHV-DGATARRGCCdvvnRGVAYADG------ 145
Cdd:TIGR03074 174 DLkTPDDPGEAtfQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLkTEADRQHQTC----RGVSYYDApaaaag 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 146 ------------KVFLGAFDGRLIALDAKTGREVWSVQT---TDRNQN--------YTITGAPRIVKNRVIIG----NGG 198
Cdd:TIGR03074 250 pagpaapadcarRIILPTSDARLIALDADTGKLCEDFGNngtVDLTAGmgptppgyYYPTSPPLVAGTTVVIGgrvaDNY 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 199 AEYGVRGYVTAYDVATGRQAWRFytvpgDPAKGFENKAMAmaagtwAGEWWkVGGGGTAWDSMAYDPELDLLYIGVGNGG 278
Cdd:TIGR03074 330 STDEPSGVIRAFDVNTGALVWAW-----DPGNPDPTAPPA------PGETY-TRNSPNSWSVASYDEKLGLVYLPMGNQT 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 279 P----WDRTvrsagKGDNLFVSSIVAIRPETGEYVWHFQEVPGDEWDYTATQHMILADLDIG-GQRRKVLMQAPKNGYFY 353
Cdd:TIGR03074 398 PdqwgGDRT-----PADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPKAdGTTVPALVAPTKQGQIY 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 354 VLDRATGQFISGTPYVPL-------NWSKGLDPRT----GRPDIVPA-------------------ARY-------AESG 396
Cdd:TIGR03074 473 VLDRRTGEPIVPVEEVPVpqgavpgERYSPTQPFSvltfGPPTLTESdmwgatpfdqlacriqfksLRYeglytppSEQG 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 397 AawLGLPSPAGGHSWQPMSYDPSRRLVFLPTAEMPYGYVSAKPGSFAYDPRGWNTGqdpaASSMPEDPKVRAQIRAMMK- 475
Cdd:TIGR03074 553 S--LVFPGNLGGFNWGGVAVDPTRQVMFVNPMRLPFVSQLVPRAPGDEAPSGAKGK----GTEMGLNPNKGTPYAVNMNp 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 476 --------------GALVAWDPVAGRRVWSV-------------PMPLPW------NGGVLSTAGGLVFQGnGTGE--FA 520
Cdd:TIGR03074 627 flsplgipcqappwGYMAAIDLKTGKVVWQHpngtvrdtgpmgiPMPLPIpigvptLGGPLATAGGLVFIG-ATQDnyLR 705
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 809275670 521 AYAADSGRKLWSVNLGSGIVAAPVTYR-IRGVQYVSVAVGWGGILPLNMGEAL 572
Cdd:TIGR03074 706 AYDLSTGKELWEARLPAGGQATPMTYMgKDGKQYVVIVAGGHGSSGTKRGDYV 758
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
57-363 |
2.66e-20 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 93.17 E-value: 2.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 57 PLAGIDAANVARLGVAWSADFEARSLRGVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDGATARrgccdvv 136
Cdd:cd10276 2 PTDLPEPTPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDMVYAADANGQVSAFNATTGKIIWETSLSGKGFLGG------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 137 nrGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITgaprIVKNRVIIGNGGAEYgvrgyvTAYDVATGR 216
Cdd:cd10276 75 --TPAVGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQLLSPPT----YADGKIYVGTGDGRL------YYCNAETGK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 217 QAWrfyTVPGDPAKGFenkamAMAAGTWAGEWWKVGGGGTAWDSMAYDPE--LDLLYIGVGNG---GPWDRTVRSAG--- 288
Cdd:cd10276 143 VVW---NRTSTAPELS-----LRGGAAPVGAYDVVFVGDGNGTVVALNTGtgVDIWEFSVSEPrgrTELPRMIDSSVtyv 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 289 -KGDNLFVSS----IVAIRPETGEYVWhfqevpgdEWDYTATQHMILADLDiggqrRKVLMQApkNGYFYVLDRATGQFI 363
Cdd:cd10276 215 vVGGYLYSTSyqgyLVALDFESGQFLW--------SRKASGGTSTSTDANG-----RVYVGDG--EGSLYCLDASTGDEL 279
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
56-225 |
5.71e-17 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 83.32 E-value: 5.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 56 SPLAGIDAAnvARLGVAWSADF-EARSLRGVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDgatarrgccd 134
Cdd:COG1520 21 APLPEFEPS--VKVKQLWSASVgDGVGKGYSRLAPAVAGDRVYAADADGRVAALDAATGKELWRVDLGEP---------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 135 vVNRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRnqnytITGAPRIVKNRVIIgnggaeYGVRGYVTAYDVAT 214
Cdd:COG1520 89 -LSGGVGADGGLVVVGTEDGEVIALDADDGEELWRARLSSE-----VLAAPAVAGGRVVV------RTGDGRVYALDAAT 156
|
170
....*....|..
gi 809275670 215 GRQAWRF-YTVP 225
Cdd:COG1520 157 GERLWSYqRPVP 168
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
53-219 |
1.36e-16 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 79.75 E-value: 1.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 53 TRFSPLAGIDAANVArlgVAWSADFEARslrgVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDGATARrgc 132
Cdd:pfam13360 40 TGGGQLVALDAATGK---LLWRQTLSGE----VLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLALR--- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 133 cdvVNRGVAYADGKVFLGAFDGRLIALDAKTGREVW--SVQTTDRNQNYT----ITGAPRIVKNRVIIGNGgaeygvRGY 206
Cdd:pfam13360 110 ---SSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWeaPLAAPRGTNELErlvdITGTPVVAGGRVFASAY------QGR 180
|
170
....*....|...
gi 809275670 207 VTAYDVATGRQAW 219
Cdd:pfam13360 181 LVAFDAATGRRLW 193
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
58-219 |
4.46e-15 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 75.13 E-value: 4.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 58 LAGIDAANVARLgvaWSADFEARSLRGVEatpiVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDGATArrgccdvvn 137
Cdd:pfam13360 5 VTALDAATGAEL---WRVDLETGLGGGVA----VDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGA--------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 138 rgVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITGAPRIVKNRVIIGNGGAEygvrgyVTAYDVATGRQ 217
Cdd:pfam13360 69 --PLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGDTVVAGFSSGK------LVALDPATGKV 140
|
..
gi 809275670 218 AW 219
Cdd:pfam13360 141 RW 142
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
103-243 |
1.31e-13 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 70.89 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 103 SVVMALDARTGRVLWRYDPHVDGATarrgccdvvnrGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQnytit 182
Cdd:pfam13360 3 GVVTALDAATGAELWRVDLETGLGG-----------GVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVL----- 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 809275670 183 GAPRIVKNRVIIgnggaeYGVRGYVTAYDVATGRQAWRfYTVPGDPAKGFENKAMAMAAGT 243
Cdd:pfam13360 67 GAPLVAGGRVFV------VAGDGSLIALDAADGRRLWS-YQRSGEPLALRSSGSPAVVGDT 120
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
88-225 |
1.28e-12 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 69.96 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 88 TPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDphVDGATARrgccdvvnrGVAYADGKVFLGAFDGRLIALDAKTGREV 167
Cdd:TIGR03300 60 QPAVAGGKVYAADADGTVAALDAETGKRLWRVD--LDERLSG---------GVGADGGLVFVGTEKGEVIALDAEDGKEL 128
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 809275670 168 WSVQTTDRnqnytITGAPRIVKNRVIIGNGgaeygvRGYVTAYDVATGRQAWRFYTVP 225
Cdd:TIGR03300 129 WRAKLSSE-----VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVT 175
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
52-221 |
4.56e-11 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 65.34 E-value: 4.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 52 ETRFSPLAGIDAANVARlgVAWSA-------DFEARsLRgveatPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVD 124
Cdd:PRK11138 29 VVKMSPLPQVENQFTPT--TVWSTsvgdgvgDYYSR-LH-----PAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 125 GATARRGCCDVVNRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTtdrnqNYTITGAPRIVKNRVIIGNGgaeygvR 204
Cdd:PRK11138 101 DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV-----AGEALSRPVVSDGLVLVHTS------N 169
|
170
....*....|....*..
gi 809275670 205 GYVTAYDVATGRQAWRF 221
Cdd:PRK11138 170 GMLQALNESDGAVKWTV 186
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
85-220 |
1.28e-09 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 60.60 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 85 VEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDgATARRGccdvvNRGVAYADGKVFLGAFDGRLIALDAKTG 164
Cdd:COG1520 129 VLAAPAVAGGRVVVRTGDGRVYALDAATGERLWSYQRPVP-ALTLRG-----TSSPVIVGGAVLVGFANGKLVALDLANG 202
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 809275670 165 REVWSVQ------TTDRNQNYTITGAPRIVKNRViignggaeYGV--RGYVTAYDVATGRQAWR 220
Cdd:COG1520 203 QPLWEQRvaqprgRTELERLVDVDGTPVVDGGVV--------YAVayQGRLAALDLRSGRVLWS 258
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
58-220 |
6.64e-09 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 58.29 E-value: 6.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 58 LAGIDAANVARLgvaWSADFE--ARSLRGvEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRY---DPH---------- 122
Cdd:COG1520 149 VYALDAATGERL---WSYQRPvpALTLRG-TSSPVIVGGAVLVGFANGKLVALDLANGQPLWEQrvaQPRgrtelerlvd 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 123 VDGATarrgccdVVNRGVAYAdgkvflGAFDGRLIALDAKTGREVWSvqttdRNQNyTITGaprivknrvIIGNGGAEYG 202
Cdd:COG1520 225 VDGTP-------VVDGGVVYA------VAYQGRLAALDLRSGRVLWS-----RDLS-SYTG---------LAVDGNNLYV 276
|
170 180
....*....|....*....|
gi 809275670 203 V--RGYVTAYDVATGRQAWR 220
Cdd:COG1520 277 TddDGRVWALDRRNGAELWK 296
|
|
| CccA |
COG2010 |
Cytochrome c, mono- and diheme variants [Energy production and conversion]; |
529-690 |
6.68e-09 |
|
Cytochrome c, mono- and diheme variants [Energy production and conversion];
Pssm-ID: 441613 [Multi-domain] Cd Length: 169 Bit Score: 55.73 E-value: 6.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 529 KLWSVNLGSGIVAAPVTYRIRGVQYVSVAVGWGGILPLNMGEALKDAVGPRVNRIVTFRLDGKAPYALPPVDPKVLPPLP 608
Cdd:COG2010 1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 609 ASAGDPRQVDEGRTLFHVRCWMCHGDTAV-NHGGVPNLRYSQAI-TDPDVFAAFVLQGVAEPqGMPNFAKDLTAAQAEAI 686
Cdd:COG2010 81 APAADAEALARGKALYEQNCAACHGADGKgGLGAAPNLTDDALYgGDPEALVETILNGRPGG-AMPAFGGQLSDEEIAAL 159
|
....
gi 809275670 687 RAYV 690
Cdd:COG2010 160 AAYL 163
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
58-220 |
8.89e-09 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 58.02 E-value: 8.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 58 LAGIDAANVARLgvaWSADFE--ARSLRGVeATPIVVDGVMYVSGPWSVVMALDARTGRVLWR---YDPHvdGATARRGC 132
Cdd:TIGR03300 157 LTALDAATGERL---WTYSRVtpPLTLRGS-ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEqrvALPK--GRTELERL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 133 CDVVNRGVAyADGKVFLGAFDGRLIALDAKTGREVWSvqttdrnQNYTITGAPRIVKNRVIIGNGgaeygvRGYVTAYDV 212
Cdd:TIGR03300 231 VDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWK-------RDASSYQGPAVDDNRLYVTDA------DGVVVALDR 296
|
....*...
gi 809275670 213 ATGRQAWR 220
Cdd:TIGR03300 297 RSGSELWK 304
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
85-216 |
1.22e-08 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 57.52 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 85 VEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDphVDGAtarrgccdvvnRGVAYADGKVFLGAFDGRLIALDAKTG 164
Cdd:COG1520 225 VDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLWSRD--LSSY-----------TGLAVDGNNLYVTDDDGRVWALDRRNG 291
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 809275670 165 REVWSvQTTDRNQNYTitgAPRIVKNRVIIGNGgaeygvRGYVTAYDVATGR 216
Cdd:COG1520 292 AELWK-QDALLYRGLT---APVVLGDYVVVGDF------EGYLHWLSRDDGS 333
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
85-229 |
2.31e-08 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 56.86 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 85 VEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDGATARrgccdvVNRGVAYADGKVFLGAFDGRLIALDAKTG 164
Cdd:TIGR03300 137 VLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPPLTLR------GSASPVIADGGVLVGFAGGKLVALDLQTG 210
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 809275670 165 REVWSVQ------TTDRNQNYTITGAPRIVKNRViignggaeYGV--RGYVTAYDVATGRQAW-RFYTVPGDPA 229
Cdd:TIGR03300 211 QPLWEQRvalpkgRTELERLVDVDGDPVVDGGQV--------YAVsyQGRVAALDLRSGRVLWkRDASSYQGPA 276
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
137-220 |
7.51e-08 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 54.94 E-value: 7.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 137 NRGVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRnqnytITGAPRIVKNRVIIGNGgaeygvRGYVTAYDVATGR 216
Cdd:TIGR03300 58 RLQPAVAGGKVYAADADGTVAALDAETGKRLWRVDLDER-----LSGGVGADGGLVFVGTE------KGEVIALDAEDGK 126
|
....
gi 809275670 217 QAWR 220
Cdd:TIGR03300 127 ELWR 130
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
475-549 |
1.30e-07 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 53.18 E-value: 1.30e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 809275670 475 KGALVAWDPVAGRRVWSVPMPLPWNGGVLStAGGLVFQGNGTGEFAAYAADSGRKLWSVNLGSGIVAAPVTYRIR 549
Cdd:pfam13360 2 DGVVTALDAATGAELWRVDLETGLGGGVAV-DGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGAPLVAGGR 75
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
82-216 |
3.53e-07 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 53.01 E-value: 3.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 82 LRGVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDphvdgatarrgcCDVVNRgVAYADGKVFLGAFDGRLIALDA 161
Cdd:PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE------------YGSVND-FAVDGGRIYLVDQNDRVYALDT 311
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 809275670 162 KTGREVWSvQTTDRNQNYTitgAPRIVKNRVIIGNggAEygvrGYVTAYDVATGR 216
Cdd:PRK11138 312 RGGVELWS-QSDLLHRLLT---APVLYNGYLVVGD--SE----GYLHWINREDGR 356
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
475-544 |
5.43e-07 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 52.51 E-value: 5.43e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 475 KGALVAWDPVAGRRVWSVPMPLPWNGGVlSTAGGLVFQGNGTGEFAAYAADSGRKLWSVNLGSGIVAAPV 544
Cdd:COG1520 66 DGRVAALDAATGKELWRVDLGEPLSGGV-GADGGLVVVGTEDGEVIALDADDGEELWRARLSSEVLAAPA 134
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
81-169 |
7.72e-07 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 50.86 E-value: 7.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 81 SLRGVEATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDPHVDgatarrgccdvvnRGVAYADGKVFLGAFDGRLIALD 160
Cdd:pfam13360 157 RLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGP-------------NGPILDGDLLYVVSDDGELYALD 223
|
....*....
gi 809275670 161 AKTGREVWS 169
Cdd:pfam13360 224 RATGAVVWK 232
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
81-229 |
9.03e-07 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 51.56 E-value: 9.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 81 SLRGVeATPIVVDGVMYVSGPWSVVMALDARTGRVLWRYD---PHVDGATARR----GCCDVVNrgvayadGKVFLGAFD 153
Cdd:cd10276 155 SLRGG-AAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSvsePRGRTELPRMidssVTYVVVG-------GYLYSTSYQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 154 GRLIALDAKTGREVWSVQTTDrnqnytITGAPRIVKNRVIIGNGGaeygvrGYVTAYDVATGRQAWRF----YTVPGDPA 229
Cdd:cd10276 227 GYLVALDFESGQFLWSRKASG------GTSTSTDANGRVYVGDGE------GSLYCLDASTGDELWSQtvllGRVLSSPA 294
|
|
| Cytochrome_CBB3 |
pfam13442 |
Cytochrome C oxidase, cbb3-type, subunit III; |
616-690 |
2.60e-06 |
|
Cytochrome C oxidase, cbb3-type, subunit III;
Pssm-ID: 463879 [Multi-domain] Cd Length: 67 Bit Score: 45.47 E-value: 2.60e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 809275670 616 QVDEGRTLFHVRCWMCHGDTAVNhggvPNLRYSQAitDPDVFAAFVLQGVaepQGMPNFAKDLTAAQAEAIRAYV 690
Cdd:pfam13442 2 AAAAGEALYAANCASCHGTGGAG----PSLAGRAL--PPEALVDIIRNGK---GAMPAFGGDLSDEELEALAAYL 67
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
145-179 |
4.17e-06 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 43.72 E-value: 4.17e-06
10 20 30
....*....|....*....|....*....|....*
gi 809275670 145 GKVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNY 179
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKTGGAVLSS 35
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
476-546 |
1.20e-05 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 48.00 E-value: 1.20e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 809275670 476 GALVAWDPVAGRRVWSVPMPLPWNGGVLStAGGLVFQGNGTGEFAAYAADSGRKLWSVNLGSGIVAAPVTY 546
Cdd:TIGR03300 75 GTVAALDAETGKRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVA 144
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
58-204 |
3.25e-05 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 46.85 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 58 LAGIDAANVArlgVAWSADFEARSlrgveaTPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDphvdgatarrgccDVVN 137
Cdd:TIGR03300 253 VAALDLRSGR---VLWKRDASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSELWKND-------------ELKY 310
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 809275670 138 R---GVAYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDRnqnyTITGAPRIVKNRVII-GNGGAEYGVR 204
Cdd:TIGR03300 311 RqltAPAVLGGYLVVGDFEGYLHWLDRDDGSFVARLKTDGS----GIASPPVVVGDGLLVqTRDGDLYAFR 377
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
140-170 |
5.91e-05 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 40.59 E-value: 5.91e-05
10 20 30
....*....|....*....|....*....|.
gi 809275670 140 VAYADGKVFLGAFDGRLIALDAKTGREVWSV 170
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWTY 32
|
|
| Luminal_IRE1_like |
cd09213 |
The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins; The ... |
76-170 |
1.20e-04 |
|
The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins; The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), eukaryotic translation Initiation Factor 2-Alpha Kinase 3 (EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are serine/threonine protein kinases (STKs) and are type I transmembrane proteins that are localized in the endoplasmic reticulum (ER). They are kinase receptors that are activated through the release of BiP, a chaperone bound to their luminal domains under unstressed conditions. This results in dimerization through their luminal domains, allowing trans-autophosphorylation of their kinase domains and activation. They play roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), contains an endoribonuclease domain in its cytoplasmic side and acts as an ER stress sensor. It is the oldest and most conserved component of the UPR in eukaryotes. Its activation results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. EIF2AK3, also called PKR-like Endoplasmic Reticulum Kinase (PERK), phosphorylates the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. It functions as the central regulator of translational control during the UPR pathway. In addition to the eIF-2 alpha subunit, EIF2AK3 also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR.
Pssm-ID: 188873 [Multi-domain] Cd Length: 312 Bit Score: 44.79 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 76 DFEARSLrgVEATPIV----VDGVMYVSGPWSVVMALDARTGRVLWRYDPhvDGATARRGCCDVVNRG-----VAYADGK 146
Cdd:cd09213 74 PLTIEDL--VEASPLVsdtnEDDVVVVGSKRTSVFALDAKTGKIIKTYRA--DGLPSTGGSDSDGNSTpgpdeLQEEEEL 149
|
90 100
....*....|....*....|....
gi 809275670 147 VFLGAFDGRLIALDAKTGREVWSV 170
Cdd:cd09213 150 LYIGRTDYVLQAIDPRSGKELWNV 173
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
73-226 |
1.37e-04 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 44.92 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 73 WSADFEARSLRGVEATP-------IVVDGVMYVSGPWSVVMALDARTGRVLWRYDphVDGatarrgccDVVNRGVAyADG 145
Cdd:PRK11138 93 WSVDLSEKDGWFSKNKSallsggvTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK--VAG--------EALSRPVV-SDG 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 146 KVFLGAFDGRLIALDAKTGREVWSVQTTDRNQNYTITGAPRIVKNRVIIGnggaeyGVRGYVTAYDVATGRQAW--RFYT 223
Cdd:PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVG------GDNGRVSAVLMEQGQLIWqqRISQ 235
|
...
gi 809275670 224 VPG 226
Cdd:PRK11138 236 PTG 238
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
475-546 |
4.74e-04 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 43.09 E-value: 4.74e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 809275670 475 KGALVAWDPVAGRRVWSVPMP-LPWNGGVLSTAGGLVFQGNGTGEFAAYAADSGRKLWSVNLGSGIVAAPVTY 546
Cdd:cd10276 47 NGQVSAFNATTGKIIWETSLSgKGFLGGTPAVGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQLLSPPTY 119
|
|
| PRK14486 |
PRK14486 |
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional |
611-690 |
5.88e-04 |
|
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
Pssm-ID: 184704 [Multi-domain] Cd Length: 294 Bit Score: 42.50 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 611 AGDPRQVDEGRTLFHVRCWMCHGDTAVNHGGV-PNLRYSQAITDPDVFAafVLQGVAEPQGMPNFAKDLTAAQAEAIRAY 689
Cdd:PRK14486 209 ATDVAAIAKGKALYDANCAACHGDEAQGQEGVaLNDIDDGDLPDAAYFG--MIKGGSDAKGMPGFGGDLSDDDIWAIVAY 286
|
.
gi 809275670 690 V 690
Cdd:PRK14486 287 I 287
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
101-210 |
6.00e-04 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 42.95 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 101 PWSVVMALDARTGRVLWRydpHVDGATARRG--------CCDVVNRG--VAYADGKVFLGAFDGRLI-ALDAKTGREVWS 169
Cdd:cd10280 495 PWGTLTAIDLNTGKILWQ---VPLGTVPDLGpkgiplpiPTGTPNLGgpVVTAGGLVFIAATQDNYLrAFDKATGKELWE 571
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 809275670 170 VQTTDRNQ----NYTITGaprivKNRVIIGNGGA---EYGVRGYVTAY 210
Cdd:cd10280 572 ARLPAGGQatpmTYEVDG-----KQYVVIAAGGHgslGTKRGDSVIAY 614
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
58-212 |
9.92e-04 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 42.11 E-value: 9.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 58 LAGIDAANvarlG-VAWSADFeaRSLRGVeatpIVVDGVMYVSGPWSVVMALDARTGRVLWRYDphvdgatarrgccDVV 136
Cdd:COG1520 245 LAALDLRS----GrVLWSRDL--SSYTGL----AVDGNNLYVTDDDGRVWALDRRNGAELWKQD-------------ALL 301
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 809275670 137 NRGV---AYADGKVFLGAFDGRLIALDAKTGREVWSVQTTDrnqnYTITGAPRIVKNRVIIgnggaeYGVRGYVTAYDV 212
Cdd:COG1520 302 YRGLtapVVLGDYVVVGDFEGYLHWLSRDDGSLVARLRVDG----SGIRAAPVVVGDTLYV------QTRDGTLAALRL 370
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
153-220 |
1.08e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 41.23 E-value: 1.08e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 809275670 153 DGRLIALDAKTGREVWSVQTTDRnqnytITGAPRIVKNRVIIGNGGAEygvrgyVTAYDVATGRQAWR 220
Cdd:pfam13360 2 DGVVTALDAATGAELWRVDLETG-----LGGGVAVDGGRLFVATGGGQ------LVALDAATGKLLWR 58
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
88-211 |
1.15e-03 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 41.93 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 88 TPIVVDGVMYVSGPWSVVMALDARTGRVLWRYDphvdgATARRgccdVVNRGVAYADGKVFLG-AFDGRLIALDAKTGRE 166
Cdd:cd10276 251 TSTDANGRVYVGDGEGSLYCLDASTGDELWSQT-----VLLGR----VLSSPAIYVGVYIYVTdNAEGYLYCLKDNDGLT 321
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 809275670 167 VWSVQTTDrnQNYTITGaPRIVKNRVIIGNGGaeygvrGYVTAYD 211
Cdd:cd10276 322 VARVEVDY--SQYILQG-PAVSDGWLYYGTDD------GYLYALT 357
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
476-555 |
2.46e-03 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 40.95 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 476 GALVAWDPVAGRRVWSVPMPLP----WNGGVLSTAGGLVFQGNGTGEFAAYAADSGRKLWSVNLGSG-----------IV 540
Cdd:COG1520 147 GRVYALDAATGERLWSYQRPVPaltlRGTSSPVIVGGAVLVGFANGKLVALDLANGQPLWEQRVAQPrgrtelerlvdVD 226
|
90
....*....|....*
gi 809275670 541 AAPVtyRIRGVQYVS 555
Cdd:COG1520 227 GTPV--VDGGVVYAV 239
|
|
| TsdA |
COG3258 |
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ... |
579-704 |
3.52e-03 |
|
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];
Pssm-ID: 442489 [Multi-domain] Cd Length: 216 Bit Score: 39.45 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 579 RVNRIVTFRLDGKAPYALP-----------------PVDPKV----LPPLPASAGDPRqVDEGRTLFHVRCWMCHGDT-- 635
Cdd:COG3258 59 RINGCFTRSMNGKPLPLDSaemkalvaylrwlsrglPVGVKLdgrgLPKLPKPAASAD-VERGKALYAERCASCHGADge 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 809275670 636 ----AVNHGGVPNLRYSQAITDPD-VFAAFVLQGVAEPQGMPNFAKD-LTAAQAEAIRAYVVKRALDLKADPDAP 704
Cdd:COG3258 138 gqgrADGQYGFPPLWGGDSYNDGAgMARLGTLADFIKGRNMPLGKPGsLSDDEAWDVAAYVRSLPRPVPRKTDVP 212
|
|
| Cytochrom_C |
pfam00034 |
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ... |
618-690 |
4.29e-03 |
|
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.
Pssm-ID: 459641 [Multi-domain] Cd Length: 89 Bit Score: 36.75 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 618 DEGRTLFHVRCWMCHG-DTAVNHGGVPNL-----RYSQAITDPDV------FAAFVLQGVAEPQGMPNFAKDLTAAQAEA 685
Cdd:pfam00034 1 ARGKKLFAANCAACHGvNGEGAGAGGPDLaglaaRYPGDALGAIRenkhaiGGGGVDRAGGPPGTGMPAFDGLTDEEIAD 80
|
....*
gi 809275670 686 IRAYV 690
Cdd:pfam00034 81 LVAYL 85
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
94-121 |
5.73e-03 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 34.86 E-value: 5.73e-03
10 20
....*....|....*....|....*...
gi 809275670 94 GVMYVSGPWSVVMALDARTGRVLWRYDP 121
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKT 28
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
474-533 |
7.42e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 38.54 E-value: 7.42e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 809275670 474 MKGALVAWDPVAGRRVWSVPMPlPWNGGVLSTAGGLVFQGNGTGEFAAYAADSGRKLWSV 533
Cdd:pfam13360 41 GGGQLVALDAATGKLLWRQTLS-GEVLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSY 99
|
|
| |
